LOC122324484 (LOC107602180,LOC107676237,LOC107727604)


Basic Information

Item Value
gene id LOC122324484
gene name LOC107602180,LOC107676237,LOC107727604
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20069406 ~ 20071277 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218919.1
CATACAGAACTACTAGAACAAGCTGTACCTGACATCCAAACCTACTGAAACCTGCTCAAGGAGAAGAACCACCAAAAAAGCTAGTTTAAGTGAAAACACAGGAGAAATAATTACTTTCTGTGCCTACTGGACCAGAGACATGCACAACCAGGTTATTCAGAGCCTTGAGAAGGTACTGCACAACCTCTGGTTCATAAAAGAACTTTCTGAGCTCATTCTTGGAGCAGCCTTACTTTTTGAAGCCTTTGTTCGACTCTTTATTCCACACTGCAAGAAAAATGTTGAAGGAGAGATAGCCTTGGTGACTGGAGCTGCGAATGGCATTGGAAAGCTGATTGCGAAAGAACTTGGCCACCATGGAGCAACATTAGTCTTATGGGATATCAACTCAGATGCACTGGACAAAACAGCCAGAGAATTAAAGCAAGTATTGGATGTCCGTGTGTATGCCTACACCTGTGACTGcagcaaaagaaatgaaatttaCAAAGTTGCTGAACtggTTAAAAGGGAGGTTGGAGATGTGTCAATTTTGGTAAACAATGCAGGCATGGTAACAGGCAAACATACTTTCGTAGAAGCCCCTGACAGTCTAGTGGATAGAACACTAAGGGTCAATGTTGCAGGTCATTTCTGGACTTACAAGGCATTTCTCCCAGCTATGTTGCAACAAAATCATGGGCATCTGGTCTGCGTGGCATGCCATGGAGGGTTGTTTGCAATGAATGGCCTTGCAGATTATTGTGCAAGCAAGTCTGCAGCAGTGAGCTTTGCAGAATCTGTTGCATTGGAGCTGCTTGTCCTTAAAAAGGAAGGAATCAAAACAACAATAGTGTGTCCCTatctaataaacacaaaaatgtttaggGGATGTCAAACAAAGAGACCATCCTTTCTTCCAATCTTGGATCAGAGACATGTAGCAAAACAAATTGTGGATGCAATACTACAGGAAAAGACGTATTTGTTGTTACCCTTAAGTCTACATTTCTTGATGGCACTAAAGAGTCTCATGCCTGCCAAACTGGGCATCATCTTTGTGAACTTCATTGGTGGGATGGATCTGATGGATCACTTCAGGGGGGTTCCTGTACCCATCATCAGCTACAAAAGCCTCAGCGCCAACGAAATGACAGTGTCAGTGATCCACAGACCAACCTTATCTATTACGACTAAAAATCACCAGTGAGCTTAAATGCATGATCAGTCTATACTCAGTCTATAAAATTATTGCAGAGctgtgaataaatacatttttccttaA

Function

NR:

description
PREDICTED: epidermal retinol dehydrogenase 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218919.1 True 1264 mRNA 0.42 8 20069406 20071277

Neighbor

gene id symbol gene type direction distance location
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 220361 19827100 ~ 19849045 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 418277 19649188 ~ 19651129 (-)
cad cad coding downstream 422318 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 441379 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 515079 19542377 ~ 19554327 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 102271 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 159698 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 186976 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 222017 20293294 ~ 20296159 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 230129 20301406 ~ 20304874 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 159759 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 267738 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 329043 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 620694 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 728346 19335079 ~ 19341060 (-)
G140304 NA non-coding upstream 77003 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 195391 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 215203 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 555378 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 665311 20736588 ~ 20791701 (-)
G140277 cad,LOC107602171 other downstream 6429 20061602 ~ 20062977 (-)
G140227 cad other downstream 9803 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 454204 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 765438 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 806454 19261466 ~ 19262952 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 339352 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 563019 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 896911 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 1018127 21089404 ~ 21091008 (-)
G140616 NA other upstream 1127433 21198710 ~ 21278741 (-)

Expression


Co-expression Network