myct1a (myct1a,LOC107737339,LOC107665338,LOC107659222,LOC107555747,LOC107556166,LOC107721271)


Basic Information

Item Value
gene id myct1a
gene name myct1a,LOC107737339,LOC107665338,LOC107659222,LOC107555747,LOC107556166,LOC107721271
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13555926 ~ 13559395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218696.1
TTTTACGCAGGAAAGGCAGGAAACGTAAAGTGAAGACTTTGCTTTTCCACAAACAACTGACTAGCGACCCCGGCCTTGGCGAGGATCCTGTGTGCCACGGTGCTGAGCAGTCTGGGACTGAAAAAGagacacaaaaagagaaagtgagagaggagGGTCCCTGGAATTGAGGAGTTGGATAGACACGGAGAGAGACACAAGAAAAAGTTCAAAGGAAGagtgaaagaagaaaagatTTGGAGGGGAGAGACTGTGTCCTCTCTTGTCTCCCCTGTATCTCTGGAGGGAGCTATGGCGGATAACAGCACTCATCCTATTGTGGAGATACTGGAGTCCTTCGGATTGAGGGATGTGATTCTGGCCTTCTGTCTTTCTATGGTTGTCGGTCTTCTGCTGGGAGCTCTGGTCTACATGATCTTGATCTGGATGTCTCGTCGACGAGCTTCGGCCACCATTACTCGTGTACCCATCCACCAGTCCCGCTCCACCACCCGTTCATCCTCGCCGCGTTCTCGGCCAGGCTACAGTCGACACAGCAGTGCCTACGACCGACGCAGCAACAACAGTCTGGCCAGCGCTGCCTTCTCCTTCCATCGGCAAACCTCGTCCTCGCCGATAGACTATGGTGACTCACCAGGCCGCAAGTCGAGCTTCCGGGCCTCTACTTTTCATCCTCTTCTCCAGTGTAGCCAGATAGCTCGTGAGGCAGAAGAGGGTGCCCAGGGCAGCTTGCCACGGACCCCCACTCTCACTACCAACCCTGGAGCGGCTGGCTCCACCAGCACTGTCAGCTCCATGGTCACTCCACCCCTGGCCAGAACCAGGCCAGATTCCTTCTGGGGCAACAGCAATCTAAGAGGCTTTCACGTTGGCCAGACTCCGCCACCTGCCTATGAGAGCATCATACGAGCCTATCAGGAGACAACTACGTGAAGGGAGAGGAGATGCTACAGTGATGGAGGaagataaatgtattaatagacTTGGACTAGACAATTGGACAGCTGAAAGCAATATAGATGTCTTGCATCTTAAACTGACATGGCCAGTTTTtcaatgtttgtatatttgcgtttgtttgtatttttattaaaaataaaggttatttttttGCCATCTATCCATGAGGGACCATTTCCAGGGAACATtccattaaataaaagtttattgtgGAATAAAAAGTTTCTTTAGAATATGAAAATTTTCTTCTCAATGGAAaagaaatggttcttttaagaactctTCCATAAAAAgttctttgaggaaccaaaaaatagttattttatggCATCATTgcaaaaaacaactttttggaATCTTTTTTCAGGTTATTCTGAAATACTCATATGAGAGATTGTTTGAACGGGAGAGTTAGGTAACTTTTTGGCTTCAACGGGTCTGCTTTATTGACTTAGTAAAGacaaaatacctttattttatGGGGAGAGTTTGTGTAGAGtgtgagaaaatgatgaaaaaatgtgATAAGTGGAGGGAGAGAGATACAGTAAGAGATACCGAAAGTCGTAGTAAGCATGGGGACAAATGTGAGAGGATTGCTGAACTCTATTGCAAACACTAATTTAAAATCGTTTAGCAACAAACTCATTAGATTGTGTAtttattggtttgttttctgtgaaCTCTAGTCTTTTGGAATCATTGTATTTCTCAACGCAATTgtactcataaaaataaactgacacCAAGCATTTTGCAATA

Function

symbol description
myct1a Acts upstream of or within embryonic hemopoiesis. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Is expressed in axial vasculature; ventral mesenchyme; and ventral mesoderm. Orthologous to human MYCT1 (MYC target 1).

NR:

description
PREDICTED: myc target protein 1

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218696.1 True 1722 mRNA 0.44 2 13555926 13559395

Neighbor

gene id symbol gene type direction distance location
serac1 serac1,LOC107555766,LOC107737322,LOC107659155 coding downstream 501 13548658 ~ 13555425 (-)
si:dkey-12h9.6 si:dkey-12h9.6,LOC107659220,LOC107737319,LOC107665359,LOC107555760,LOC107556127 coding downstream 8882 13538787 ~ 13547044 (-)
capn3b capn3b,LOC107659224,LOC107721354,LOC107665384,LOC107737332 coding downstream 29653 13516657 ~ 13526273 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763,LOC107556164 coding downstream 45408 13508652 ~ 13510518 (-)
mideasa elmsan1a,LOC107555757,LOC107721359,LOC107683915,LOC107665392,LOC107737312,LOC107556160 coding downstream 63833 13482405 ~ 13492093 (-)
esr1 LOC107737325,LOC107555768,LOC107556167 coding upstream 111709 13671104 ~ 13683267 (-)
armt1 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 coding upstream 125604 13684999 ~ 13689387 (-)
akap12b LOC107721347,LOC107555771,LOC107659213,LOC107711639,LOC107665356 coding upstream 140697 13700092 ~ 13732388 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107659212,LOC107721348,LOC107665399,LOC107711640,LOC107556131 coding upstream 175874 13735269 ~ 13761950 (-)
si:dkey-25e12.3 LOC107665334,LOC107659167,LOC107721285,LOC107556143,LOC107555748 coding upstream 209205 13768600 ~ 13770849 (-)
G138232 NA non-coding downstream 40793 13514765 ~ 13515133 (-)
G138221 slc35f6,LOC107721386,LOC107555739,LOC107683918,LOC107737338,LOC107665330 non-coding downstream 57900 13495682 ~ 13498026 (-)
G138217 zgc:153896,LOC107721358,LOC107665343,LOC107737337,LOC107556161 non-coding downstream 76902 13478772 ~ 13479024 (-)
G138159 LOC107556152 non-coding downstream 162331 13388921 ~ 13393595 (-)
G138162 NA non-coding downstream 164583 13385970 ~ 13391343 (-)
G138335 foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144 non-coding upstream 271182 13830577 ~ 13832060 (-)
G138351 NA non-coding upstream 290545 13849940 ~ 13850174 (-)
G138399 LOC107711644,LOC107659205,LOC107721344,LOC107602456,LOC107665390,LOC107602691,LOC107555778 non-coding upstream 381833 13941228 ~ 13999349 (-)
G138407 NA non-coding upstream 385865 13945260 ~ 13945737 (-)
G138401 LOC107721343,LOC107721342,LOC107583935,LOC107721341,LOC107659208 non-coding upstream 388733 13948128 ~ 13953887 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 7335 13547276 ~ 13548591 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 108538 13423958 ~ 13447388 (-)
LOC122324483 NA other downstream 291642 13260919 ~ 13264284 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other downstream 1275614 12241801 ~ 12280312 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1331656 12222810 ~ 12224270 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other upstream 105111 13664506 ~ 13692007 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other upstream 203940 13763335 ~ 13767824 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other upstream 634338 14193733 ~ 14198528 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 882138 14441533 ~ 14445925 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 1433704 14993099 ~ 15015269 (-)

Expression


Co-expression Network