pbk (pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197)


Basic Information

Item Value
gene id pbk
gene name pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20301406 ~ 20304874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218776.1
GTTTAGCTTTACGTACGTTTGACGTCAAGCTAACCGGTGCTTTTTGAATCCGAGCGCGTATTTCAGCTTCTCTGAAGTTcttatataatttttagagAAATGGAGGCCAACAAAGAATCACCTAGTGCCTTTAAAACGCCTTGCAAGCCTGCAAAAATGAGAAGCCCAGTCAGTTCATGTGGAACCCCAGTCACTATTCCTGCTTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTCTATCTCATGAACAGGATGGGTAAGCACACTCACTCACCATGGGCCATTAAGAAGATCAATAGCAAATGTGTAAAAAGTCAAATGACAGTTTATCAGAAGCGTCTGTGCGAGGAGGCAAAGATCTTAAAAGACCTGCACCACCCCAACATTGTTGgtTTCAGAGCTTTTACCACTGCAAAGGATGGCTCTAAGTGTTTGGCGATGGAGTTTGGCGGAGAGCAGTCTCTGAATGACCTCATTgagaagaggagagaggagggTCTACAGGCATTTCCAGTGGCCACTATTGAAAACGTGGCTCTTCATGTGGCACGTGGTTTACAGtatTTGCACaatgagaaaaagcttttgcaTGGAGACATGAAGTCATGCAACGTTGTCGTCAAGGGCGACTTTGAAAGCATCAAAATCTGTGATGTTGGTGTGTCACTGCCACTGGACGAAAACATGCAGGTGAATGATCCAAAAGCCCACTATATAGGGACAGAGCCGTGGAAGCCTAAGGAAGCTTTGGAGGATGGAGTTATCACAGACAAAGCTGATATATTTGCGTATGGACTCACTCTGTGGGAGATGATGACACTTTCTGTTCCTCACCTGGAGATACTGGACACTGAGGGGGACGATGACGATTGTGATGATACCTTCGATGAGGATGATTTTGATGAAGATGCGTATTATGAGAGACTGGGAACTCGGCCTGCTTTGGACGCAGACACTCTTGGAGGGGCTTATCAGAGGATGGTGGAGCTCTTCTGTCTGTGTACAGAGGAAGACCCTCATAAACGACCTTCTGCAGCTCACATAGTTCAGGTGCTGGAATCAAACACCCAGCTTTGTGACAAAAGCAGTGAGGTCATTGtaattgattaaatgtttaCTGTTCGTTTCCTGTCAAATATACTGTTGGGTCTGGTTGCTTTTCTGTCTATAGTCTTTCTGTCTGCGTTTTCACATTCCTAGTACTTTTATGCTGTCGtgttatgtatgtttttatgtactCTATTGACTTTCAGTGATTCTAAATACAGTAGTTGcagtgcaatttatttaaattgattatttaaattgtcatttagcagacacttttatccaaatgaggacaatggaagcaatcaaaacaaaagaacGTGCTGTAACAAGTCTCAGTTATCATAACgcagtaaggttttttttatacgtTGTATAATAAAGGAGAATAGCAAGCTAGTGTTAGAGgcctttttttgcttttgttaattgtataagtaaaattaaaatgaactatgGTCTTAGCAAAATCAGCACACACATCTGccttatgaattattttaattttacaatctTTCTGGAtgggaattatttttttttatgacaaaggGCAAGTCCTTactataataaaagtaatttatgtaACATGGAAATATCCACCTGAAGTTAATATGCCCTCTTGTGCCATGTGATATATTCTAAactaagtgtttttaaaattgtgttgcTATGGATGCATATGTTATTGCATGGGCCagttgtactgtaaaatattaaatgttaaccaacagaa

Function

symbol description
pbk Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

NR:

description
lymphokine-activated killer T-cell-originated protein kinase homolog isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08865 PBK; PDZ-binding kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218776.1 True 1792 mRNA 0.40 8 20301406 20304874

Neighbor

gene id symbol gene type direction distance location
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding downstream 5247 20293294 ~ 20296159 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding downstream 37556 20258253 ~ 20263850 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding downstream 59095 20230975 ~ 20242311 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding downstream 71585 20173548 ~ 20229821 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding downstream 230129 20069406 ~ 20071277 (-)
LOC122324455 slc35d3,LOC107727602,LOC107676236,LOC107675071,LOC107717122 coding upstream 1765 20306639 ~ 20311285 (-)
pex7 pex7,LOC107727680,LOC107676274 coding upstream 6550 20311424 ~ 20328698 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC107598074 coding upstream 25816 20330690 ~ 20334913 (-)
tpd52l1 rnf217,tpd52l1,LOC107727670,LOC107676269,LOC107602193,LOC107675045,LOC107716996,LOC107602194,LOC107676250,LOC107675093,LOC107727644 coding upstream 68311 20373185 ~ 20407062 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding upstream 291389 20596263 ~ 20616215 (-)
G140328 NA non-coding downstream 14411 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 33140 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 133408 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 391759 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 499738 19800522 ~ 19801668 (-)
G140413 NA non-coding upstream 321781 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 431714 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 687647 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 691492 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 740951 21045825 ~ 21049976 (-)
G140277 cad,LOC107602171 other downstream 238429 20061602 ~ 20062977 (-)
G140227 cad other downstream 241803 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 686204 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 997438 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 1038454 19261466 ~ 19262952 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 105755 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 329422 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 663314 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 784530 21089404 ~ 21091008 (-)
G140616 NA other upstream 893836 21198710 ~ 21278741 (-)

Expression


Co-expression Network