ctsbb (ctsbb,LOC107557005,LOC107661356)


Basic Information

Item Value
gene id ctsbb
gene name ctsbb,LOC107557005,LOC107661356
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25190559 ~ 25198931 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218747.1
TGTTTTACTGCACAGGAGGTTTTTAACGGAGCAAGGATCTCAGTTTGTCACTTCGTGTGTCTTCAGCTTCGAGGACAGAGGAACAGAATCTGAGGCTCAGTCGTGGTCAGATGTGAATACGAGGTCAGGATGTGGCGTCTCTGTTTGCTGTCGTCTCTCCTGTCTCTGACCTCGGGCCGGCCGCGGTCTCCCGACGAACTGGTCGACTTCATCAACGCGGCCGGGACCACGTGGACGGCCGGTGTGAACTTCCAGAAGGTGACGCGCGAGGACCTGAAGTCTCTCTGCGGGACGATGCTGAAGGGCCCACGTCTGCCGGACACGGTGAAACACGGCACCGGCGCGAAGCTCCCGGACAGCTTCGACCCTCGGACGCAGTGGCCCTTCTGTAAGACCCTCGCTCAGATCCGGGACCAGGGCTCCTGCGGCTCCTGCTGGGCGTTCGGCGCGGTCGAGGCCATCTCCGATCGCATCTGCATCCACAGCAAAGGGTCCGTGTCCGTGGAGATCTCCGCCGAGGACCTGCTGTCCTGCTGCCAGACCTGCGGCTTCGGGTGTTCTGGAGGTTTTCCAGCAGAAGCCTGGGATTACTGGACTAAATCAGGTCTGGTGACTGGAGGACTTTATGGCTCTGATGTGGgctgcAGGCCGTACAGCATCTCTCCCTGCGAGCATCACGTGAACGGGACGCGTCCGCCGTGCTCCGGAGAACAGGACACCCCCGAGTGCACCGCCGCCTGCGATCCTCACTACAGCGTCCCGTACAAACAGGACAAACACTTCGGATATAAAGCGTATAACGTCCCCTCGGACCAGCAGCAGATCATGAGCGAGCTGTACAGCAGCGGACCGCTGGAGGCCGCCTTCACCGTCTACGAGGACTTCCTGCTCTACAAGagcgGTGTGTACCAGCACGTGAGCGGCTCTGAGCTCGGAGGACACGCTGTGAAGGTGCTGGGATGGGGCGAGGAGAACGGGACGCCCTACTGGCTCGTGGCCAACTCCTGGAACTCAGACTGGGGCGATAACGGTTATTTTAAGATCCTGAGAGGCCGGGATGAATGCGGGTTCGAGAGCGAGATGGTGGCTGGTGTTCCTCAGCTCTGATTCAACACCCGACCCTGCATCCAACCACCAGCACCAATAAAAACCACACATACATGTGTCTCCATGCTCCAGCCCTCACGCTGGCTCTAAAGCCATATACAGCGATCATTATCGAAAGCGAAACTGTCACAAAATAAAGAGATGTCATTTGCACGTA
>XM_043218748.1
TTACTGCACAGGAGGTTTTTAACGGAGCAAGGATCTCAGTTTGTCACTTCGTGTGTCTTCAGCTTCGAGGACAGAGGAACAGAATCTGAGGCTCAGTCTAGATTTGATGAAACGTGAGCCTGTTTTGTGCGGTTTCTCTCGGTAGTCGTGGTCAGATGTGAATACGAGGTCAGGATGTGGCGTCTCTGTTTGCTGTCGTCTCTCCTGTCTCTGACCTCGGGCCGGCCGCGGTCTCCCGACGAACTGGTCGACTTCATCAACGCGGCCGGGACCACGTGGACGGCCGGTGTGAACTTCCAGAAGGTGACGCGCGAGGACCTGAAGTCTCTCTGCGGGACGATGCTGAAGGGCCCACGTCTGCCGGACACGGTGAAACACGGCACCGGCGCGAAGCTCCCGGACAGCTTCGACCCTCGGACGCAGTGGCCCTTCTGTAAGACCCTCGCTCAGATCCGGGACCAGGGCTCCTGCGGCTCCTGCTGGGCGTTCGGCGCGGTCGAGGCCATCTCCGATCGCATCTGCATCCACAGCAAAGGGTCCGTGTCCGTGGAGATCTCCGCCGAGGACCTGCTGTCCTGCTGCCAGACCTGCGGCTTCGGGTGTTCTGGAGGTTTTCCAGCAGAAGCCTGGGATTACTGGACTAAATCAGGTCTGGTGACTGGAGGACTTTATGGCTCTGATGTGGgctgcAGGCCGTACAGCATCTCTCCCTGCGAGCATCACGTGAACGGGACGCGTCCGCCGTGCTCCGGAGAACAGGACACCCCCGAGTGCACCGCCGCCTGCGATCCTCACTACAGCGTCCCGTACAAACAGGACAAACACTTCGGATATAAAGCGTATAACGTCCCCTCGGACCAGCAGCAGATCATGAGCGAGCTGTACAGCAGCGGACCGCTGGAGGCCGCCTTCACCGTCTACGAGGACTTCCTGCTCTACAAGagcgGTGTGTACCAGCACGTGAGCGGCTCTGAGCTCGGAGGACACGCTGTGAAGGTGCTGGGATGGGGCGAGGAGAACGGGACGCCCTACTGGCTCGTGGCCAACTCCTGGAACTCAGACTGGGGCGATAACGGTTATTTTAAGATCCTGAGAGGCCGGGATGAATGCGGGTTCGAGAGCGAGATGGTGGCTGGTGTTCCTCAGCTCTGATTCAACACCCGACCCTGCATCCAACCACCAGCACCAATAAAAACCACACATACATGTGTCTCCATGCTCCAGCCCTCACGCTGGCTCTAAAGCCATATACAGCGATCATTATCGAAAGCGAAACTGTCACAAAATAAAGAGATGTCATTTGCACGTA

Function

symbol description
ctsbb Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis and regulation of catalytic activity. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in diabetes mellitus. Orthologous to human CTSB (cathepsin B).

NR:

description
cathepsin B precursor

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K01363 CTSB; cathepsin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218747.1 False 1264 mRNA 0.59 10 25190559 25198931
XM_043218748.1 True 1309 mRNA 0.58 10 25190559 25198927

Neighbor

gene id symbol gene type direction distance location
LOC122325043 LOC107671087,LOC107728123,LOC107661362,LOC107556999 coding downstream 1039 25169118 ~ 25189520 (-)
bphl bphl coding downstream 37439 25151212 ~ 25153120 (-)
psmg4 LOC107671085,LOC107661364,LOC107739191,LOC107728114,LOC107572584 coding downstream 40037 25148142 ~ 25150522 (-)
LOC122325515 LOC107739175,LOC107661358,LOC107728115,LOC107672942,LOC107567016 coding downstream 73880 25104238 ~ 25116679 (-)
wu:fi04e12 LOC107739175,LOC107672942,LOC107567016,LOC107661358,LOC107728115 coding downstream 87845 25086170 ~ 25102714 (-)
fdft1 fdft1,LOC107661354,LOC107671088 coding upstream 3310 25202241 ~ 25211596 (-)
gata4 gata4,LOC107671084,LOC107739180,LOC107557004,LOC107661355,LOC107728131,LOC107564601 coding upstream 13875 25212806 ~ 25223080 (-)
LOC122325309 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 coding upstream 271851 25470782 ~ 25561241 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding upstream 377098 25576029 ~ 25596184 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding upstream 398182 25597113 ~ 25609145 (-)
G141951 NA non-coding downstream 21960 25165238 ~ 25168599 (-)
G141941 slc22a23,LOC107739176,LOC107572580,LOC107578994 non-coding downstream 59367 25066735 ~ 25131192 (-)
G141943 NA non-coding downstream 70796 25068982 ~ 25119763 (-)
G141920 phactr1,LOC107739173,LOC107655832,LOC107557022 non-coding downstream 130638 25054807 ~ 25059921 (-)
G141936 NA non-coding downstream 138652 25046771 ~ 25051907 (-)
G141966 NA non-coding upstream 19598 25218529 ~ 25305703 (-)
G141972 NA non-coding upstream 78213 25277144 ~ 25325809 (-)
G141974 NA non-coding upstream 80796 25279727 ~ 25335044 (-)
G141979 NA non-coding upstream 94371 25293302 ~ 25294448 (-)
G141998 NA non-coding upstream 200620 25399551 ~ 25400241 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 338780 24838652 ~ 24851779 (-)
G141651 NA other downstream 543138 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 658196 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 672816 24254393 ~ 24517743 (-)
G141502 NA other downstream 1183894 24004687 ~ 24006665 (-)
mettl24 LOC107738893 other upstream 95913 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other upstream 127577 25326508 ~ 25377416 (-)
G142058 NA other upstream 449561 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 548736 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 851898 26050829 ~ 26054469 (-)

Expression


Co-expression Network