spata18 (LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473)


Basic Information

Item Value
gene id spata18
gene name LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11669140 ~ 11676651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218909.1
CAGGGACAACGCAATActtgaaatcatttatttaggACTGCAACCTTTTCACGTGGTATGAGGTTAAATGGTGGAAATTCAATTAAAGCATTACTCCTGTTCTTCGAGAGAATGTAAATAAAGATCTTCCCGCACTTGACATCTGACACCCACTTAACAGTGTGAGATTTCATCACTGAGAACTGAGCTTCACCTTCAGACAGAGACACTGAGTAACATAATAAGAGGCcgtgttaaaaaaacacaacaacacaaaCAGCTCGTATGGTTTAGGCTGTGCTTATACGGCTATATTTCCTCAAACTGAGAAGTCTAGCAAACCGTTGCTACAACTAAAAGCGCGTCCATGGTTTCATTGAAAGTCGAGGGTGTGAATGGTGGGCTTTTACTAGCAGTATAAATACAAAGAGCGCAGCCGCTGCTGGATTAAGTGCGCCGGGACGTCCTGAAGCAGGATTACAGCAGCAGATCTGCAGCGATGGCTGACACTTTACGAAGACTGGTCAACTCATCTCCGTACGGCGTTTTGCAGGACAAACTGGAGGCTTGGTACAAAGACTATCACGTGTTCTCTTGTGACCAGAACCTGAATAGGTGCTGTGAGCTAGTGGAGCTTACCTCTAAAATCCAGGGGCAACTGTTCACCATTCTCAACCTTACGGCACAAGAAGGAGGACATTATTCAGGCGTTGACACGCTGAAATCTCGCCTTTTACCATGGCTTGGCTCTTGCTTCACCATTGCGGCTTCGTCTGTCTCCGCAGATACCAGCCTTAGCCTCATTCAGGAATCAATGGAGAAAGATCGGAAGATTCGTGAGCTATCATCAGTTCATGACAGCGACATGCAGAAAATTGAAGACAAGCTGTGTTCTACACGTATGGAGTTGGACACAGTTAAACAGGAGCTTGCTGAAACCCAGATCGAACTGGACTCCACAAAGAATAAATCTGCAACTACACTCCTGGCCACAGAAGATGAAATATTACATCTAAAGGCAGAGTTGCGAGTTGCTCAGGATCAGGTTGATCTGTATAAGAGAAAGCTGGATGTACTTGATGACTATGAGAGGCAGGTCAGAATCCTACGAGACGAGATCTCGTTTCTCACCGCTGAAAAAACTGTTCTACAGGAGAGACTGGTCAGAAGCCGTTCCCCTAGTCCTCTTCCCCGTCGGAGTCGCTCCATGAGCCCGGTGAGGGGTGAGTCTCCTACACGTGCACAGCTTACCAGTTCCTCTAGACACGCACGACTGGTGTCCCGTTTCTCAGACCTGTACGCCACTGAGAGACTGGAGTCCCAGAGTCTCCTGCGCAGGTATATCGACGACCTGGAAACAGTCCAGAGGATCCTTTTTATCGGTGTTGTGGAATCATTTCAGGCTGCTAAAATGGCCTATCGTCAGTTTAAAGCACGCGTGAGGAAGACACTTTCCTCCACTCACATTGGCCCTGAGAGTCTGGAGGATGCAGTGGTGGATTACATTGTGAGAAACCTGGATCTGTATGATGTGCAGACGAGCGTTAATGATGTGATCAACGCGATGAATGTAAACCCACGCATCTCTTTCCCTCCGGAGGTGGACTTTGTTCTGATCAGTAGCTTCATTAGGGAAGCATGTCGAGTAGCTTTTGCTATGCAGACTCTGGACCCAGCGCTGGACCTGGCCTTCAGCTCAGATGGAGAACTCTACAGTGACGTTAAGTACAGGCGCAGCTTTGACTCGGAGTTCACCGCTCCGCTTGTGGCGTATCACGTGTGGCCCGCTCTGTTGGAGGGAGACACCGTCATACTGAAGGGAGAGGCGGTCACTAAGAGAGGAGCTCTGTGGAGAAGCACGAGTCGTAGCTCCAGTCCTGTCCGCTCTCGCTCAGGAAGCCCCAGCCGCACATTTatcgAAGTCGTAGTCGAAGCCCTTCTCCCGGACGGCTCTCAAGTAATCGACTTTAAAGTTTGATACCTGACCATACTTCACGCTACAGAAccaaacagaagaagaagaaaaaaaaaatccagtttgaACATAATTTATCTATGTGTGGGATGTATTAGAATCTAAAGTGGAAAGTAATTACCTTCATTACTGACTCGGTACTTATGAAGAGTGGagtcatttgtcatttttaaacagaaagcaCTATTTACAAGCTCAAAACTAACATTTTCTGAGTGGACTGCACTTGATTTGATTGACCAGTTAAACCTTAATTATATTCCACCAGCACCGTGAATATGCATTATACTGATCTGTGACTCAAAGTGAGGGAGTTTTACTCAGTGAGTCTAACAAAACCATTGCACATCACACCACTACTTTTTAAATCCAAATGTTAACTTTCGAAGGGTGGTGTATGTACTTGTTAAGGTGCTCTGTTTGTCTGTGATAACTGGACAAGTCATTTAAGGTGctattctttctatttttttagtATGCAGTGTTTTCATATATATCTACGTGGTTTTTGTTTATCTATAAGAAATAGAAAATCTGTTGTCTTCTAAGTCACACCTGCACACCAGCACTTTTGTTGTTCAGATTACCTGGAGAATATTAATTGGCTCTTTTGTAATGAgatctgtatttttatcatcacAAGTGCTGTACGCAAAGTTTTTCTACTGAACTATCATTCATTCGTTTCTTCTATGTATACATCATTTGTAGACACTACAAGAATCTTGACAGAATGCATTGAATGATTTCCCCTTTAAAAGacacttttaatgtaaaatgtatttttgtcctAATGTTGGTGCTATTGTTTTAACTTTGGTATAAAAGAATCAGACTGCAGTGTTTTACAGTATACAATATAAGTTTAAGGTGCTCGGTCTGTTCCctaattttgtcatgtttacttAAATCACTTATTAAATTTGTCCAAACATAAAGATATGCGAATGTGAATCATTAGTGACAGACCTAAAACTGGTTtggttttaaactgttaaacatATCATAgtcataaaataattgtttatctgagtgcacataata
>XM_043218910.1
CAGCAGGGACAACGCAATActtgaaatcatttatttaggACTGCAACCTTTTCACGTGGTATGAGGTTAAATGGTGGAAATTCAATTAAAGCATTACTCCTGTTCTTCGAGAGAATGTAAATAAAGATCTTCCCGCACTTGACATCTGACACCCACTTAACAGTGTGAGATTTCATCACTGAGAACTGAGCTTCACCTTCAGACAGAGACACTGAGTAACATAATAAGAGGCcgtgttaaaaaaacacaacaacacaaaCAGCTCGTATGGTTTAGGCTGTGCTTATACGGCTATATTTCCTCAAACTGAGAAGTCTAGCAAACCGTTGCTACAACTAAAAGCGCGTCCATGGTTTCATTGAAAGTCGAGGGTGTGAATGGTGGGCTTTTACTAGCAGTATAAATACAAAGAGCGCAGCCGCTGCTGGATTAAGTGCGCCGGGACGTCCTGAAGCAGGATTACAGCAGCAGATCTGCAGCGATGGCTGACACTTTACGAAGACTGGTCAACTCATCTCCGTACGGCGTTTTGCAGGACAAACTGGAGGCTTGGTACAAAGACTATCACGTGTTCTCTTGTGACCAGAACCTGAATAGGTGCTGTGAGCTAGTGGAGCTTACCTCTAAAATCCAGGGGCAACTGTTCACCATTCTCAACCTTACGGCACAAGAAGGAGGACATTATTCAGGCGTTGACACGCTGAAATCTCGCCTTTTACCATGGCTTGGCTCTTGCTTCACCATTGCGGCTTCGTCTGTCTCCGCAGATACCAGCCTTAGCCTCATTCAGGAATCAATGGAGAAAGATCGGAAGATTCGTGAGCTATCATCAGTTCATGACAGCGACATGCAGAAAATTGAAGACAAGCTGTGTTCTACACGTATGGAGTTGGACACAGTTAAACAGGAGCTTGCTGAAACCCAGATCGAACTGGACTCCACAAAGAATAAATCTGCAACTACACTCCTGGCCACAGAAGATGAAATATTACATCTAAAGGCAGAGTTGCGAGTTGCTCAGGATCAGGTTGATCTGTATAAGAGAAAGCTGGATGTACTTGATGACTATGAGAGGCAGGTCAGAATCCTACGAGACGAGATCTCGTTTCTCACCGCTGAAAAAACTGTTCTACAGGAGAGACTGGTCAGAAGCCGTTCCCCTAGTCCTCTTCCCCGTCGGAGTCGCTCCATGAGCCCGGTGAGGGGTGAGTCTCCTACACGTGCACAGCTTACCAGTTCCTCTAGACACGCACGACTGGTGTCCCGTTTCTCAGACCTGTACGCCACTGAGAGACTGGAGTCCCAGAGTCTCCTGCGCAGGTATATCGACGACCTGGAAACAGTCCAGAGGATCCTTTTTATCGGTGTTGTGGAATCATTTCAGGCTGCTAAAATGGCCTATCGTCAGTTTAAAGCACGCGTGAGGAAGACACTTTCCTCCACTCACATTGGCCCTGAGAGTCTGGAGGATGCAGTGGTGGATTACATTGTGAGAAACCTGGATCTGTATGATGTGCAGACGAGCGTTAATGATGTGATCAACGCGATGAATGTAAACCCACGCATCTCTTTCCCTCCGGAGGTGGACTTTGTTCTGATCAGTAGCTTCATTAGGGAAGCATGTCGAGTAGCTTTTGCTATGCAGACTCTGGACCCAGCGCTGGACCTGGCCTTCAGCTCAGATGGAGAACTCTACAGTGACGTTAAGTACAGGCGCAGCTTTGACTCGGAGTTCACCGCTCCGCTTGTGGCGTATCACGTGTGGCCCGCTCTGTTGGAGGGAGACACCGTCATACTGAAGGGAGAGGCGGTCACTAAGAGAGGAGCTCTGTGGAGAAGCACGAGTCGTAGCTCCAGTCCTGTCCGCTCTCGCTCAGGAAGCCCCAGCCGCACATTTGTGAatcgAAGTCGTAGTCGAAGCCCTTCTCCCGGACGGCTCTCAAGTAATCGACTTTAA

Function

NR:

description
mitochondria-eating protein

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218909.1 True 2998 mRNA 0.43 12 11669140 11676648
XM_043218910.1 False 1957 mRNA 0.49 12 11670188 11676651

Neighbor

gene id symbol gene type direction distance location
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding downstream 61387 11604630 ~ 11607753 (-)
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding downstream 162813 11484137 ~ 11506327 (-)
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding downstream 309101 11339863 ~ 11360039 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding downstream 349221 11301144 ~ 11319919 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 601734 11061914 ~ 11067406 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 16131 11692782 ~ 11704023 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding upstream 36291 11712942 ~ 11716297 (-)
zar1 zar1,LOC107755254,LOC107683947,LOC107718383,LOC107597447,LOC107601952 coding upstream 118747 11795398 ~ 11796899 (-)
slc10a4 slc10a4,LOC107601950,LOC107718427,LOC107683944,LOC107597446,LOC107665333 coding upstream 121369 11798020 ~ 11801524 (-)
slain2 slain2,LOC107665374,LOC107597449,LOC107683941,LOC107601944 coding upstream 128023 11804674 ~ 11822835 (-)
LOC122324332 NA non-coding downstream 38046 11623593 ~ 11631094 (-)
G137748 NA non-coding downstream 38125 11628624 ~ 11631015 (-)
LOC122325627 NA non-coding downstream 38779 11630241 ~ 11630361 (-)
LOC122325626 NA non-coding downstream 39299 11629720 ~ 11629841 (-)
LOC122325628 NA non-coding downstream 39891 11629128 ~ 11629249 (-)
G137779 LOC107718384,LOC107665346 non-coding upstream 40587 11717238 ~ 11751172 (-)
G137812 NA non-coding upstream 94618 11771269 ~ 11771660 (-)
G137784 LOC107683942 non-coding upstream 115899 11792550 ~ 11797951 (-)
G137821 NA non-coding upstream 159455 11836106 ~ 11836716 (-)
G137822 LOC107683982,LOC107755258,LOC107597468,LOC107601923,LOC107718414,LOC107665352 non-coding upstream 161819 11838470 ~ 11839366 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 300650 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 486957 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 532528 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 945071 10721921 ~ 10724069 (-)
G137451 NA other downstream 1098403 10567297 ~ 10570737 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 5754 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 542112 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 546159 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 565150 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1584268 13260919 ~ 13264284 (-)

Expression


Co-expression Network