si:dkey-119m7.4 (si:dkey-119m7.4,LOC107704351,LOC107670234,LOC107565461,LOC107755002,LOC107709524)


Basic Information

Item Value
gene id si:dkey-119m7.4
gene name si:dkey-119m7.4,LOC107704351,LOC107670234,LOC107565461,LOC107755002,LOC107709524
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2538637 ~ 2550699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218891.1
CGCGCCTGTCCCTCCTAGCCATAACCTGGCCTCCATTTCATAGCATTGATAATATCATAATACTGACCTGACATCATCTAGAGCATTACTTACATGTGCACTTACATACCAACTTCTGTCCTAAGATTCGTGGGCCCAGTCATCATCACCTCAATAGATGCTGTGTAAGGTTTCATGAAGTGACATTCAGGGAAAGGCAGAATGAATTTTGACAAAGTTCTGGACCGGATTGGAGGGTTTGGACGCTTCCAGAAGACGCTTTATGTGTGGATCTGCCTGCCACAGATCTTCTTGGCCTTCCACATGTTGGTGTCTGTCTTCACTGGGGCTGTGCCCCCTCACCTGTGCAGATCCACCTGGCCACCAGGCGACGGTGGTGGCCCTATGCTGGAATTTAACTTCAGCAATGCTCCTGTGGAGTCCTGCGCATTTGTTCAGGATGTCCCTATGTCCCAGCATAATCGCAGTCTACCAATTACTGAGCACTCGTCTACTTCAAATGGCTGTACAGGAGGATGGGAATTCAGCAAGGAAGTCTTTCTCAACACTGTTGTCAGTGAGTGGGACCTTGTGTGTGAAAATGCTACATTGAATAACATTGGATCTTCTATCTATATGTTTGGGCTGCTAGTTGGAGCTGTTTTGTTTGGCGCCCTCTCTGATAAGTATGGCCGCAGAATGATCATATTGATTGGTTTAGCAGTACAGTCCATCTTTGGAGTGGGGGTCGCTTTCGCTCCAAATTTCTACATATACGTCCTGCTTCGCTTTGTGGTGGGAATGACGATTTCTGCAGTAATCATGAATGCATTTGTGTTGGGCACTGAGTGGACGGGCCCTAAAAAACGCATGTTGGCCGGTGTCATCACAGACTACTTCTTTGGTTTTGGCTACATTCTGCTTGCAGGTGTGGCCTACCTCATACGAGACTGGCGAAAGCTGCAGTTGGCCATTTCTGCCCCaggcttcctcttcctgttctACATCTGggTGCTTCCTAAGTCTGCCCGTTGGTTAATGGCCAATAACAAGCATGAAGAGGCACTGGATCTGATTCGTAAGGCAGCACTTATTAATGGCAAACCTCTGGTAGATGATGACATTGAGCTCTGTCAGAGCCCTAAACACTTAGAGAAACTGCAAGACCTGAGGAAGTACACTGTCATCGATTTACTCCGAACACCCAAAATGAGGAAACAGTCCCTCGTTCTCTTCTAcctgtgGTTTGTCAATGTCCTGGTGTACTATGGGTTGTCTCTGAATATTTCAGACTTTGGGATGAATATCTACCTGACACAGATGATTTTTGGCTTAGTGGAGATGCCAGCGCGAACCATTACTCTCTTCACCCTAAACCGCTCACGCAGGATATCCCAGTTAGCATTCTTGGCAGTAGGCGGCCTGGCCTGCCTTCTTACCATATTCATTCCAGATGATCTATCTATTGTTCGCACTGTACTTGCCATGGTGGGCAAGTTTGGCATCACCGCCTCGTTGTCCATTGTATACATTTACTCAGCAGAGGTCTTCCCAACAGTCATCAgacaAAACGGCATAGGTATGGGTTCGATGTGTGCACGGGCTGGCGGAGTGATTGCACCCATCATCTACCTCTTGAGAAACATCAGCCGTCACGCCCCAATGGTGGTATTCGGTCTGTGCCCGCTCATAGGAGCTGCCCTCACTATGTTTCTACCTGAGACAGCCCATAAGCCCCTTCCAGACACTATAGAGGATGTGGAGTGCACAGGTGTGAGCACTACGGATGAGAAGTCACAACACGCTTTGTATGAAGAATGTCCCAAACAGAACCCAGAGGGCATTCTCTGAACTCTAGTCTACAGTAGACTGTCTCCAAACAACCATCTCAGAACGAGAGAATTGTCCTGTGTCATTTCCAACAATTCTCTCCAGGGGCGCTTGAAGATAAAGtgcttctcaaaaaaaaaaaaagatataatgcTAAAGATACATCTTTGTACCTTATTTGACCTTTAATTGTACATACCCTagtaaaaaagtacaatatatttaaaatacatttatttcttactgagtataattaaaatatgtaaacactttaataaaaaactttatttggagtactACTTGgcatacatttatgtatattaatattttactaggGTATTACTGCCTTAAAGGTAAATATCATTAATTTAACAGTGCACATTAGTTTGAAAGAGTACTACTCTTTTTTTCTGAGTGTGGTATGAAATGCGAAAAAATGCAGTGCTAGCATGTACAATAATATACTTCGATACAAGGGCATTTTCatttgagttgttgtttttttttttaagataaaattgAAGTCTTGAATTTTAAGACATCAGATAATCTGTTTTATTCTGCTTGCCAGGTTTGTGAATTTTTGGATATGTGCAATTCTTCACATCGTCTGCTCTATGCACTAAAATACTTCtcttatatttacttatttgtggttatagctttCAAGAGTATGATCATTTATTACACACAATGAACACAATTACAACggattatatttctcatagttacaatgcattataaatctcatgttttgctattttacttttgtttctttACTTAAAGTACACTCTTAagtaataagaataatattttttgctcAAACTGCCTTACGATCAGAAATGGGATTAGATGAATGTataatatgacacatttgctttgaacttttttttaaaaaatatagtatcAGTTTGATTATTTGGATGGTACCCTTTAGACAGCTGTTGATAAATGACTCTGCAACTATGTCAACTAGCAAGTGAATGTCAACTAGCCCTCACTAGAGTGTTAGTAGTGTGTCgctaaatatatgctaacacTTTATATTGATGGTTCCTCAAGAAACATACTGAGTATAGGATACTTTGCAAGTGAACATTCTACCTATCCTAAGTCTACTAATGCTCTAATACTACTAGTACTAATActaatgcatgtttttcagttgaaagtacaggaaacactcaaataacaCACGGCACCTCACCACTCACAAGATGTTGTAAGGTAGCCTACTGTGCAGATCTTTAAATACACAATGTCAAGATATGATATAGTCCATTATAAATTAAGTAGATTTAATAtggtgttcattgtgtgttatatataatcatactcttaaaagttAGCACAAATacgtaaataatataatagataCCATTTTGGCATCAGTAAATCTCCATCGGGTCACCTGGTATTTATGACTGACTCAGAAATTGACCTTCTTTGCATGAATGCCAAGCTCAATAGAGCCTGATTATATGGCTATAAATACTCGACTAACTACTGTTTCTAATcatcttaaaacattttacaattaccAAAACTCTCAGTCAgccttaaaagtaaa

Function

symbol description
si:dkey-119m7.4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
solute carrier family 22 member 6-A-like isoform X1

GO: NA

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218891.1 True 3379 mRNA 0.40 10 2538637 2550699

Neighbor

gene id symbol gene type direction distance location
fynb fyn,fynb,LOC107704353,LOC107755004,LOC103458010 coding downstream 5510 2480372 ~ 2533127 (-)
ndufaf4 LOC107755001,LOC107565458 coding downstream 59823 2474871 ~ 2478814 (-)
gpr63 LOC107755000,LOC107670245,LOC107565457,LOC107750403,LOC107676696 coding downstream 64644 2466383 ~ 2473993 (-)
col10a1b col10a1,col10a1b,LOC107710900,LOC107565440,LOC107704357,LOC107548284,LOC108415286 coding downstream 149973 2383181 ~ 2388664 (-)
frk frk,LOC107565439,LOC107548283,LOC107670235,LOC107656465 coding downstream 159784 2367664 ~ 2378853 (-)
tube1 tube1,LOC107670257,LOC107703869 coding upstream 33368 2584067 ~ 2594796 (-)
lama4 lama4 coding upstream 45713 2596412 ~ 2632143 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding upstream 113079 2663778 ~ 2670855 (-)
LOC122325188 LOC107714796,LOC107565462,LOC107670243,LOC107550532,LOC107676708,LOC107715681,LOC105017614,LOC106607890 coding upstream 210447 2761146 ~ 2778825 (-)
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding upstream 236440 2787139 ~ 2848625 (-)
G135546 NA non-coding downstream 179946 2358478 ~ 2358691 (-)
G135542 NA non-coding downstream 438396 2099996 ~ 2100241 (-)
G135480 NA non-coding downstream 660515 1877914 ~ 1878122 (-)
G135435 NA non-coding downstream 785690 1752733 ~ 1752947 (-)
G135434 NA non-coding downstream 786181 1752156 ~ 1752456 (-)
G135627 NA non-coding upstream 26433 2577132 ~ 2577488 (-)
G135629 NA non-coding upstream 28570 2579269 ~ 2579702 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 93482 2644181 ~ 2647081 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding upstream 181904 2732603 ~ 2737889 (-)
G135691 NA non-coding upstream 208398 2759097 ~ 2760884 (-)
G135548 NA other downstream 173813 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 525110 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 662345 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 878101 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 966938 1546487 ~ 1571699 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 189853 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1087590 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 1418064 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 2013657 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 2460682 5011381 ~ 5012580 (-)

Expression


Co-expression Network