LOC122324531 (foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483)


Basic Information

Item Value
gene id LOC122324531
gene name foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7608132 ~ 7620574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219038.1
ATACCCTCAAAAGAGAGCTATTACGTACTTTGGAGTACCTTGGAAATATGGGTACCGTGGTGTGAGAttacatataaatgtgtttctgtCTAGAGGGAAGAAAAGTGTTTGTCACAAGAGCTGGGAGAAGCCTACGCCAAGCTTATGAATGAAATCTCAGGGCAGGAGCCTTGGTCTAAATGGGTCCGGTTATGCCTCCCAGTAAGAAACCGGAAAGTTCCGGGGTCAGCGTCGCGAACGGCCTGAGCCAGTTCTATCAGGCGAGCTCCATCACGCGCGCCCTGCAGGAGGCCGAGGAGATGGACCTGGCTCTTCCCACCATCAAACTGGAAAAGGGCAGCATGGAGGACGAGGAGCTCACCAACCTCAACTGGCTCCACGAGAGCAAGAACCTGCTCAACAGCTTCGGGGACCCCGTGTTGAGGAGCGTCAGTCCCGTCCAGGACTTGGACGATGACACCCCTCCCTCCCCCGCCCACTCGGACCTCCCTTACGACGCCAAGCAAAACCCGAACTGCAAACCCCCTTATTCCTTCAGCTGCCTCATCTTCATGGCCATAGAAGATGCCCCCTCCAAGAGACTGCCAGTTAAAGACATATACAACTGGATCCTGGAACACTTCCCTTACTTTGCCAACGCCCCCACGGGGTGGAAGAACTCAGTCAGGCACAATCTGTCCCTCAATAAGTGTTTTAAGAAAGTGGACAAGGACAGGAGTCAGTCTTCAGAAAGTCTTAAAGAAGACTgaaggagagagtgagagtTGGATGGGGCGATGTGTTGGACTCGTCTCAGTGAATAGGTCCAACAACAGCCAAGCCTCCCCCTCCCCAAACACCCTCATTATGAATGACCTTTCATGCCCTTCCTAATGCACCGAGAGCCTCTGAAGGATTCAGCCAATATGAACGGAGGTCATCGTttctcagccaatcacagagcGAGCTTACCGCTTCTCTGCTCCTTCATGTGATTTAAGCCGCAGAGCCTCAGAAGAGATGACGACTCTGGGGCCGCAGCCATTAGCAGCTGATGACTGCTGGGATTTGGAGACCAAAGCAATGATGTCCTTTTGGACACCTTGATTTATCCATGTTTCAAAACGGTCGATGTCTGCATTTATATAGATCACCTTACCGACAGAGCATTTACACACTCACTTTAGGTAGTCCGATGTGCTGCTGAAGCGAATTGGTTTTCTTCAGAAACAGAAGtggttttttttcatctattttttctatttttacttttaccgTGAAAGAACAGTAATTAACTggattttctaaaataaatgtaattggcGCATATGCTAATATGTATgctatatatatgaaatgtctTAGGTCCCTCtttacactgttttttttctccttcgtTTGTTTGGTCTAATTggtctaaaaac

Function

symbol description
foxn3 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in female organism and male organism. Orthologous to human FOXN3 (forkhead box N3).

NR:

description
PREDICTED: forkhead box protein N3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219038.1 True 1403 mRNA 0.48 4 7608132 7620574

Neighbor

gene id symbol gene type direction distance location
LOC122325568 NA coding downstream 67892 7540125 ~ 7540240 (-)
nfkbiaa NA coding downstream 237937 7368311 ~ 7370195 (-)
LOC122324873 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 coding downstream 282455 7321656 ~ 7325677 (-)
LOC122324872 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933 coding downstream 294810 7308710 ~ 7313322 (-)
LOC122325143 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 350558 7255499 ~ 7257574 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding upstream 236448 7857022 ~ 7874571 (-)
faslg LOC107581522,LOC107669138,LOC107712839 coding upstream 360105 7980679 ~ 7983050 (-)
si:dkey-86e18.1 LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794 coding upstream 365317 7985891 ~ 7992309 (-)
LOC122324580 si:dkey-86e18.2,LOC107658157,LOC107739861,LOC107597817 coding upstream 372023 7992597 ~ 7996438 (-)
jun jun,LOC107712863,LOC107581481,LOC107739852 coding upstream 378017 7998591 ~ 8000531 (-)
G136724 NA non-coding downstream 120721 7485893 ~ 7487411 (-)
G136717 NA non-coding downstream 211840 7360867 ~ 7396292 (-)
G136716 NA non-coding downstream 326328 7281372 ~ 7281804 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding downstream 356260 7152468 ~ 7251872 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding downstream 456378 7151390 ~ 7151754 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding upstream 49006 7669580 ~ 7771831 (-)
G136774 NA non-coding upstream 55369 7675943 ~ 7677043 (-)
G136763 NA non-coding upstream 56542 7677116 ~ 7782233 (-)
G136792 NA non-coding upstream 269684 7890258 ~ 7893325 (-)
G136804 NA non-coding upstream 291574 7912148 ~ 7912564 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 6530 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 171634 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 178850 7424836 ~ 7429282 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other downstream 267677 7335388 ~ 7340455 (-)
G136707 NA other downstream 302408 7296861 ~ 7305724 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other upstream 73381 7693955 ~ 7696065 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other upstream 165028 7785602 ~ 7799589 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 702539 8323113 ~ 8644759 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other upstream 971118 8591692 ~ 8600955 (-)
G137054 LOC107660256,LOC107566921 other upstream 1198280 8818854 ~ 8819327 (-)

Expression


Co-expression Network