rmdn3 (rmdn3,LOC107593256,LOC107685363,LOC107719355,LOC107697192)


Basic Information

Item Value
gene id rmdn3
gene name rmdn3,LOC107593256,LOC107685363,LOC107719355,LOC107697192
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21787959 ~ 21794143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218883.1
AGGGCGCGCTAatgctctccctctctcacgcAAACGCTCCTGACGCCTCCTGTCAAACAGCGTGAGTTTGATGGGATTGAGATATTtagtctttaaataaataatcgaGAATTACAGGATGAGCCGGAGCTGTGTTTACATCTCTGAATCATGAGGATAACGAGGGATAACGCGACGGCTAGTTAGATCCGCGTGAGAGAAACGCAGATGCGCCGATAGCAGAGGATTCAGGGGGATTTTACGCGCGGTCGGCGATGAGCTGGCTCGGCAGGAACGCCGCGATCGGTCTCGGCGTCGGTGTGACGATCAGCACCGGCCTGATCGCATTATTGATCATTAAGGAAGCTCTCAGGAGGAGAAACCGCCGCGGCCGCCTGGTGCTTCACAACGCGAGCTCCGCGCTGCCGAACGACATCGtagACTCCGCCGTGAGCGGGTTGTCTCCTGAGCAGCAGGTGGAGCTGAGGAAGACTCTGGATGAGGTGATGAAGAGCGTGTCCGGTCTGAGGAACGAGATCGCGGAGCTTCGAGAGGGTCTGAGGGACATCAGCGCCACCATCGCTGAAGACGTCAAGAAGACGGTGGAGGAAAGTCAGAGATCGCGTCGGAGGCGTACGCTGATGCCGAGGGAGCGCTCCGAGTCCATGAGCTCCAGCTCCATTTACTTCACCGCCAGCGCCGGGGTCGCCAGCCTCTGTGACGACAGCGAGGTCGGATACTCCACGGCTTACTCCAACGCAGAGTCCGATTACACAGACCGAGAGACGGATCGCGATGGTGAGGACGATGGGAGGGActcggaggaggaggaggaggatgaagatgaagatgaagatgagagCTGCGCTACTGTGCTCACGCTGAGACACGACGACTCGCAGGCTGAGGAGGAGGACGATGAAGAGGCCGGGCTCATGGTGGACTGTTTAGCAGATATTCCTAGCCCTGAACTCGCCCTCCTGCTCGCCCAGTGTGATCTGCTGCATGCAGGGGATTCTGGGAAAAAAGCAGAGGGCTTCCAGCTCTTGATGGAGAACAGACCCCTGTATGCTGATAACGTGGAGTTCATGTGGCGACTGGCTCGTGCCTACAGCGACATGTGTGAGACAGCGGACaacagagaagaaaagagaaactaCGCCGAGCAAGGCCATTATGAGGCAGAGGCGGCGCTGACGAGGAACGAACTGAGCGCTGATTGTCACAAGTGGTTTGCCATCCTGGCGCGGTTGTCTTCACAGTACGAGAGCATTCACGGAAAAATGAAAAGCGGTCGCGTGCTGAAGGAGCATTTGGACCGAGCTTTGGCTTTACGCGACGACGATCCCATCTGTTTCTATCTGCTCGGCCGTTGGTGTTTAGAGgtgAGCTCTCTGGGTTGGCTGGAGAGGAAAACCGCTGCTACGCTTTATGCTACTCCTCCCACATCCTCAGTGAATGAAGCTCTGGAGAACTTCCTCAAGGCAGAAGAATTAAATCCAGGCTTCTCCAAAATAGTTCGCCTTTATATCGCCAAGTGTCATAAGGAGCTAGGAAATGTATCAGAGGCCAGGAATTGGGTCCAGTTAGCTCTGAGCACACCAGTAGGAACCAATGAGgATTCAGACAGCGCAGCTTTACAGGAAGAGCTGAAGCCTTTGGCTGACAATACAACGGACCAACCAATAAGCAGTATGAATAATTAGGGTGGAGTCTGAAAATTGTCTAACgtaaactttttacattttatgtggTACGTGCTCTATTTATTTAACGTTATTTGCAGTTGTGCattgttaaaacatatttttagtaatctataaaatattatattactataaatattCTATTAAAATTGTTTGCTATTGTTCACATATCTTcacaaaacactgcatttcattCCCTACGAAAGATGAAGGCATCGTATCGTTCCTAATTCTTAATATGCTGTGAAATTAagcatttaattgtttaaacgAAATGACTGATGTATGATTTCGTTTTGACGTGATGTGAATTCCTGAAAGATGACAATAAAATAGCACATTTATCTCA
>XM_043218884.1
GGCGCGCTAatgctctccctctctcacgcAAACGCTCCTGACGCCTCCTGTCAAACAGCGTGAGTTTGATGGGATTGAGATATTtagtctttaaataaataatcgaGAATTACAGGATGAGCCGGAGCTGTGTTTACATCTCTGAATCATGAGGATAACGAGGGATAACGCGACGGCTAGTTAGATCCGCGTGAGAGAAACGCAGATGCGCCGATAGCAGAGGATTCAGGGGGATTTTACGCGCGGTCGGCGATGAGCTGGCTCGGCAGGAACGCCGCGATCGGTCTCGGCGTCGGTGTGACGATCAGCACCGGCCTGATCGCATTATTGATCATTAAGGAAGCTCTCAGGAGGAGAAACCGCCGCGGCCGCCTGGTGCTTCACAACGCGAGCTCCGCGCTGCCGAACGACATCGACTCCGCCGTGAGCGGGTTGTCTCCTGAGCAGCAGGTGGAGCTGAGGAAGACTCTGGATGAGGTGATGAAGAGCGTGTCCGGTCTGAGGAACGAGATCGCGGAGCTTCGAGAGGGTCTGAGGGACATCAGCGCCACCATCGCTGAAGACGTCAAGAAGACGGTGGAGGAAAGTCAGAGATCGCGTCGGAGGCGTACGCTGATGCCGAGGGAGCGCTCCGAGTCCATGAGCTCCAGCTCCATTTACTTCACCGCCAGCGCCGGGGTCGCCAGCCTCTGTGACGACAGCGAGGTCGGATACTCCACGGCTTACTCCAACGCAGAGTCCGATTACACAGACCGAGAGACGGATCGCGATGGTGAGGACGATGGGAGGGActcggaggaggaggaggaggatgaagatgaagatgaagatgagagCTGCGCTACTGTGCTCACGCTGAGACACGACGACTCGCAGGCTGAGGAGGAGGACGATGAAGAGGCCGGGCTCATGGTGGACTGTTTAGCAGATATTCCTAGCCCTGAACTCGCCCTCCTGCTCGCCCAGTGTGATCTGCTGCATGCAGGGGATTCTGGGAAAAAAGCAGAGGGCTTCCAGCTCTTGATGGAGAACAGACCCCTGTATGCTGATAACGTGGAGTTCATGTGGCGACTGGCTCGTGCCTACAGCGACATGTGTGAGACAGCGGACaacagagaagaaaagagaaactaCGCCGAGCAAGGCCATTATGAGGCAGAGGCGGCGCTGACGAGGAACGAACTGAGCGCTGATTGTCACAAGTGGTTTGCCATCCTGGCGCGGTTGTCTTCACAGTACGAGAGCATTCACGGAAAAATGAAAAGCGGTCGCGTGCTGAAGGAGCATTTGGACCGAGCTTTGGCTTTACGCGACGACGATCCCATCTGTTTCTATCTGCTCGGCCGTTGGTGTTTAGAGgtgAGCTCTCTGGGTTGGCTGGAGAGGAAAACCGCTGCTACGCTTTATGCTACTCCTCCCACATCCTCAGTGAATGAAGCTCTGGAGAACTTCCTCAAGGCAGAAGAATTAAATCCAGGCTTCTCCAAAATAGTTCGCCTTTATATCGCCAAGTGTCATAAGGAGCTAGGAAATGTATCAGAGGCCAGGAATTGGGTCCAGTTAGCTCTGAGCACACCAGTAGGAACCAATGAGgATTCAGACAGCGCAGCTTTACAGGAAGAGCTGAAGCCTTTGGCTGACAATACAACGGACCAACCAATAAGCAGTATGAATAATTAGGGTGGAGTCTGAAAATTGTCTAACgtaaactttttacattttatgtggTACGTGCTCTATTTATTTAACGTTATTTGCAGTTGTGCattgttaaaacatatttttagtaatctataaaatattatattactataaatattCTATTAAAATTGTTTGCTATTGTTCACATATCTTcacaaaacactgcatttcattCCCTACGAAAGATGAAGGCATCGTATCGTTCCTAATTCTTAATATGCTGTGAAATTAagcatttaattgtttaaacgAAATGACTGATGTATGATTTCGTTTTGACGTGATGTGAATTCCTGAAAGATGACAATAAAATAGCACATTTATCTCA

Function

symbol description
rmdn3 Predicted to enable microtubule binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN3 (regulator of microtubule dynamics 3).

NR:

description
regulator of microtubule dynamics protein 3

GO: NA

KEGG:

id description
K23293 RMDN3, PTPIP51; regulator of microtubule dynamics protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218883.1 True 2034 mRNA 0.50 12 21787959 21794143
XM_043218884.1 False 2029 mRNA 0.50 12 21787961 21794143

Neighbor

gene id symbol gene type direction distance location
eif2b2 eif2b2,LOC107719358,LOC107685362,LOC107697194,LOC107742715 coding upstream 8714 21774884 ~ 21779245 (+)
tmed10 tmed10,LOC107697197,LOC107685358,LOC107593259,LOC107550417 coding upstream 13590 21771292 ~ 21774369 (+)
fosab LOC107697196,LOC107719360,LOC107685356,LOC107550415,LOC107742716 coding upstream 19357 21766414 ~ 21768602 (+)
esrrgb esrrgb,LOC107685376,LOC107697200,LOC107550385,LOC107719365,LOC107708321 coding upstream 107039 21668066 ~ 21680920 (+)
gpatch2 LOC107708325,LOC107593261,LOC107685352,LOC107550410 coding upstream 123025 21656663 ~ 21664934 (+)
bmf2 LOC107550420,LOC107593255,LOC107719427,LOC107685367 coding downstream 23060 21817203 ~ 21824119 (+)
taar10 LOC107697082,LOC107550377,LOC107719389 coding downstream 96008 21890151 ~ 21891194 (+)
taar10a taar10a,taar10b,taar10d,taar10c,LOC107719440,LOC107697108,LOC107550390,LOC107719439,LOC107697105,LOC107697107 coding downstream 102808 21896951 ~ 21897961 (+)
LOC122325159 taar10b,taar10c,taar10d,taar10a,LOC107719439,LOC107550391,LOC107697107,LOC107697105,LOC107550394 coding downstream 105629 21899772 ~ 21900828 (+)
LOC122325217 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding downstream 116258 21910401 ~ 21911411 (+)
LOC122325564 NA non-coding upstream 49212 21735966 ~ 21738747 (+)
G140747 NA non-coding upstream 52287 21732575 ~ 21735672 (+)
G140698 NA non-coding upstream 88701 21698421 ~ 21699258 (+)
G140721 NA non-coding upstream 150765 21636509 ~ 21637194 (+)
LOC122325460 NA non-coding upstream 234845 21551685 ~ 21553114 (+)
G140784 NA non-coding downstream 46080 21840223 ~ 21840465 (+)
G140786 NA non-coding downstream 50690 21844833 ~ 21845453 (+)
G140788 NA non-coding downstream 52671 21846814 ~ 21847021 (+)
G140792 NA non-coding downstream 55619 21849762 ~ 21850135 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding downstream 56719 21850862 ~ 21853121 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 585997 21168775 ~ 21201962 (+)
G140533 NA other upstream 685449 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 996256 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1113570 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 1195800 20554113 ~ 20592159 (+)
G140785 NA other downstream 50003 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 677618 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 712584 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 950269 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1048662 22842805 ~ 22860327 (+)

Expression


Co-expression Network