tfap2d (tfap2d,LOC107690996,LOC107593304,LOC107721448,LOC107697209,LOC107550400)


Basic Information

Item Value
gene id tfap2d
gene name tfap2d,LOC107690996,LOC107593304,LOC107721448,LOC107697209,LOC107550400
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21401025 ~ 21410649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218787.1
AAGGGACCTACGACATCAGCCGGAGAAATACCCAGCAAGTACAAAATCCGAGCCAGGGAGCGCTTTGTGCAGAGGGGAGGCATTTCAGCCGCTTTTACCGACTGCGCGAGGCGACATTTCATTTTCACGCGctattttggggattttttttctttcgttcgTCCAACAGCGCGAGGAAATCGGGTTATTGGATCGCGAGAATGTCAGCCACATTTCCGGGACTGGTGCACGACGCGGAGATACGTCACGACGGATCAAACAGCTACCGTTTGATGCAACTCGGATGCTTGGAATCTGTGGCCAACTCGTCTGTCGCTTACTCTTCATCGTCTCCGCTCACATACCCAGCTACCGGAACCGAATTTGCCTCCCCGTATTTTCCCACGAACCACCAGTACACGCCCTTACACCACCAGTCCTTCCACTACGAGTTCCAGCACAGCCACCCGGCCGTGAACCCGGATGCGTACTCGTTAAACTCTCTCCACCACTCGCAGCAGTATTACCAGCAGCTCCATCACGGCGAACCGGCGGACTTCATCAACCTTCACAACGCCCGCGCGCTCAAGTCCTCGTGCCTGGACGAGCAGCGGCGGGAACTGGGCTGTCTGGACGCGTACCGCAGGCATGACCTGTCAATCATGAGCCACGGCTCTCAGTACGGCATGCACCCCGAGCAAAGACTGCTGCCCGGGGCGGGTCTGGGGCTGCCGCCACCGGGGGCAGATGACCTACAGGGATCTGTAGACGCGCAATGCGGACTCGTGTTAAATGGACAAGGTGGAGTGATTCGGAGAGgTGGCACGTGCGTAGTGAACCCTACAGACCTGTTCTGCTCTGTACCAGGAAGACTTTCTCTACTCAGCTCTACCTCAAAGTACAAAGTCACCATAGCTGAAGTCAAACGTCGCCTGTCTCCTCCAGAGTGTCTCAATGCCTCACTGCTCGGCGGGATTTTAAGACGGGCCAAGTCAAAGAACGGCGGTCGCTGCCTCAGGGAGAAACTGGACAGGTTGGGACTCAATCTCCCAGCAGGCCGCAGGAAAGCAGCAAACGTCACGCTGTTGACCTCTTTAGTGGAAGGGGAAGCGCTACATCTGGCTCGAGACTTTGGTTACACCTGTGAGACAGAGTTTCCCACCAAAGCGGTCGGGGAGCATCTCGCCCGGCAGCATACGGAACCAAAGGAACAGAATGCGCGCAAGAAAATGGTGCTGGCCACCAAGCAGATCTGTAAGGAGTTTCAGGATTTGTTAAGTCAGGATCGATCTCCGCTCGGTTCCTCTAGACCAACACCTATTCTGGACTTGGACATTCAGAGACATCTAACACACTTCAGTCTGATCACGCATGGATTCGGCACCCCAGCGATTTGCGCGGCTCTTAGCACCTTTCAAACGATTCTCAGCGAAATGCTTAATTACCTGGAGAAACACTCGGCCAATAAGAGCACGGGAACGCCGGACACCAATCAGATCAACTCCAACTCGGACAAAACACTTCGCAAAGCCAACGAGGCACAGACGAAAGACGGTAAAATCGAGAAAACGGAATGACTCTGACACAGGAGTGACCGCTTTCCCACTTCCTGATCCGAGCCCTGATGGGCGGGCCTCGTTCAGGGCGTGGCTACTGGGGGCGGGGTTACAGGGTTTTTATTCCATATGcgttttatttatacaactGGCATAACTTCCTATGACCTCAGCTTTCCCTGTACGAGAGTCTGTCTGTATGTACAAACCAGTCACATCATTCTCACTGCCCGACGACCAACGCGAACCATTTTCGTTATTTTCTAAGTTATCGAAGAAGTTATTTTGCTTAAAGTTTGTCTGTATgtaattagtttaaataatgattttaaaaaaatgcaatatcttTTATTAAAAGACTCACATTCCATTTCTGGCCAGACCCAATTTGAGGTCAGTTTGAGACTGTAAATTATTACAGGTAACTTTCCCTGTTAGTTACTGTATATTGTGCATGTTAAACTTTGTACACCATCTGAAACTGACGTTCCCCACTGTTGTTCCAGAACACGAACTCTTGACTGCATTtgtaaaaaagttatatataaatatataaattcaatcTTTTCTTGTAGGCTTTGAACTACATATATGAAATAACCCTACATGCAAACTACTGGTGTTCAATAAAGCATATTGCTCAAAGTCTTATATTAA
>XM_043218788.1
TATCACCTCACAAAAAAtcgttttaatttcatttcattcagcgTAGCGTGGCATTGAAGGGAAATCGCGATCACTTAAGAGTTAAGACTTCTGAGGGGAGTTTGCTGCGAGGCGAGGAGAAATACCGTGTGTTTGTTTCTAGCGAAAATGGCTTTTACTGTTAGTTTTATTCAGTTCTTTTTCTGTGGCGAATATGGCTCTCTGGAGTTCATGTAAAAGTCTCCGTCGTGATTGGAACCGTTTGCTCGttcttttcatatatatataaatatatatatatgccataaTTATTAGTCGTGCAGACTCTCTTGTCTTGTGCTTACCTGCTGAGAAACGGCCGTAGACTCTTGGCACAAAACGGCTTTTAATAGCGTTTGCGCGgatgcagtaataataatacagtcaAATAACAAACTCCGCGGCAAATGATAGACAAgtgagggaggaaaaaaaaaacgctgtgAGCTCGTGGAGCAGTTTGCAGTGTGTTTCACGCACTCCCTCCCAGGCACGGAGAGATGACATCGCCGTCAGATACGTCACGACGGATCAAACAGCTACCGTTTGATGCAACTCGGATGCTTGGAATCTGTGGCCAACTCGTCTGTCGCTTACTCTTCATCGTCTCCGCTCACATACCCAGCTACCGGAACCGAATTTGCCTCCCCGTATTTTCCCACGAACCACCAGTACACGCCCTTACACCACCAGTCCTTCCACTACGAGTTCCAGCACAGCCACCCGGCCGTGAACCCGGATGCGTACTCGTTAAACTCTCTCCACCACTCGCAGCAGTATTACCAGCAGCTCCATCACGGCGAACCGGCGGACTTCATCAACCTTCACAACGCCCGCGCGCTCAAGTCCTCGTGCCTGGACGAGCAGCGGCGGGAACTGGGCTGTCTGGACGCGTACCGCAGGCATGACCTGTCAATCATGAGCCACGGCTCTCAGTACGGCATGCACCCCGAGCAAAGACTGCTGCCCGGGGCGGGTCTGGGGCTGCCGCCACCGGGGGCAGATGACCTACAGGGATCTGTAGACGCGCAATGCGGACTCGTGTTAAATGGACAAGGTGGAGTGATTCGGAGAGgTGGCACGTGCGTAGTGAACCCTACAGACCTGTTCTGCTCTGTACCAGGAAGACTTTCTCTACTCAGCTCTACCTCAAAGTACAAAGTCACCATAGCTGAAGTCAAACGTCGCCTGTCTCCTCCAGAGTGTCTCAATGCCTCACTGCTCGGCGGGATTTTAAGACGGGCCAAGTCAAAGAACGGCGGTCGCTGCCTCAGGGAGAAACTGGACAGGTTGGGACTCAATCTCCCAGCAGGCCGCAGGAAAGCAGCAAACGTCACGCTGTTGACCTCTTTAGTGGAAGGGGAAGCGCTACATCTGGCTCGAGACTTTGGTTACACCTGTGAGACAGAGTTTCCCACCAAAGCGGTCGGGGAGCATCTCGCCCGGCAGCATACGGAACCAAAGGAACAGAATGCGCGCAAGAAAATGGTGCTGGCCACCAAGCAGATCTGTAAGGAGTTTCAGGATTTGTTAAGTCAGGATCGATCTCCGCTCGGTTCCTCTAGACCAACACCTATTCTGGACTTGGACATTCAGAGACATCTAACACACTTCAGTCTGATCACGCATGGATTCGGCACCCCAGCGATTTGCGCGGCTCTTAGCACCTTTCAAACGATTCTCAGCGAAATGCTTAATTACCTGGAGAAACACTCGGCCAATAAGAGCACGGGAACGCCGGACACCAATCAGATCAACTCCAACTCGGACAAAACACTTCGCAAAGCCAACGAGGCACAGACGAAAGACGGTAAAATCGAGAAAACGGAATGACTCTGACACAGGAGTGACCGCTTTCCCACTTCCTGATCCGAGCCCTGATGGGCGGGCCTCGTTCAGGGCGTGGCTACTGGGGGCGGGGTTACAGGGTTTTTATTCCATATGcgttttatttatacaactGGCATAACTTCCTATGACCTCAGCTTTCCCTGTACGAGAGTCTGTCTGTATGTACAAACCAGTCACATCATTCTCACTGCCCGACGACCAACGCGAACCATTTTCGTTATTTTCTAAGTTATCGAAGAAGTTATTTTGCTTAAAGTTTGTCTGTATgtaattagtttaaataatgattttaaaaaaatgcaatatcttTTATTAAAAGACTCACATTCCATTTCTGGCCAGACCCAATTTGAGGTCAGTTTGAGACTGTAAATTATTACAGGTAACTTTCCCTGTTAGTTACTGTATATTGTGCATGTTAAACTTTGTACACCATCTGAAACTGACGTTCCCCACTGTTGTTCCAGAACACGAACTCTTGACTGCATTtgtaaaaaagttatatataaatatataaattcaatcTTTTCTTGTAGGCTTTGAACTACATATATGAAATAACCCTACATGCAAACTACTGGTGTTCAATAAAGCATATTGCTCAAAGTCTTATATTAA

Function

symbol description
tfap2d Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development; regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in midbrain; optic tectum; retina; and tegmentum. Orthologous to human TFAP2D (transcription factor AP-2 delta).

NR:

description
transcription factor AP-2-delta-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09178 TFAP2D; transcription factor AP-2 delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218787.1 False 2192 mRNA 0.50 8 21401025 21410649
XM_043218788.1 True 2487 mRNA 0.48 8 21401282 21410649

Neighbor

gene id symbol gene type direction distance location
hadhb hadhb,LOC107719432,LOC107721451,LOC107690999 coding upstream 76251 21315465 ~ 21324774 (+)
gareml LOC107691001,LOC107593273,LOC107550383,LOC107697211,LOC107719372,LOC107721452 coding upstream 95663 21287764 ~ 21305362 (+)
LOC122325408 prep,LOC107691002,LOC107697213,LOC100698444 coding upstream 114780 21275650 ~ 21286245 (+)
efhc1 efhc1,LOC107593305,LOC107721439,LOC107691013,LOC107719433,LOC107697121,LOC107575367 coding upstream 150628 21242175 ~ 21250397 (+)
LOC122324614 LOC107593306,LOC107691005,LOC107697122,LOC107719434,LOC107745903,LOC107721440,LOC107573326 coding upstream 158880 21203325 ~ 21242145 (+)
tfap2b tfap2b,LOC107697208,LOC107719371 coding downstream 4212 21414861 ~ 21427140 (+)
LOC122324300 kif3c,LOC107690993,LOC107593268,LOC107697206,LOC107721442,LOC107719402 coding downstream 123855 21534504 ~ 21550024 (+)
dtnba LOC107721443,LOC107685345,LOC107593267,LOC107550403 coding downstream 146116 21556765 ~ 21581534 (+)
dnmt3aa LOC107593266,LOC107721450,LOC107685348 coding downstream 172963 21583612 ~ 21621071 (+)
gpatch2 LOC107708325,LOC107593261,LOC107685352,LOC107550410 coding downstream 246014 21656663 ~ 21664934 (+)
G140523 NA non-coding upstream 373556 21027000 ~ 21027469 (+)
G140506 crnkl1,LOC107669451,LOC107559132,LOC107704074,LOC107548429 non-coding upstream 427456 20972578 ~ 20973569 (+)
G140406 NA non-coding upstream 767221 20632724 ~ 20633804 (+)
G140381 clvs2,LOC107675107 non-coding upstream 784812 20564340 ~ 20616213 (+)
G140379 NA non-coding upstream 799648 20553100 ~ 20601377 (+)
G140673 NA non-coding downstream 19203 21429852 ~ 21430052 (+)
G140686 NA non-coding downstream 23944 21434593 ~ 21434796 (+)
G140708 NA non-coding downstream 71978 21482627 ~ 21483277 (+)
G140707 NA non-coding downstream 72956 21483605 ~ 21488243 (+)
G140691 NA non-coding downstream 106142 21516791 ~ 21518976 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 199063 21168775 ~ 21201962 (+)
G140533 NA other upstream 298515 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 609322 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 726636 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 808866 20554113 ~ 20592159 (+)
G140785 NA other downstream 433497 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 1061112 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 1096078 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 1333763 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1432156 22842805 ~ 22860327 (+)

Expression


Co-expression Network