LOC122324357 (tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823)


Basic Information

Item Value
gene id LOC122324357
gene name tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 3132081 ~ 3179282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218724.1
GCCTCTCTTACTCTCGCTAACTCTGACTGACTCTCACTCTCAATCAAGTTTGAGCTTTTAAAGTGCTCGTCAATGTTTGTGTCACTGTTTTACGGTCCAAAACCGAGTGAAGAGACTTCAATTTTCCagcggaagaaaaaaaatgtattctttatatGTCATGGCGACAAATGTTCTGTTGATGTTGATAATGACAGTTGTATGTCTGATCGGATATACGAATTCATGTCCTCATAACTGCGAGTGTTCGCAATGGAAAGCCTTCGCCGTCTCATGCATGGGCATAGACGTTATTCCAACACTTCCCCCAATGACAGAATTCTTAAGTCTCTACGAATCAAGCCTGATGACAGTTCCCCAAGATGCCTTTGCGAATATGGTCAATATCTCAAGaatCTATCTGTCCGTGGATGTCTCTCTGAACAGGTTAGAGAAGCATTCCTTCTACAACCTGAGAAAGCTTACTCATATAGAAATAAGAAACACAAGAAATTTAACATTCATCCATCCAGAGGCTTTTAGGAATCTCCCTAAATTACAGTATTTaggCTTATTCAACACAGGACTCACCATCTTCCCTGTCCTGACCAATATCCAGGCTGATAACTCATACTTCCTACTAGAACTAAGCGATAATCCCTATATTACTGAAATTCCAGCTAATGCTTTTCTTGGCATTACCAATGATCTACTGTCAGTAAGGCTATACAGCAATGGCTTCACGAAAGTACAACATCATGCTTTCAATGGCACAAAGCTGGACTCAGTGTACCTGCATAGAAATAAACAATTGACAAGGCTGGATGAGAGAATGTTTGCTGGGACAAGCACTGGGCCAATGCTCCTtgatGTATCAGAATCTGCTGTCACTTCTCTACCGACCAGAGGCTTGGAGTCACTTCGAGAACTCTGTGCTCGAAATGTCTGGACCCTCAAAAAACTACCACCAATCAAGACTTTCAGACACGTGATAACAGCAGACCTTACCTACCCCAGCCACTGTTGTGCATTCAAGaacttgaagaaaaaaagaggGTACTTAGAGGACATCATATGTAACCTCACTGCCAGGTATAACCAACTTCAAAAAAGATCTGTGGGAACTTTTACTATTCCTGGCCTGCACAGCAGCATGGAACCTGGCATTGATTCAGGTGATAACCTCTTTAGAGACACCTATGACCACCAGGACTTTTACAGCAACCTGCACTACCACACCTACTTTGGTGGGCACCCAGACGATGATGTGGGCTTTGGCGACACGCTGAAGAACCCCCAGGAAGACACCAGCCATGAGTTTGACAGCCGCTATGACTACATTGTGTGTGAAGAGGGAGAGGACGTTGCCTGTTTTCCTGCTCCTGACGAGTTCAACCCATGTGAGGACATCATGGGTTTTAGCTTTCTAAGGGTATCTGTGTGGTTTGTCAGTTTGCTTGCTGTGTTGGGAAACCTGCTGGTACTCTTGGTGCTGCTCACCAGCCACTACAAACTGTCGGTTTCAAGGTTTTTAATGTGCCACCTGGCCTTTGCTGATCTGTGTATGGGTATTTACCTTTTGCTGATTGCTTCCGTTGACCTCCACACACGTTCTGAATACTACAATCATGCTATTGATTGGCAGACAGGCCCAGGATGCAGCCTAGCTGGGTTCTTCTCTGTCTTTGCTAGTGAACTTTCAGTCTACACACTGACCACTATTACTCTGGAACGTTGGTATGCTATCACATACGCCATGCGACTGGACCGTAAGTTGCGTCTGTCCCATGCTTCAGTCATCATGCTGGTAGGCTGGATCTTTTGCCTCTTATTGGCTCTTATGCCTCTCATTGGGGTCAGCAGCTATCAAAAGGTCAGTATTTGCCTGCCCATGGACACCCAGACACTTGTGGACCAGATCTACATCCTATGTGTGCTTGTTTTTAACATCCTGGCTTTTCTGGTCATTTGTGCGTGTTACATCAAGATCTATTGTGCTGTTCACAACCCCAGTCATCAGTCTGCCAACAAAGACACCAACATTGCCAAGCGTATGGCTGTGCTCATTTTTACAGACTTCCTCTGTATGGCACCGATTTCGATGTATGCTATGACCGCTGCATTGGACCACCCACTCATCACTGTGTCAAACTCCAAGATCCTCTTGGTGCTCTTTTACCCTCTGAATTCTTGCGCTAACCCTTTCCTATATGCCATCTTCACCAAGGCCTTCCAAGGAGATGTCTTTATACTGCTCAGCAAAGTGGGTCTCTGTAAACGTCAGGCTCAGCTTTTTCGAGGTCAGACAATATCTTCAAAGGCAAGCAGCAGAGGAATCACTAGACGTGAGAGGGAGCAAACAGAAGCAAAGGAGACCCCTATTTCGCTTCTAGATTTTTCATGCAACCAGCCAGTCACCCAACAGCAGAAGGACAGTGATGAACAGGACACTTAAAAACTTTGTTATTTCCGACCACAACAACTGTAATGTAGACAAACAGCTGAGTTGGagtcagaaagacagaaaattaattaatagttaattacCTGAACCTGATAAAGTTTAGgtcttttatttaatgcagcctgtcctccaacaaaaaacgACCCTATAGGTCATTAGTGCAAGTACCTTATAtgacatacatttaaatttttaatttaagcaccCTCTAGCAGgcgtaaaaataatgacagtgttGTGTTGCATctgtttaaatgcagtgtgtggATTGTTTTAATTACCAATCtgactgtaaaaacaataacatattttGATGGGTGTAATCTGTATGAATGATCAGACCTAACtccacacctaaacctacccattgCAAAAATCCTGCAAAATCGTATTTACGTATCGGTCTTTGTAAATCacgtatgtttattattataacatccTGAGGCGGCATTTTGAGGGTAACTTTGCATTGAGCAGTGAACTGAAAATGTACTGAGCCATACAGAGAAACAGAAGCATGGTACCAAGAT

Function

symbol description
tshr Enables thyroid-stimulating hormone receptor activity. Acts upstream of or within skeletal system development. Predicted to be located in basolateral plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in thyroid follicle and thyroid primordium. Used to study hyperthyroidism. Human ortholog(s) of this gene implicated in Graves' disease; cardiomyopathy; congenital nongoitrous hypothyroidism 1; and mitral valve prolapse. Orthologous to human TSHR (thyroid stimulating hormone receptor).

NR:

description
PREDICTED: thyrotropin receptor-like

GO:

id name namespace
GO:0038194 thyroid-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04249 TSHR; thyrotropin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218724.1 True 2973 mRNA 0.43 10 3132081 3179282

Neighbor

gene id symbol gene type direction distance location
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding downstream 283456 2787139 ~ 2848625 (-)
LOC122325188 LOC107714796,LOC107565462,LOC107670243,LOC107550532,LOC107676708,LOC107715681,LOC105017614,LOC106607890 coding downstream 353256 2761146 ~ 2778825 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding downstream 461226 2663778 ~ 2670855 (-)
lama4 lama4 coding downstream 499938 2596412 ~ 2632143 (-)
tube1 tube1,LOC107670257,LOC107703869 coding downstream 537285 2584067 ~ 2594796 (-)
LOC122324803 rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701 coding upstream 17031 3196313 ~ 3220549 (-)
LOC122324861 rhob,LOC107730407,LOC107704819,LOC107569216,LOC107549346,LOC107657220,LOC105907285,LOC103025336,LOC106607565 coding upstream 292712 3471994 ~ 3473405 (-)
tshr LOC107728338,LOC107549347,LOC107657214,LOC107681439,LOC107742823,LOC107569215 coding upstream 358591 3537873 ~ 3547204 (-)
trnat-ugu_52 NA coding upstream 1270101 4449383 ~ 4449455 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding upstream 1489397 4668679 ~ 4674148 (-)
G135691 NA non-coding downstream 371197 2759097 ~ 2760884 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding downstream 394192 2732603 ~ 2737889 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding downstream 485000 2644181 ~ 2647081 (-)
G135629 NA non-coding downstream 552379 2579269 ~ 2579702 (-)
G135627 NA non-coding downstream 554593 2577132 ~ 2577488 (-)
G135819 NA non-coding upstream 207910 3387192 ~ 3387529 (-)
G135901 NA non-coding upstream 717920 3897202 ~ 3897582 (-)
G135910 NA non-coding upstream 810575 3989857 ~ 3990072 (-)
G135916 NA non-coding upstream 825555 4004837 ~ 4006307 (-)
G135918 NA non-coding upstream 827273 4006555 ~ 4007352 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 374651 2740552 ~ 2757430 (-)
G135548 NA other downstream 767257 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 1118554 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 1255789 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 1471545 1655096 ~ 1660536 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 459007 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 789481 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 1385074 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 1832099 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 1845524 5024806 ~ 5029567 (-)

Expression


Co-expression Network