si:dkey-121j17.6 (LOC107660501,LOC107574480,LOC107731504)


Basic Information

Item Value
gene id si:dkey-121j17.6
gene name LOC107660501,LOC107574480,LOC107731504
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1989485 ~ 1992179 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218731.1
aagtagcAGAAGCGCATGCGCGAGATTAGAGCGAACCAAAACAATGAACCCTGACACGGTGGCGAGTAGGCAGCTTGCTTTTCGAGTTGTCTGTGCGCTCATTTGCAGCGGAAAACAGAAACCAATACagatacagaaacaaaaacagaaaaagaagcGAATATGGAAGAGAGAATGTCCGGGACGTCGCGAGCTGCCTGGGTCGTCTGTTCTTCAGAGAGAGTTGGAGATGACCGATGAGAATGGGTTCGGGGAGCTGCTGCGGATGACAGCGGAGGAGTTTGAGTTTCTGCTGCAGATGGTTGGGCCCCTCATTACCAAGCAGCACACAAAAATGAGACGGGCGATATCCTCAAGAGATCGCCTATCTGTGACCTTGCGGTTTTTGGCAACAGGAAAAACATTTAGTTCCCTCAGTGCGCAATACAGTATTGGGGCCAGCACTATTTCACAGATAGTCATGGAGACCTGTGGCGCTCTGTACCAGCTTATGAAAAAAGACTTCCTGAAGACACCATCAACAGAGACAGAATGGCGTGCAGTAGCCCAGGACTTTGAATCGAAATGGCAATTTCCACATTGCTTGGGTGCGCTTGGTGAAAAACAAATTTACTTACAGTCTCCGGTAAAAAGTGGCTGCCATGATCATAATAACAAGGGCAGATCATATGTGACAATAATGGCTGCCGTGGATGCAAATTACAAGTTCATCTATGGCAGTTTGGAAACCCAAGATAAGGTCTCTGGTGCTGGACGATTCGCTCACTCCAATTTGTGTAAAGCGATGGATCAGGGTCTGCTGAATTTTCCTCCACCTGAACCATTGCCAGACAGTGACATCATGATGCCATACATGTTTGTGGGCGATGAGCGGCATCCTTTACGGCCGGATCTCATGAAGCCATATCCAAATAAACAGATGGACCACAGTCAGGGGATACTGAACTATCGTCTTTCAAGGGCACGCAGAGTTGCAGAAAATGCATTCAGCATTCTAGCAAACAGGTTAAAGGTTTTCAGGAGCACCATATTCTTGGAGCCGGACAAAGTGGAGAAGATCACCATGGCCTCTATATGCATCCATAACTTCCTCTGTGAGCGCAGGTCTGAGGCATATATACCTCAACCCTTCGCATGTTTGAAGAATGAAGACCACAGCATAGTTGAGGGAACCTGGAGGAATCAAGGGCATGGGTCTTGTCAGCCACTCAAGCAAAGAGGGGAACACAAGTTAGTTACGCCAGAAATGCAACGAAACCTTCTGCGCGACTATTTTGTCTCGCCGGCAGGTTGCATTGCTTCACAAGATGAACACGTTTAGCATTGTGGGAATGTTGGACTAGTATTTTGTAGTGGAGAACATTGCATTGCTAAGAGTTTAATGTACATACTATTTAAAAAGCGATATAAATGTGCTGTAAGGTCAACATTGCTTATGCcttttacaaaagtaaaataaaatcaaacttgTTTACATAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107660501

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218731.1 True 1480 mRNA 0.46 4 1989485 1992179

Neighbor

gene id symbol gene type direction distance location
smyd2b smyd2b,LOC107731509,LOC107707324,LOC107574479,LOC107678788,LOC107660544,LOC107592980 coding downstream 1269 1976324 ~ 1988216 (-)
kcnk2b kcnk2,kcnk2b,LOC107554930,LOC107731508,LOC107680301,LOC107660545,LOC107707328 coding downstream 24188 1934537 ~ 1965297 (-)
nrl nrl,LOC107554929,LOC107680315,LOC107731521,LOC107707327,LOC107573986,LOC107660532 coding downstream 82022 1902362 ~ 1907463 (-)
senp6a senp6,LOC107660507,LOC107707326,LOC107573984,LOC107680310 coding downstream 92712 1879322 ~ 1896773 (-)
mei4 mei4 coding downstream 170092 1808105 ~ 1819393 (-)
LOC122325649 NA coding upstream 28202 2020381 ~ 2020592 (-)
LOC122325666 NA coding upstream 29452 2021631 ~ 2021843 (-)
LOC122325658 NA coding upstream 30697 2022876 ~ 2023087 (-)
LOC122325636 NA coding upstream 31938 2024117 ~ 2024326 (-)
LOC122325646 NA coding upstream 38019 2030198 ~ 2030409 (-)
G135480 NA non-coding downstream 111363 1877914 ~ 1878122 (-)
G135435 NA non-coding downstream 236538 1752733 ~ 1752947 (-)
G135434 NA non-coding downstream 237029 1752156 ~ 1752456 (-)
G135433 NA non-coding downstream 239682 1749595 ~ 1749803 (-)
G135430 NA non-coding downstream 243829 1745359 ~ 1745656 (-)
G135542 NA non-coding upstream 107817 2099996 ~ 2100241 (-)
G135546 NA non-coding upstream 366299 2358478 ~ 2358691 (-)
G135627 NA non-coding upstream 584953 2577132 ~ 2577488 (-)
G135629 NA non-coding upstream 587090 2579269 ~ 2579702 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 652002 2644181 ~ 2647081 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 113193 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 328949 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 417786 1546487 ~ 1571699 (-)
G135279 NA other downstream 878624 1110425 ~ 1110861 (-)
G135275 NA other downstream 883667 1103306 ~ 1105818 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other upstream 13370 2005549 ~ 2013527 (-)
G135548 NA other upstream 371874 2364053 ~ 2364824 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 748373 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1646110 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 1976584 3968763 ~ 3975258 (-)

Expression


Co-expression Network