slc10a4 (slc10a4,LOC107601950,LOC107718427,LOC107683944,LOC107597446,LOC107665333)


Basic Information

Item Value
gene id slc10a4
gene name slc10a4,LOC107601950,LOC107718427,LOC107683944,LOC107597446,LOC107665333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11798020 ~ 11801524 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219026.1
ACGCTTTCAATCACGCGGACAGCTCTATTTCCTTTTTCCCGAAACGCGTCCTGGTGATTAGTTTCAGAGTTAATTGGTTCGGGTGGCGCCTGGTGACGCGCGCTCGGAGCCGAACCCCTCCCGGTGCGCGCCGCGCGCCACGCGCTGGACAGCCCGGTGTCCCTCAGTCACCGCTGACAGTCATACAATGATTCTGCGCCGCTAGGGGACAGTTCGGGGAGGGGACACCAGCGGAGACCGAAGGATCCTTTGGAGAGCTCCAGTCCCCCGGAGACGCGATGGAGAGCTCCAGCAGTGCGCTGAGCGCCGCGCTCAAGCAGCTCCTGAACTTCACAGAGGATCCCGTCAGCTCCTCGGAGAGTCCTTCGATGGCAGAGTTGCGCGCCACGGAAGAGCCGCTTTCACCCGTGCTCGGGGGCTTCAGGACCGACGCGGCTCCGGCGGGGCTCCTGGCGGGTCCGTTCTCGCCCTCTGAAGAGCCCGCTCACCTGATTGTGGCTTTTTGGGATTCACCCTTGAGTCACGGGATTAACGTGTTTGTTGGCTTTGTCCTGTGTTTTACCATGCTGGGGCTGGGCTGCACGGTGGAGCTCGGTCAGCTGGGCGAGCACATCCGCAAGCCCGTAGGAGTCCTGCTGGCGGTGGTGTGCCAGTTCGTCCTCATGCCCCTCATCGCCTTTCTCCTGGCTCTGGCCTTCTCCCTCAACGATGTGGCCGCTATGGCTGTGCTCCTGTGCGGCTGCTGCCCTGGAGGAAACCTCTCCAACATCATGTCACTGCTGGTCAACGGGGACATGAATCTCAGCATCATTATGACCATCTCGTCCACTGTTCTGGCGCTCGTGCTCATGCCGCTGTGTCTGTGGATGTACAGCCGAGCGTGGATCAACACACCCGTGGTGAACCTTCTGCCCTTCGGCGCGATCATTCTCACCCTCTGCAGCACCCTAATTCCCATCGGGGTCGGGGTCTGGCTTAGGTACCGCTATACTCGAGTGGCCGAAATCATCATCAAGATGTCTCTGTGGTCTCTCCTGGTCACTCTCCTGATGCTCTTCATCATGACTGGAACCATGCTGGGTCCGGAGCTGCTGGCCACTATCCCCGCCTCCGTCTACCTGGTGGCCGTGCTCATGCCAATGGCCGGCTACGCAGCAGGATACGGCCTGGCGACGCTCTTCGATCTCCCCCCCAACAGTCGGAGGACCGTGTCTTTAGAGACGGGCTGTCAGAACGTGCAGCTCTGCACGGCCATCCTGAAGCTGGCCTTCCCCCCGCAGCTGATGGGAGGCATGTACATGTTTCCTCTGCTCTACGCGCTCTTCCAGGCGGCGGAGGCTGGCGTCTTCATTCTGGCTTACCGCATGTACAGGAAAGAGGTGTTACACAAACAGGACCTCATGGAGGATGACGAGGACGATACAAACATATCCTACAAGAGAATGAAGGACGAAGATGTGCCGTTTGATTCTACGTACGGTGCGGTGACAGTGAGCGACCCCAACGTCATCGTAATGGAGTCACAGGATGCTGCTGGGAGCCCCACACCTGTATgaggaaacaaaaacaactgacTTGAGACTCGCTGTAGACACTGGATCTAAGTATTCACATTAGGATTCATTCATGCCATCACTCACTGCTGAATTTCTTACTAATCACTCACAGCATTATAACTAATATGTGCCAAAAATGATTGCAAATGACTGTGAAAATGGAAACTAGTTTTGTGACACACTAGCCAAATATTAGCACCGAAATTACCAAAAGAttagtgtaaatatttaaaacacaaatatatatatatatatatatatat

Function

symbol description
slc10a4 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

NR:

description
PREDICTED: sodium/bile acid cotransporter 4

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
K14344 SLC10A4; solute carrier family 10 (sodium/bile acid cotransporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219026.1 True 1819 mRNA 0.56 3 11798020 11801524

Neighbor

gene id symbol gene type direction distance location
zar1 zar1,LOC107755254,LOC107683947,LOC107718383,LOC107597447,LOC107601952 coding downstream 1121 11795398 ~ 11796899 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding downstream 81723 11712942 ~ 11716297 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 93997 11692782 ~ 11704023 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding downstream 121369 11669140 ~ 11676651 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding downstream 190267 11604630 ~ 11607753 (-)
slain2 slain2,LOC107665374,LOC107597449,LOC107683941,LOC107601944 coding upstream 3150 11804674 ~ 11822835 (-)
anapc4 anapc4,LOC107683992,LOC107665412 coding upstream 22737 11824261 ~ 11833692 (-)
cbr4 cbr4,LOC107597475,LOC107665353,LOC107755259 coding upstream 106036 11907560 ~ 11910735 (-)
LOC122325482 katna1,LOC107755263,LOC107683938,LOC107737259,LOC107597454,LOC107665349 coding upstream 258151 12059675 ~ 12064023 (-)
LOC122324547 NA coding upstream 376376 12177900 ~ 12181346 (-)
G137784 LOC107683942 non-coding downstream 69 11792550 ~ 11797951 (-)
G137812 NA non-coding downstream 26360 11771269 ~ 11771660 (-)
G137779 LOC107718384,LOC107665346 non-coding downstream 46848 11717238 ~ 11751172 (-)
LOC122325627 NA non-coding downstream 167659 11630241 ~ 11630361 (-)
LOC122325626 NA non-coding downstream 168179 11629720 ~ 11629841 (-)
G137821 NA non-coding upstream 34582 11836106 ~ 11836716 (-)
G137822 LOC107683982,LOC107755258,LOC107597468,LOC107601923,LOC107718414,LOC107665352 non-coding upstream 36946 11838470 ~ 11839366 (-)
G137831 LOC107755258,LOC107601947,LOC107597468,LOC107718414,LOC107665352 non-coding upstream 91743 11893267 ~ 11893889 (-)
G137916 sh3rf1,LOC107755262,LOC107683940,LOC107601942,LOC107739375,LOC107665389 non-coding upstream 143734 11945258 ~ 12013976 (-)
G137930 NA non-coding upstream 233954 12035478 ~ 12036122 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other downstream 114702 11682405 ~ 11683318 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 429530 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 615837 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 661408 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 1073951 10721921 ~ 10724069 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 417239 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 421286 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 440277 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1459395 13260919 ~ 13264284 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other upstream 1622434 13423958 ~ 13447388 (-)

Expression


Co-expression Network