LOC122324514 (rps7,LOC107668222,LOC107726469,LOC107601753)


Basic Information

Item Value
gene id LOC122324514
gene name rps7,LOC107668222,LOC107726469,LOC107601753
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15919584 ~ 15922857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219007.1
ATAATGCAACACACCAACTCTCTTTTACCGGCCTCTCGCGAGAATACGGCCTCTTCCCAGGCCGTCGTTGAAAGAGacaCAGGCCATGTTCAGTACCAGCGCGAAAATAGTGAAGCAGAATGGCGAAAAGCCAGATGAGTTTGAGTCTGGCATTTCCCAGGCTCTTCTTGAGCTGGAGATGAACTCTGATTTGAAGGCTCAGTTGAGGGAGCTTCACATCACTGCTGCTAAGGAAATCGAGGTTGGTGGTAGCAGGAAAGCCATCATCATCTTTGTGCCAGTGCCCCAGCTGAAGTCCTTCCAGAAGATCCAGGTGAGGCTTGTACGTGAGCTGGAGAAGAAATTCAGCGGCAAGCATGTGGTGTTCATCGCACAGAGAAGAATCCTGCCTAAGCCCACTAGGAAAAGCGCCAAAAACAAGCAGAAGCGCCCCAGGAGCCGAACTCTGACTAACGTGCATGATGCTATCCTCGAAGACCTTGTCTTCCCCAGCGAGATTGTTGGCAAAAGGATTCGCGTGAAACTGGACAGCAGCAGGCTCATCAAGGTCCACCTCGACAAGGCACAGCAAAACAATGTTGAACACAaaGTTGAGACCTTCTCTGGTGTCTACAAGAAGCTCACAGGAAAAGATGTGATATTTGAATTCCCGGAGTTCCAACTGTAAAGTGCAGATgacaaaataaatttgtttactGTCA

Function

symbol description
rps7 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development; hemopoiesis; and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7).

NR:

description
PREDICTED: 40S ribosomal protein S7-like isoform X2

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0009790 embryo development biological_process
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02993 RP-S7e, RPS7; small subunit ribosomal protein S7e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219007.1 True 701 mRNA 0.49 8 15919584 15922857

Neighbor

gene id symbol gene type direction distance location
LOC122325442 rps7,LOC107668222,LOC107726469,LOC107601753 coding downstream 74107 15842203 ~ 15845477 (-)
sox11b LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258 coding downstream 397801 15519210 ~ 15521783 (-)
rnf144ab rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108 coding downstream 467573 15438737 ~ 15452011 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding downstream 500815 15416967 ~ 15418769 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding downstream 549554 15365958 ~ 15370030 (-)
LOC122324513 ust,LOC107693205,LOC107732646,LOC107726493,LOC107696116,LOC107601503 coding upstream 70985 15993842 ~ 16001170 (-)
LOC122324509 ephx1,LOC107553477,LOC107732537,LOC107601524 coding upstream 190235 16113092 ~ 16118444 (-)
hebp2 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 376417 16299274 ~ 16302044 (-)
kif25 kif25,LOC107726448,LOC107549120,LOC107696106,LOC107732626 coding upstream 379334 16302191 ~ 16310567 (-)
acat2 acat2,LOC107696107,LOC107732634,LOC107549121,LOC107693222,LOC107726488,LOC107601581 coding upstream 388029 16310886 ~ 16314723 (-)
LOC122325612 NA non-coding downstream 195354 15724010 ~ 15724230 (-)
LOC122325616 NA non-coding downstream 196301 15723063 ~ 15723283 (-)
LOC122325623 NA non-coding downstream 196815 15722550 ~ 15722769 (-)
LOC122325621 NA non-coding downstream 197319 15722046 ~ 15722265 (-)
G138862 NA non-coding downstream 208531 15684176 ~ 15711053 (-)
G138956 NA non-coding upstream 284213 16207070 ~ 16208001 (-)
G138960 NA non-coding upstream 291487 16214344 ~ 16216716 (-)
G138983 NA non-coding upstream 400549 16323406 ~ 16325753 (-)
G139029 apobb.1,LOC107693214 non-coding upstream 527669 16450526 ~ 16451893 (-)
G139032 NA non-coding upstream 532027 16454884 ~ 16455403 (-)
LOC122325613 NA other downstream 75010 15844354 ~ 15844574 (-)
LOC122325622 NA other downstream 75955 15843409 ~ 15843629 (-)
LOC122325617 NA other downstream 76466 15842898 ~ 15843118 (-)
LOC122325611 NA other downstream 76966 15842398 ~ 15842618 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 904315 14993099 ~ 15015269 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 67292 15990149 ~ 15993645 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other upstream 94461 16017318 ~ 16104727 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other upstream 424344 16347201 ~ 16366799 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other upstream 532611 16455468 ~ 16462216 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 1423949 17346806 ~ 17428123 (-)

Expression


Co-expression Network