nrl (nrl,LOC107554929,LOC107680315,LOC107731521,LOC107707327,LOC107573986,LOC107660532)


Basic Information

Item Value
gene id nrl
gene name nrl,LOC107554929,LOC107680315,LOC107731521,LOC107707327,LOC107573986,LOC107660532
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1902362 ~ 1907463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218622.1
ATGTCTTCATCTCTGCCGCTGCCCTCTTTACCTCCAAGCCCTCTGGCCATGGAGTATCTCAACGACTTCGACCTGCTGAAGTTCGAAGTGAAGCCTGACacccctccacctcctccagcCTGCCTTTACCCCAAACCAGGCGTCCATCAGGAGACGGCCGGTTCTCCTtatgctcctcaccctcctccTGACTCCAGCCTCAGCTCCAGTCCCTACACCTCCCTTCCTCCGTCACCCACGCTAAGTGACGGACACCCGCCGCCATCTgcgtcctcctcttcctcctctctctcgtTCCCGCTCTCCATCTCCACCGGGTACATGTCAGGCCAGAGCTCCGGCTCTCAAGGAAACCTGGACGGGAGCCCAGAGGCCGGAGGCCCCACGCCGTGCTCAAACCCCACCTCTTTGGAGGACCTGCTGTGGTTGGCTGCATTGCAGCAGCAGTTCGGTGGGGAGCCCGGAGGAGCCGCGTCTCTGCTGGGAGCTCTTGGAGGAGTGCCGGACCGAGGGGACCGGGATCGAGGAGGGTTCCTGGGATGTGAAGATGCAGTGGAGGCCCTGCTGAACTCTGCTGCAGCCGCCGTAACTTCACAGTTCCCAGTTTTGTCGCAGAGTTCGAGCAGCAGTCACATGGGTGACTCCAGCAGCGACAGCGGTGTCGATGTTGTTCTTAACAAGTCGTCAGACATGTGTCACCGGCCTATACTGGTCGTTTCTTCCacccctccatctctctctaaTGTCAACACATCCACCAGTCCCTTCTCACAACCCCTCAGTCCACAGAGCCGCCTCCATCACCCACACCATCCAATGCAAGgccattatcatcatcatcatcatcatcatcatctgcaAGTCACTCAGTGCGGGATGGATGAGCGTTTTTCCGATGAGCAGTTGGTAAGTCTGTCAGTGCGAGAGCTGAACAGGCATTTGCGTGGGGTAAGCAAAGATGAGGTGGTCCGTTTGAAACAGAAAAGACGGACGCTGAAGAACCGCGGTTACGCCCAGTCCTGCCGTTACAAACGCCTCCAGCACCGGCACGCGCTCGAGTCCGAGAAACACATCCTCACACAGCAGCTGGAGCAGCTGCAGTGTGAGCTGTCCCGCGTGTTGAGAGAGCGAGACACGTACAAAGCTCGATACGAGAAGCTCATCAGTTCAACCGAGACTCAGCCTTCCCACCCCAACACCTCGCCTTCTCCTACTCCTCCGGATTACTTTTTGTGACAAAATGAACATTGTACAGACGAGAATTGAAGGAGAGCTGATTATTGTGATGGGTGAAAGTAAT

Function

symbol description
nrl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in lens; retina; retinal outer nuclear layer; and solid lens vesicle. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 27. Orthologous to human NRL (neural retina leucine zipper).

NR:

description
PREDICTED: transcription factor MafA-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218622.1 True 1300 mRNA 0.57 4 1902362 1907463

Neighbor

gene id symbol gene type direction distance location
senp6a senp6,LOC107660507,LOC107707326,LOC107573984,LOC107680310 coding downstream 5589 1879322 ~ 1896773 (-)
mei4 mei4 coding downstream 82969 1808105 ~ 1819393 (-)
nt5e nt5e,LOC107660511,LOC107554926,LOC107562347,LOC107680304 coding downstream 100399 1790036 ~ 1801963 (-)
ankrd6b ankrd6,ankrd6b,LOC107562345,LOC107660530,LOC107731518,LOC107554922,LOC107742996 coding downstream 291572 1593730 ~ 1610790 (-)
LOC122325606 NA coding downstream 402875 1499378 ~ 1499487 (-)
kcnk2b kcnk2,kcnk2b,LOC107554930,LOC107731508,LOC107680301,LOC107660545,LOC107707328 coding upstream 27074 1934537 ~ 1965297 (-)
smyd2b smyd2b,LOC107731509,LOC107707324,LOC107574479,LOC107678788,LOC107660544,LOC107592980 coding upstream 68861 1976324 ~ 1988216 (-)
si:dkey-121j17.6 LOC107660501,LOC107574480,LOC107731504 coding upstream 82022 1989485 ~ 1992179 (-)
LOC122325649 NA coding upstream 112918 2020381 ~ 2020592 (-)
LOC122325666 NA coding upstream 114168 2021631 ~ 2021843 (-)
G135480 NA non-coding downstream 24240 1877914 ~ 1878122 (-)
G135435 NA non-coding downstream 149415 1752733 ~ 1752947 (-)
G135434 NA non-coding downstream 149906 1752156 ~ 1752456 (-)
G135433 NA non-coding downstream 152559 1749595 ~ 1749803 (-)
G135430 NA non-coding downstream 156706 1745359 ~ 1745656 (-)
G135542 NA non-coding upstream 192533 2099996 ~ 2100241 (-)
G135546 NA non-coding upstream 451015 2358478 ~ 2358691 (-)
G135627 NA non-coding upstream 669669 2577132 ~ 2577488 (-)
G135629 NA non-coding upstream 671806 2579269 ~ 2579702 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 736718 2644181 ~ 2647081 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 26070 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 241826 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 330663 1546487 ~ 1571699 (-)
G135279 NA other downstream 791501 1110425 ~ 1110861 (-)
G135275 NA other downstream 796544 1103306 ~ 1105818 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other upstream 98086 2005549 ~ 2013527 (-)
G135548 NA other upstream 456590 2364053 ~ 2364824 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 833089 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1730826 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 2061300 3968763 ~ 3975258 (-)

Expression


Co-expression Network