ndufaf4 (LOC107755001,LOC107565458)


Basic Information

Item Value
gene id ndufaf4
gene name LOC107755001,LOC107565458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2474871 ~ 2478814 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218645.1
TTGTCCTCTACCTCCCATTACGTTGCCCGCGGAGACCTATACTTGCCTCTGTGTAGAGATTTCAGACATGGGCTCAAGAGTTACACGCCTGTTTAGAAACTTCAATATAGAGAATCGCGCTCACCGAGAAATAAGCAAGACAAAATCTAAAGCAGCGCCACGGCATTCAGCACCAATCGGTATTCCACAAGAAGACATTGCGGAAGAGATCAACAAGAAGAATGATTCGCTGCTGTCAATGCTGAAGGATGTGTATGTGGAGTCTAAAGATCCAGTTCCTCAGGACGAAGCACTTCCAGAGGTTAAGAAGGTCGAGGAGGAGACGCAGCAAAGGGCGCTGAAGCATAGTCTACCGAGTGCCCCCTATGGTTTCTGTGACATCACTGTTGTGCCGAAAGGCAAAATTTCACTTGTGGAAGCGTTAACTGCACTGAACAATCACAAACTCTTGCCTAAAACATGGACTCCAGAGAAGCTGGCAGAGGAGTACTCTCTAGACCCAAAAGATGCCAAAGCGCTGACAGAATTCTTTTTTCCCTTTGACGTCATAATCATTCCACCAAAAACAGAGGAGACTAAGCGGATTGATTCTTAGCACATATGAACAGTGTCGCAAACAGACTCGAGCCGTCTCTGAAACGCCACAGTATCTAAATACGTGTGTTATGACCGTCGCTTGTagtgtgtttgtattatttgtttttgaaggccctgtcataattatttattcatttttgtctcATTTAAAGTATTGCATATCCCAACATGTATTGTAGCAATAACTTAACTAAGAGGAAAAATCTTGTCAGCCAAATCAATTTCTGCTTCAAAACATCAGTACAGGTTATAATTTTCAATTAATATGAAGAAACTGGTTCAGAAAtgcttcctttttttatgtgaaCACTGTAGTTTGCATCTGTTTTTACTGACAATAAATCAGTTGTCCTTGCATTGGTCAAA
>XM_043218646.1
TTGTCCTCTACCTCCCATTACGTTGCCCGCGGAGACCTATACTTGCCTCTGTGTAGAGATTTCAGACATGGGCTCAAGAGTTACACGCCTGTTTAGAAACTTCAATATAGAGAATCGCGCTCACCGAGAAATAAGCAAGACAAAATCTAAAGCAGCGCCACGGCATTCAGCACCAATCGGTATTCCACAAGAAGACATTGCGGAGATCAACAAGAAGAATGATTCGCTGCTGTCAATGCTGAAGGATGTGTATGTGGAGTCTAAAGATCCAGTTCCTCAGGACGAAGCACTTCCAGAGGTTAAGAAGGTCGAGGAGGAGACGCAGCAAAGGGCGCTGAAGCATAGTCTACCGAGTGCCCCCTATGGTTTCTGTGACATCACTGTTGTGCCGAAAGGCAAAATTTCACTTGTGGAAGCGTTAACTGCACTGAACAATCACAAACTCTTGCCTAAAACATGGACTCCAGAGAAGCTGGCAGAGGAGTACTCTCTAGACCCAAAAGATGCCAAAGCGCTGACAGAATTCTTTTTTCCCTTTGACGTCATAATCATTCCACCAAAAACAGAGGAGACTAAGCGGATTGATTCTTAGCACATATGAACAGTGTCGCAAACAGACTCGAGCCGTCTCTGAAACGCCACAGTATCTAAATACGTGTGTTATGACCGTCGCTTGTagtgtgtttgtattatttgtttttgaaggccctgtcataattatttattcatttttgtctcATTTAAAGTATTGCATATCCCAACATGTATTGTAGCAATAACTTAACTAAGAGGAAAAATCTTGTCAGCCAAATCAATTTCTGCTTCAAAACATCAGTACAGGTTATAATTTTCAATTAATATGAAGAAACTGGTTCAGAAAtgcttcctttttttatgtgaaCACTGTAGTTTGCATCTGTTTTTACTGACAATAAATCAGTTGTCCTTGCATTGGTCAAA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like isoform X2

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process

KEGG:

id description
K18161 NDUFAF4; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218645.1 True 963 mRNA 0.42 3 2474871 2478814
XM_043218646.1 False 960 mRNA 0.42 3 2474871 2478814

Neighbor

gene id symbol gene type direction distance location
gpr63 LOC107755000,LOC107670245,LOC107565457,LOC107750403,LOC107676696 coding downstream 878 2466383 ~ 2473993 (-)
col10a1b col10a1,col10a1b,LOC107710900,LOC107565440,LOC107704357,LOC107548284,LOC108415286 coding downstream 86207 2383181 ~ 2388664 (-)
frk frk,LOC107565439,LOC107548283,LOC107670235,LOC107656465 coding downstream 96018 2367664 ~ 2378853 (-)
trnaf-gaa_118 NA coding downstream 309809 2164990 ~ 2165062 (-)
trnaq-cug_70 NA coding downstream 309972 2164828 ~ 2164899 (-)
fynb fyn,fynb,LOC107704353,LOC107755004,LOC103458010 coding upstream 1558 2480372 ~ 2533127 (-)
si:dkey-119m7.4 si:dkey-119m7.4,LOC107704351,LOC107670234,LOC107565461,LOC107755002,LOC107709524 coding upstream 59823 2538637 ~ 2550699 (-)
tube1 tube1,LOC107670257,LOC107703869 coding upstream 105253 2584067 ~ 2594796 (-)
lama4 lama4 coding upstream 117598 2596412 ~ 2632143 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding upstream 184964 2663778 ~ 2670855 (-)
G135546 NA non-coding downstream 116180 2358478 ~ 2358691 (-)
G135542 NA non-coding downstream 374630 2099996 ~ 2100241 (-)
G135480 NA non-coding downstream 596749 1877914 ~ 1878122 (-)
G135435 NA non-coding downstream 721924 1752733 ~ 1752947 (-)
G135434 NA non-coding downstream 722415 1752156 ~ 1752456 (-)
G135627 NA non-coding upstream 98318 2577132 ~ 2577488 (-)
G135629 NA non-coding upstream 100455 2579269 ~ 2579702 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 165367 2644181 ~ 2647081 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding upstream 253789 2732603 ~ 2737889 (-)
G135691 NA non-coding upstream 280283 2759097 ~ 2760884 (-)
G135548 NA other downstream 110047 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 461344 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 598579 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 814335 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 903172 1546487 ~ 1571699 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 261738 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1159475 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 1489949 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 2085542 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 2532567 5011381 ~ 5012580 (-)

Expression


Co-expression Network