meis2b (meis2b,LOC107664830,LOC107668148,LOC107582109,LOC107712444,LOC104938729,LOC105017579)


Basic Information

Item Value
gene id meis2b
gene name meis2b,LOC107664830,LOC107668148,LOC107582109,LOC107712444,LOC104938729,LOC105017579
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6350830 ~ 6368755 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218758.1
tcacttGCGAGCGTTCGttctttaaaatcaatgaatgaacGTGGGCTGATACGACAAAcgtgaataaaacattacatttagcCAAAAGTTGGTGTGCTCTTAAATGGCGTTTCTattcaatttgttttgtttagaattTGGCCAAAAGCAACACTTCTTTCGCATCTTTTTTTATCACCGATccgtttttatatttaaatacagtacgTACAAATCATGCATTATGTGTtcatttttcctctttctctctttttcttttcttaacaGCCTGTACGCGGCTATTCGTTTCAAACTATAAGTGGTAACCTAAAACCAACACGATGAAAATTGCAATCGCAAGTCCGTTTAAATTGCCGAACGCAAAGCAAATGAAATGCCCCTGTGCGTCAGTCCTTGTGTTTTCATTCCGGTCGATCTCGTTTCCTTTACGCGCGTTTAAATATGACGACGAGACAGTCGCGCGTAATTCCCTCAGTGTCATTTATGAGCGAAAGCGCTTGGAATAAGAGCGAGATGCGTAACTGCCCGGCTTTTATAGCTTCccgtttaaaatatttttttcttccacgcattaacaaataaaaaaaaatgcataaaccaAGCAGCGCGAAGCCATAGCTTAAAACGAAACGCGGTTTATTTCATCACTAAAGCAGGACGTGGCGCGCAACCTGTCTACTGTATTTTaaagctgaaacaaaaaaaagtaaacttatTTAACTTCTCGATATAAATGCGATTTATAAGTTGTGACGCGCACGCGCCGAAGCGTTGACGGTTAAACAACGGGGCGGTCGAAATTTATAGTGTGTggtagatatatttttaaaggctcGAATGCCGTGATGCTCAGCAATTTGTTGAAATAAGGTCCATTCCCGGCGCGCTGATCTGATTTTagcgcttttaaaaataaagacaccCCACCCCTAGTAACAAAACGCGGAGGACGGCGGTGCGTCATCCGCGCGCGTATCCAATGCGAGCGCTCGCTGGCAGCTCGTGGTCAGTGCGCCCTTCTTTCTCGTGCTTTATGTAGAGGTGTCGAGCTGGTAACACCCACCGCGCTTCCCAGGCTCAGTCATCAGGGGTTCAGTCTCCTCGAGAGGAACCTGCTCCAAATCGCCAaggcaaaagcaaaaaaaaaaaaaaaaaaaaaaagcgtgggTCGCAAAGAGGGACCATGAGATCCGGATAGTTTTTCCTCGCGGTGTTTTGCCATGCCAGACACGAACGTCCCAGAATTTGGAAAGCTTCTTCTGACTTCGGGAAGTCTGTGAGGGGGTGAATTGAATTAGTCAGGGGGGGgagcgaatatatatataaggcgAACGCGTCGTTAAGTGTAGCCCATCCGTCGAGCGCGTTTTGGCGATACCCtcgaaatatttttttttttaaaaagtggctGAAAAGGAAGCGATCGGAAACTCTTCACGGGACATGCTCTGTCATCTCAACGGATTACCGACAGCTCAGTCCTCTTAAACCGGATGCGCAAAAGGAATTAAACCACTCAAATTGCTTTCCCCGTTGGATAAGGTCACGATTTGCACTTAACTTCAACAGAAGCGTCATATGCTGATGGCTCAACGGTACGAAGACCTTGCCCACTATGGTGGCGGTATGGATGGAGTTGGGGTCCCGACGTCCATGTACGGGGATCCGCACGCGCCTCGGCCCTTGCCGCAGGTTCACCATTTGAACCACGGGCCACCGCCGCACGCCAACCAGCACTACGGGGCCCACGCACCGCACAGCATCATGCCCAGCAGCATGGGCTCGGCTGTCAACGACGCACTTAAAAGAGACAAGGACCAAATTTACGGGCACCCGTTATTTCCGCTCCTGGCGCTGGTGTTTGAGAAGTGCGAGCTGGCCACATGCACGCCGAGGGAGCCCGGAGTCGCCGGAGGAGACGTGTGCTCGTCCGACTCGTTCAACGAGGACATCGCTGTGTTTGCCAAACAGATTCGGGCAGAGAAGCCGCTTTTTTCTTCTAATCCAGAGCTGGACAATTTGATGATTCAGTCGATACAAGTGTTGCGATTCCATCTTTTAGAACTCGAAAAGGTGCACGAGCTTTGCGACAACTTCTGCCACCGGTACATCAGCTGTTTGAAGGGCAAGATGCCCATTGACCTGGTCATCGATGAACGGGATGGGTGCAAGTCCGACTTCGACGACCTCTCGGGATCCTCGACGAACCTCGCAGATCACAATCCAGCATCCTGGAGAGACATGGACGACGCTCACTCCACTCCCTCGGTCGGGACCCCGGGGCCCTCCAGCGGGGGACATGCCTCTCAGAGCGGAGACAACAGCAGCGAACTAGGAGATGGCTTGGATAACAGCTTGGCGTCTCCGGGAACAGGGGACGAGGACGACCAAGACAAGAAACGGCAGAAGAAGAGAGGAATCTTCCCCAAAGTGGCGACCAACATCATGCGGGCGTGGCTCTTCCAGCATCTCACGCACCCTTACCCATCCGAAGAGCAGAAGAAGCAGCTAGCGCAGGACACAGGCCTCACCATCTTACAAGTGAATAACTGGTTTATCAATGCTCGAAGAAGAATCGTGCAGCCCATGATTGACCAGTCTAACAGAGCAGTAAGTCAAGGAACCGCTTACAGCCCCGATGGTCAGCCTATGGGCGGCTTCGTGCTCGACGGCCAACAACACATGGGTCTCCGGCCTGGCGGTCCCATGGGAGGAATGGGTATGAACATGGGTATGGATGGACAGTGGCACTACATGTAAACGCCTCCCCGCTTCCCAAATCATAAACGTTTTGATGGTGGCCTCAGGAATAGTCCCAGTGCTGGCCAGAGGCATGAGGAGTCCCGTCACATTCATCCTCACCTGATCACGCCCCGTCCGACCGCCTCCCGTCTTCACGAAAGACCTCCCAAATCTCTCACGGACCCCTCATCGTCTGGCCATCGTACCTCCAGCCGAAGGACCGTCTCTGCAGGAGCAccaacattacaaaaaaacaagacttgAAGCATTTGTGCCAAAAGAGACTTCTGAAAAGACGATTGGagatcttttctttttaaattatttatttattcttgtcaCACCATCAAGAAGCACGGGGACCACACCATTTGTGCACTTTTGCTCAACCATAGAATGGCCGCCCCAGACGCAAATATTCCACACCTCCTCACGCGCAGGTGCACACGCTCGTATTAAACGCATTTTAATGGTGGAATATAGTAAAAGATGCTAAACCCTTAAAGAACTGAAATGTGAGTgtatgatgatttttttttctttttttttcttttgggaaaTATTGTATGTTTGGGTTTGTGTCATTGACTAGTTGTTAGACCTTCGCATTCATGATTCTACAAAGACCGAAGGGAAACGAAACCGCTTGATGGGATCATTATGGCACACATCTGACACAGATTCCAGTATGTGAAACCGCAGAGTCTTCCCCTCGTGAGATGTTTCGAAAAGCATCGCTTAGGAAATGAGTTGTGCGTTTATTCGTCGATTTGGAGAGCAACAGTGCTCTGGTAAGGCTAAATATGCCTGGAGGAGTTTTTAAACCACTAGAGATGTTCCATTGtacataattatgtaaatgttatttgtaaaaCACATCAATGTCAAATAGGCATTCAGTCGagatcctttaaaaaaaaaattgagatgGGATATTGTTGTACATTTTGGTCCGTTCTCACTCTTGCTTTTCTCTATGGAAAAAGTCGATTATATGTTTGTTGATGTACTGATAAGTTTGATCGATCCTCCCGCTCTGTCCATTTTCCTTTTAGGAGTCTTTTAAAGCAGTACAGTATTTCTACACAGTCAAAAGTCGAATTCTTGtaataaatgcttcattttcaaaatgttaaa
>XM_043218759.1
TTTTGCATTTTCTTGTCGACGCCTCACGCGTTTGAGCGTGATGTTCGGCTCTAATATCGCCcgttgctttttattttgttaaatgtgtttggttttttttccatcGACAATGAGGCTCCGGAGAGAGGGCTGGAACGCGAGCTCGTTCTCGACGCGTAGTGTCTCGCGCGGCGGGTTTTAAAGACGGACGCGCCGCTAGGTGGGGATAGAAGGTAACGCGACTTTGAAATTGATCGTCGCGTTGGAAAGAACGGCGCACGTGAAACCAGAGCCCGGCGCAGGCAGGTTTTGCGGGACCCTCGCCGGATCCGAAGAACTAGAAGGAAAGTGTGGTGCGGCTCGAGCGCACGTCCTGACGGGTCAAGCAAAGGTCAATACTTTTGAAATTAAAGAGGATTATCATCGCGCCAACATGGGCGAAGAACGCTAGCATTTAAAGGTAGTCTAAAAACCGAAAATGTTCGTAACAgatttgggatttttttaaatttaaattaacacacctcactaaaaaaaatcattcaaatattattattattattattatttttatttatttttttagttgcaaaaactgtttgttttttaatatgcgAATGTATTTGTTCCTTTactttgatattaaaaataacgcGTACACcagtctaaaataaaatagtttattattaagttGTCGCGcttgaaaagtttatttatttactggtCTCGGCGTGTTTGCAGAAATGCATCCATCATCATCTTATTTTCAGTCACAACAATGCGCTTTAGGAggaatttctaaataaatattcacttGCGAGCGTTCGttctttaaaatcaatgaatgaacGTGGGCTGATACGACAAAcgtgaataaaacattacatttagcCAAAAGTTGGTGTGCTCTTAAATGGCGTTTCTattcaatttgttttgtttagaattTGGCCAAAAGCAACACTTCTTTCGCATCTTTTTTTATCACCGATccgtttttatatttaaatacagtacgTACAAATCATGCATTATGTGTtcatttttcctctttctctctttttcttttcttaacaGCCTGTACGCGGCTATTCGTTTCAAACTATAAGTGGTAACCTAAAACCAACACGATGAAAATTGCAATCGCAAGTCCGTTTAAATTGCCGAACGCAAAGCAAATGAAATGCCCCTGTGCGTCAGTCCTTGTGTTTTCATTCCGGTCGATCTCGTTTCCTTTACGCGCGTTTAAATATGACGACGAGACAGTCGCGCGTAATTCCCTCAGTGTCATTTATGAGCGAAAGCGCTTGGAATAAGAGCGAGATGCGTAACTGCCCGGCTTTTATAGCTTCccgtttaaaatatttttttcttccacgcattaacaaataaaaaaaaatgcataaaccaAGCAGCGCGAAGCCATAGCTTAAAACGAAACGCGGTTTATTTCATCACTAAAGCAGGACGTGGCGCGCAACCTGTCTACTGTATTTTaaagctgaaacaaaaaaaagtaaacttatTTAACTTCTCGATATAAATGCGATTTATAAGTTGTGACGCGCACGCGCCGAAGCGTTGACGGTTAAACAACGGGGCGGTCGAAATTTATAGTGTGTggtagatatatttttaaaggctcGAATGCCGTGATGCTCAGCAATTTGTTGAAATAAGGTCCATTCCCGGCGCGCTGATCTGATTTTagcgcttttaaaaataaagacaccCCACCCCTAGTAACAAAACGCGGAGGACGGCGGTGCGTCATCCGCGCGCGTATCCAATGCGAGCGCTCGCTGGCAGCTCGTGGTCAGTGCGCCCTTCTTTCTCGTGCTTTATGTAGAGGTGTCGAGCTGGTAACACCCACCGCGCTTCCCAGGCTCAGTCATCAGGGGTTCAGTCTCCTCGAGAGGAACCTGCTCCAAATCGCCAaggcaaaagcaaaaaaaaaaaaaaaaaaaaaaagcgtgggTCGCAAAGAGGGACCATGAGATCCGGATAGTTTTTCCTCGCGGTGTTTTGCCATGCCAGACACGAACGTCCCAGAATTTGGAAAGCTTCTTCTGACTTCGGGAAGTCTGTGAGGGGGTGAATTGAATTAGTCAGGGGGGGgagcgaatatatatataaggcgAACGCGTCGTTAAGTGTAGCCCATCCGTCGAGCGCGTTTTGGCGATACCCtcgaaatatttttttttttaaaaagtggctGAAAAGGAAGCGATCGGAAACTCTTCACGGGACATGCTCTGTCATCTCAACGGATTACCGACAGCTCAGTCCTCTTAAACCGGATGCGCAAAAGGAATTAAACCACTCAAATTGCTTTCCCCGTTGGATAAGGTCACGATTTGCACTTAACTTCAACAGAAGCGTCATATGCTGATGGCTCAACGGTACGAAGACCTTGCCCACTATGGTGGCGGTATGGATGGAGTTGGGGTCCCGACGTCCATGTACGGGGATCCGCACGCGCCTCGGCCCTTGCCGCAGGTTCACCATTTGAACCACGGGCCACCGCCGCACGCCAACCAGCACTACGGGGCCCACGCACCGCACAGCATCATGCCCAGCAGCATGGGCTCGGCTGTCAACGACGCACTTAAAAGAGACAAGGACCAAATTTACGGGCACCCGTTATTTCCGCTCCTGGCGCTGGTGTTTGAGAAGTGCGAGCTGGCCACATGCACGCCGAGGGAGCCCGGAGTCGCCGGAGGAGACGTGTGCTCGTCCGACTCGTTCAACGAGGACATCGCTGTGTTTGCCAAACAGATGATTCAGTCGATACAAGTGTTGCGATTCCATCTTTTAGAACTCGAAAAGGTGCACGAGCTTTGCGACAACTTCTGCCACCGGTACATCAGCTGTTTGAAGGGCAAGATGCCCATTGACCTGGTCATCGATGAACGGGATGGGTGCAAGTCCGACTTCGACGACCTCTCGGGATCCTCGACGAACCTCGCAGATCACAATCCAGCATCCTGGAGAGACATGGACGACGCTCACTCCACTCCCTCGGTCGGGACCCCGGGGCCCTCCAGCGGGGGACATGCCTCTCAGAGCGGAGACAACAGCAGCGAACTAGGAGATGGCTTGGATAACAGCTTGGCGTCTCCGGGAACAGGGGACGAGGACGACCAAGACAAGAAACGGCAGAAGAAGAGAGGAATCTTCCCCAAAGTGGCGACCAACATCATGCGGGCGTGGCTCTTCCAGCATCTCACGCACCCTTACCCATCCGAAGAGCAGAAGAAGCAGCTAGCGCAGGACACAGGCCTCACCATCTTACAAGTGAATAACTGGTTTATCAATGCTCGAAGAAGAATCGTGCAGCCCATGATTGACCAGTCTAACAGAGCAGTAAGTCAAGGAACCGCTTACAGCCCCGATGGTCAGCCTATGGGCGGCTTCGTGCTCGACGGCCAACAACACATGGGTCTCCGGCCTGGCGGTCCCATGGGAGGAATGGGTATGAACATGGGTATGGATGGACAGTGGCACTACATGTAAACGCCTCCCCGCTTCCCAAATCATAAACGTTTTGATGGTGGCCTCAGGAATAGTCCCAGTGCTGGCCAGAGGCATGAGGAGTCCCGTCACATTCATCCTCACCTGATCACGCCCCGTCCGACCGCCTCCCGTCTTCACGAAAGACCTCCCAAATCTCTCACGGACCCCTCATCGTCTGGCCATCGTACCTCCAGCCGAAGGACCGTCTCTGCAGGAGCAccaacattacaaaaaaacaagacttgAAGCATTTGTGCCAAAAGAGACTTCTGAAAAGACGATTGGagatcttttctttttaaattatttatttattcttgtcaCACCATCAAGAAGCACGGGGACCACACCATTTGTGCACTTTTGCTCAACCATAGAATGGCCGCCCCAGACGCAAATATTCCACACCTCCTCACGCGCAGGTGCACACGCTCGTATTAAACGCATTTTAATGGTGGAATATAGTAAAAGATGCTAAACCCTTAAAGAACTGAAATGTGAGTgtatgatgatttttttttctttttttttcttttgggaaaTATTGTATGTTTGGGTTTGTGTCATTGACTAGTTGTTAGACCTTCGCATTCATGATTCTACAAAGACCGAAGGGAAACGAAACCGCTTGATGGGATCATTATGGCACACATCTGACACAGATTCCAGTATGTGAAACCGCAGAGTCTTCCCCTCGTGAGATGTTTCGAAAAGCATCGCTTAGGAAATGAGTTGTGCGTTTATTCGTCGATTTGGAGAGCAACAGTGCTCTGGTAAGGCTAAATATGCCTGGAGGAGTTTTTAAACCACTAGAGATGTTCCATTGtacataattatgtaaatgttatttgtaaaaCACATCAATGTCAAATAGGCATTCAGTCGagatcctttaaaaaaaaaattgagatgGGATATTGTTGTACATTTTGGTCCGTTCTCACTCTTGCTTTTCTCTATGGAAAAAGTCGATTATATGTTTGTTGATGTACTGATAAGTTTGATCGATCCTCCCGCTCTGTCCATTTTCCTTTTAGGAGTCTTTTAAAGCAGTACAGTATTTCTACACAGTCAAAAGTCGAATTCTTGtaataaatgcttcattttcaaaatgttaaa

Function

symbol description
meis2b Predicted to enable DNA binding activity. Acts upstream of or within cardiac atrium morphogenesis and heart looping. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; heart rudiment; nervous system; neural plate; and pericardial region. Human ortholog(s) of this gene implicated in cleft palate, cardiac defects, and intellectual disabillity. Orthologous to human MEIS2 (Meis homeobox 2).

NR:

description
PREDICTED: homeobox protein Meis2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218758.1 False 3879 mRNA 0.47 13 6350830 6367966
XM_043218759.1 True 4617 mRNA 0.46 12 6350830 6368755

Neighbor

gene id symbol gene type direction distance location
actc2 zgc:86709,actc1,ACTC1,actc1a,LOC108414322,LOC105024319 coding downstream 29551 6317799 ~ 6321279 (-)
gjd2b gjd2b,LOC107740303,LOC107582173,LOC107549543,LOC105892965,LOC107582146,LOC107712441 coding downstream 35016 6312330 ~ 6315814 (-)
cgrrf1 cgrrf1,LOC107740293,LOC107664817,LOC107712438,LOC107582104 coding downstream 93383 6254715 ~ 6257447 (-)
nid2b LOC107712413,LOC107549538,LOC107549503 coding downstream 118163 6218511 ~ 6232667 (-)
zfp36l1b zfp36l1,zfp36l1b,LOC107729081,LOC107664815,LOC107695995,LOC107712436 coding downstream 152675 6193434 ~ 6198155 (-)
glrx5 glrx5,LOC107752683,LOC107664827,LOC107747371 coding upstream 99024 6467779 ~ 6470069 (-)
flrt2 flrt2,LOC107752686,LOC107664820,LOC107564782,LOC107701229,LOC107570088,LOC107706955 coding upstream 304475 6673230 ~ 6708654 (-)
LOC122325354 LOC107742115,LOC107664810 coding upstream 752596 7121351 ~ 7124683 (-)
LOC122325011 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding upstream 787512 7156267 ~ 7158619 (-)
LOC122325548 LOC107742115,LOC107664810 coding upstream 853881 7222636 ~ 7225982 (-)
G136440 NA non-coding downstream 103939 6246263 ~ 6246891 (-)
G136416 NA non-coding downstream 145392 6205090 ~ 6205438 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding downstream 205169 6128498 ~ 6145661 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding downstream 300197 6048968 ~ 6050633 (-)
G136368 NA non-coding downstream 490207 5859953 ~ 5860623 (-)
G136506 NA non-coding upstream 14677 6383432 ~ 6398110 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding upstream 758458 7127213 ~ 7130585 (-)
LOC122324389 NA non-coding upstream 764993 7133748 ~ 7139291 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding upstream 782635 7151390 ~ 7151754 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding upstream 783713 7152468 ~ 7251872 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other downstream 47854 6274754 ~ 6302976 (-)
zpax2 NA other downstream 419708 5924066 ~ 5931122 (-)
G136357 NA other downstream 646919 5701679 ~ 5703911 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other downstream 752164 5591338 ~ 5598666 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 990761 5161206 ~ 5360069 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 42207 6410962 ~ 6414013 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other upstream 64007 6432762 ~ 6451499 (-)
G136688 NA other upstream 756993 7125748 ~ 7228963 (-)
G136707 NA other upstream 928106 7296861 ~ 7305724 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other upstream 966633 7335388 ~ 7340455 (-)

Expression


Co-expression Network