nr2e1 (nr2e1,LOC107602776,LOC107726424,LOC107726614,LOC107601200)


Basic Information

Item Value
gene id nr2e1
gene name nr2e1,LOC107602776,LOC107726424,LOC107726614,LOC107601200
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16984344 ~ 16991803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218838.1
CAAAGTCACTCACCAAGGCTCCGGGGCTGAGACGCTCATGTTGTACTTTTTAAGCTGGCGTTGAGCGGTACAGTGCTAGCTCGGGCTCCAGCGTTTCTCCATTAGTTGCATCAAGTTTCCGCGGCGCCGAGAGACCGGGGACCGGTTTGGGCATACGCTGTTTGCGGCGCTGCATCCATCGCGTCAGTCAACGGTCTGGATTCTAATTTGCTGAAACACAAGAGGAGCGACTCGGACACAATCAAAAGAAAACTCCAACGGAAAGCTGAGGACCAGCCGGCCGCCGCAAACCGGATGCTACACTTGtgcttgtaatttaaaaaaaaaaaaacgagtcaAAGCGCGTTAAGACTCCCCTGGGCCTGAAAAGTAAAAGTTTGAACGCGGTTTTCTTGGAGCAGAGGTCTTCAACATGAGCAAGCCCGCTGGTTCAACAAGTGGTTGTCTGGATATTTTAAACGTCAAATCCAGTCGGATTTTGGACATACCGTGCAAAGTGTGTGGAGACAGAAGTTCCGGAAAGCACTACGGTGTTTACGCGTGCGATGGTTGCTCGGGGTTTTTCAAGAGGAGTATAAGAAGAAACAGAACGTATGTCTGCAAATCTGGCACACAGggCGGCTGTCCTGTAGACAAGACGCACAGAAACCAGTGCCGCGCCTGTCGCTTGAAAAAGTGTCTAGAAGTTAATATGAATAAAGATGCCGTGCAGCACGAGAGAGGACCGAGGACTTCAACCATCCGAAAGCAGGTGGCACTGTATTTCCGAGGGCATAAAGAGGTGAACGGTTCGTCGACCCATTTCCCATCCACGTCTATCCCGGGGCCGCCGTTTTTCACCACAGTCACGCAGCTGGAGCCTCACAATCTGGAGTTAAACACGGTCACGAGCACACCGGAACGACAGGCCATTGTAGGGCTCGCCCAGCCCACACCGAAGTATCCTCATGAAGTTAGCGGCAATCCCATGTACCTGTATGAAGTGGCGACCGAGTCTGTGTGCGAGTCAGCGGCGCGCCTGCTCTTCATGAGCATTAAATGGGCCAAGAGCGTCCCGGCCTTCTCCACACTTCCTCTCCCGGACCAGTTGATCCTTTTAGAAGACGCTTGGCGGGAACTGTTCGTGTTGGGTATAGCGCAATGGGCCATTCCGGTGGACTCCAGCACCCTCCTAGCGGTTTCAGGAATGAACACGGAGAACACGGATTCCCAGAGGCTCAACAAAATTATCGCGGAGATCCAGGCGCTGCAGGAGGTCGTGACGCGCTTCCGCCAGTTAAGACTGGACGCCACGGAGTTCGCCTGCCTCAAGTGCATAGTCACCTTTAAAGCAGTTCCAACACACAGCGGTTCGGAACTGAGGAGCTTTCGCAACGCCAGCGCCATCGCCGCCCTTCAGGACGAAGCCCAGCTTACTCTAAACAGCTACATCCACACCAGGTATCCCACTCAGCCGTGTCGCTTCGGCAAACTGCTGCTGCTCCTGCCTGCTCTACGCTCGGTCGGTCCTTCCACCATCGAAGAGGTGTTCTTCAAAAAGACCATCGGAAACGTGCCCATCACGCGACTGCTCTCCGACATGTACAAATCCAGTGATATATGAGCTACCGtgagacagagaaaaagaaaacaaacgtATCTTTGACCTTGGCATTCGCATGGACGCTGGGACGCTGTGGATGATACCAGACACCCTAATGTGATACTTCACGCACTTGTTTGGAGAACAAAGCTCTACCAATGTCAAGACGTTATTACGCAGGgaaactataaaacaaacaaaagactgAATCTCTATCGTTCGAGCTTACTgcttagaaaagaaaagaaaaaaagtaaccaGTAATTTTCTAATTGATTTACttttaatctatttaagttCGTTTATGGAAGTAACTTAACAAGCTTAATCTGTTCTTGTTCTATCaagatttaaatacaaaattatctTAGTTTGTAGTCATATATTTGAATGGAGTGTCCGTGAGGTTATGTACAATCATTCATTTCAAAACGGGACGTTTTATTGTGTCCAATTGACCAAGTACCTTTATGACCAATGCTGTTTTTGATTTCAGCACCATTATCATCCATTTGTCCACGAGAACtttgaagaaaaccaaaaaaaaaaatatatataaaaaacaaacaaaccatgaGGTATGTCGCAGGGAAGTAGGTCGCTGTCCCTTTGACATAGTGCTGAAAACCAAAGGCCCGTGAGTCAGAACTGAAGAGCAAGATCATTCCTGTTTTACCTTCTAGCAGAAGCTCCAACTTTAATCAAAACACTTGAACCAGCTAATCAGGTTTACTTGAAACGTACACTGAAAGGTTGGAATTAATCTCtgcaggaaggcagcaggactgTGCATTACTGACTCGATGCATCACATAATTACCTACTGAAGTGACTGGGAGGCCACAGCACCCACACCCTGTGACCTTGACAGAAGATTAGGGTTCATAGGCAGGGCATCCTCTGGATACAGATCTGTCGGCATTGTGAGTTTTCTGTGCGCCCActctgaaaatgtaattttaaaaagttgtttctgCTCAATCCACGGTCCATGTCAGAGGTGGCCATTTTAAACCTTTGTTTGACTAGCTACTAACCCTGGAAAAGAGACACCGCGATCAGCACTTGGATTTGCTTTTGTAGTCTGTAAATACATTTCTCGTTGTACAGTGATAATTTTTGTGAAAGTTGTTCTAAGatattagaataaatattgaatattga

Function

symbol description
nr2e1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218838.1 True 2746 mRNA 0.47 9 16984344 16991803

Neighbor

gene id symbol gene type direction distance location
afg1lb lace1b,LOC107679503,LOC107726636,LOC107601203,LOC107726402 coding downstream 14303 16949429 ~ 16970041 (-)
foxo3b foxo3b,LOC107679488,LOC107601202,LOC107726619,LOC107601425,LOC107726429,LOC107696126 coding downstream 37166 16921638 ~ 16947178 (-)
armc2 armc2,LOC107679492,LOC107601205,LOC107696124,LOC107726616,LOC107726428,LOC107601411 coding downstream 72412 16896561 ~ 16911932 (-)
cep57l1 LOC107679495,LOC107726623,LOC107601208,LOC107696099,LOC107726414 coding downstream 125734 16855295 ~ 16858610 (-)
grm1a grm1,grm1a,LOC107679500,LOC107696122,LOC107726479 coding downstream 144282 16814705 ~ 16840062 (-)
nbas nbas,LOC107602494,LOC108439588 coding upstream 160540 17152343 ~ 17286892 (-)
smek1 smek1,ppp4r3a,LOC107726626,LOC107555622,LOC107696138,LOC107698404,LOC107601285,LOC107726461 coding upstream 422664 17414467 ~ 17424811 (-)
paplnb LOC107698340,LOC107555612 coding upstream 436703 17428506 ~ 17440011 (-)
LOC122325537 LOC107698338,LOC107555613,LOC107726610 coding upstream 461239 17453042 ~ 17455437 (-)
rock2b LOC107555625,LOC107698402,LOC107696174,LOC107726463,LOC107726633 coding upstream 463934 17455737 ~ 17481534 (-)
G139145 NA non-coding downstream 37804 16850554 ~ 16946540 (-)
G139149 NA non-coding downstream 87961 16860326 ~ 16896383 (-)
G139148 sesn1,LOC107726430,LOC107601436 non-coding downstream 92884 16889939 ~ 16891460 (-)
G139147 sesn1,LOC107601204,LOC107679493,LOC107601436,LOC107696127,LOC107726620 non-coding downstream 124088 16859343 ~ 16860256 (-)
G139139 NA non-coding downstream 139176 16843218 ~ 16845168 (-)
LOC122325296 NA non-coding upstream 51844 17043647 ~ 17116946 (-)
G139300 NA non-coding upstream 132083 17123886 ~ 17124259 (-)
G139301 NA non-coding upstream 133020 17124823 ~ 17125248 (-)
G139302 NA non-coding upstream 133634 17125437 ~ 17125910 (-)
G139317 NA non-coding upstream 344204 17336007 ~ 17336320 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 522128 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 617545 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 879617 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 990699 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 1139770 15844354 ~ 15844574 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 355003 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 809599 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 1351660 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 1414224 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 2262931 19254734 ~ 19256272 (-)

Expression


Co-expression Network