prpf39 (prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385)


Basic Information

Item Value
gene id prpf39
gene name prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26218579 ~ 26229745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219088.1
GCAACGCGTCCGTGTCCTTCTCTCGTCGCGAGACGCCACGGGTGTTGAGTGCGTTACAGCGCGGCCGTCTGACCACATGTTCTCGAGCGCCTAAAACTTCGAAGAAGTTGTGAAAATAACCGCCGTTTAAACCCAGTTTCATGGAAGACTCTGGTGAGCCCATGACCGGGATGTTGGACACGAATGCCCCTGATAACGGGGACGCTCCTGCTATGGAGGCCACGGGGCCCGAGTATGGCACAGACCCGGCCGAGACCGACTGGGCCCCGGCTCCCCCGCAAGAGCCGCCCGCTCCTCCGGAAGCCCCCGAGTACGAGCAGAGCCAGCAGCCGCCCGCTCTAGAACAGTACCAGCTGTACTCTGTGGAGCACCTGAAATCCGCAGCGGAGAGCATCGACCACACAGCCAGTCCCCCGGACCCCGGGGCCGAGGGCCTCGCGCAGCAGACGGAGTCGAACGGCCAGCAGGACGAGGCCAAGCCGGCCGCGGCGGAGGACTCCGAGAGCCCTTCCAACATGGAGCTGGAAGACGCTCCCAAAGAAGCGGCCGAAGCGATGGAACCGGCCTCCGACGCAGACGCGGCCGTCGCGCAAGAACCAGCGCTTCCTGCGGATTACGAGCGGCTCTTCAAAGTAGTGGAGGATAACCCCGAAGACTTCAACGGCTGGGTCTACCTTCTGCAGTATGTTGAGCAGGAGaaCCACTTGGTGGCTTCGAGGAAGGCGTTCGATGCCTTCTTCCTGCACTACCCCTACTGTTACGGCTACTGGAAGAAGTATGCAGACATTGAGAAGAAACACGGCTACATACACATGGCCGACGAGGTTTACCGCCGAGGTCTCCAGGCTATTCCTCTCAGCGTCGACCTGTGGCTGCATTATATCACTTTCCTGCGAGAAAACCAAGATACCAGCGACGGAGAGGCCGAAAATCGCATCAGAGCGTCCTACGAGCACGCCGTTCTGGCCTGTGGCACAGATTTCCGCTCGGACCGTCTGTGGGAAGCTTACATCACGTGGGAGACGGAGCAGGGCAAGCTGGCCAACGTCACGGCCGTCTACGACCGCATCCTCTGCATTCCCACCCAGCTGTACTCCCAGCATTTCCAGAAGTTCAAAGAACACGTCCAGAGCAACAACCCCaagcacttcctgtctgaggaggAGTTTGTGCAGCTCAGAGTGGAGCTAGCTAACGCTAACAAGCCTAGCGGAGACGACGCGCCGGGCGAAGAGCTTCCGCCGGGGACGGACGACCTGCCGGATCCTGCCAAGAGAGTGACGGAGATCGAGAACATGAGGCATAAGGTGATTGAGACGCGCCAGGAGGTGTTTAACCACAACGAGCATGAAGTCAGCAAGCGCTGGGCCTTCGAGGAAGGGATAAAGCGGCCGTACTTCCACGTCAAAGCCTTGGAGAAGACCCAGCTGAACAACTGGAGGGAGTACCTGGACTTCGAGCTGGAGAACGGCACTCCGGAGCGCGTGGTGGTTCTGTTCGAGCGCTGCCTGATCGCCTGCGCTCTCTACGAGGAGTTCTGGATCAAGTATGCTAAGTATCTGGAGAGCTACAGCGTTGAAGGCGTCCGGCACATCTTCAAAAAGGCCTGCACCATCCACCTGCCTAAGAAGCCCACCGTTCACCTCCTCTGGGCCGCCTTCGAGGAACAGCAAGGCAGCATCGACGAGGCGCGGCGGATCTTGAAGGACATGGAGGAGTCCGTCGCAGGCCTGGCCATGGTGAGGCTGAGGAGGGTGAGTCTGGAGCGGCGTCATGGGAACATGGACGAAGCCGAGGCCCTGCTGAGAGACGGCATCACCTACGGCAAGAACAGCAGCGAGTCGTCCTTCTTCGCCGTCAAACTGGCCCGACAGCTGGTCAAAGTGCAGAAGAGCATCGGGAaagccaagaaagtgctgctggaGGCCGTCGAGAAAGACGAGACGAACCCGAAGCTGTACCTGAACCTGCTGGAGCTGGAGTACAGCGGCGATGTGCAGCAGAACGAGGCCGAGATCATGGCCTGCTTCGACCGAGCTCTGAGCAGCTCCATGCCGCTGGAGCAGCGCGTCATCTTCTCTCAGCGCAAGCTCGAGTTCCTCGAGGACTTCGGCAGCGACATCAACGTGCTGGTGGCGGCGTATGAGCAGCATCAGAGACTCGTGACGGAGCAGGAAGCGCTGAAGAGGAAAGCGGAGAACGGCTCAGAGGAGCCGGACTCGAAGAGACAGCGAACGGACGACCAATCAGGAGCCTCGGGTCAGATGATGCAGGACATGCAGGCCAATCACGCCGGATACAACTACAACAACTGGTACCAGtaTAACTCGTGGGGCGGTCAGAACTCCTGGGGTCAGTACGGTCAGTATGGTCAGTATAACCAGTACTACCCACCTCCTCCCACATAACGGAGCGCCGCGTCCTTCAGCTTCAACATTCACCGTCTCCAGTCTAAcgctgtgttttctgttttttggcACGAGCTCTTTTTCCCTCTTTAAGTGCAAGTGAGTTTTTAACGAGCCGGGTTGGTTTAGTGCTTCTTGGAGGTTTAGTTGTGTTCGTTTGGAAGACGTTCTGCTCCTCGTCTCTGCTCCTGTGATCCTGTTTTCCCAGAGAAACGTGAAAcatgaagatgttttttattttgacttggTTTCATAATAAAGAGATTGACATCCTA
>XM_043219089.1
GCAACGCGTCCGTGTCCTTCTCTCGTCGCGAGACGCCACGGGTGTTGAGTGCGTTACAGCGCGGCCGTCTGACCACATGTTCTCGAGCGCCTAAAACTTCGAAGAAGTTGTGAAAATAACCGCCGTTTAAACCCAGTTTCATGGAAGACTCTGGTGAGCCCATGACCGGGATGTTGGACACGAATGCCCCTGATAACGGGGACGCTCCTGCTATGGAGGCCACGGGGCCCGAGTATGGCACAGACCCGGCCGAGACCGACTGGGCCCCGGCTCCCCCGCAAGAGCCGCCCGCTCCTCCGGAAGCCCCCGAGTACGAGCAGAGCCAGCAGCCGCCCGCTCTAGAACAGTACCAGCTGTACTCTGTGGAGCACCTGAAATCCGCAGCGGAGAGCATCGACCACACAGCCAGTCCCCCGGACCCCGGGGCCGAGGGCCTCGCGCAGCAGACGGAGTCGAACGGCCAGCAGGACGAGGCCAAGCCGGCCGCGGCGGAGGACTCCGAGAGCCCTTCCAACATGGAGCTGGAAGACGCTCCCAAAGAAGCGGCCGAAGCGATGGAACCGGCCTCCGACGCAGACGCGGCCGTCGCGCAAGAACCAGCGCTTCCTGCGGATTACGAGCGGCTCTTCAAAGTAGTGGAGGATAACCCCGAAGACTTCAACGGCTGGGTCTACCTTCTGCAGTATGTTGAGCAGGAGaaCCACTTGGTGGCTTCGAGGAAGGCGTTCGATGCCTTCTTCCTGCACTACCCCTACTGTTACGGCTACTGGAAGAAGTATGCAGACATTGAGAAGAAACACGGCTACATACACATGGCCGACGAGGTTTACCGCCGAGGTCTCCAGGCTATTCCTCTCAGCGTCGACCTGTGGCTGCATTATATCACTTTCCTGCGAGAAAACCAAGATACCAGCGACGGAGAGGCCGAAAATCGCATCAGAGCGTCCTACGAGCACGCCGTTCTGGCCTGTGGCACAGATTTCCGCTCGGACCGTCTGTGGGAAGCTTACATCACGTGGGAGACGGAGCAGGGCAAGCTGGCCAACGTCACGGCCGTCTACGACCGCATCCTCTGCATTCCCACCCAGCTGTACTCCCAGCATTTCCAGAAGTTCAAAGAACACGTCCAGAGCAACAACCCCaagcacttcctgtctgaggaggAGTTTGTGCAGCTCAGAGTGGAGCTAGCTAACGCTAACAAGCCTAGCGGAGACGACGCGCCGGGCGAAGAGCTTCCGCCGGGGACGGACGACCTGCCGGATCCTGCCAAGATAAAGCGGCCGTACTTCCACGTCAAAGCCTTGGAGAAGACCCAGCTGAACAACTGGAGGGAGTACCTGGACTTCGAGCTGGAGAACGGCACTCCGGAGCGCGTGGTGGTTCTGTTCGAGCGCTGCCTGATCGCCTGCGCTCTCTACGAGGAGTTCTGGATCAAGTATGCTAAGTATCTGGAGAGCTACAGCGTTGAAGGCGTCCGGCACATCTTCAAAAAGGCCTGCACCATCCACCTGCCTAAGAAGCCCACCGTTCACCTCCTCTGGGCCGCCTTCGAGGAACAGCAAGGCAGCATCGACGAGGCGCGGCGGATCTTGAAGGACATGGAGGAGTCCGTCGCAGGCCTGGCCATGGTGAGGCTGAGGAGGGTGAGTCTGGAGCGGCGTCATGGGAACATGGACGAAGCCGAGGCCCTGCTGAGAGACGGCATCACCTACGGCAAGAACAGCAGCGAGTCGTCCTTCTTCGCCGTCAAACTGGCCCGACAGCTGGTCAAAGTGCAGAAGAGCATCGGGAaagccaagaaagtgctgctggaGGCCGTCGAGAAAGACGAGACGAACCCGAAGCTGTACCTGAACCTGCTGGAGCTGGAGTACAGCGGCGATGTGCAGCAGAACGAGGCCGAGATCATGGCCTGCTTCGACCGAGCTCTGAGCAGCTCCATGCCGCTGGAGCAGCGCGTCATCTTCTCTCAGCGCAAGCTCGAGTTCCTCGAGGACTTCGGCAGCGACATCAACGTGCTGGTGGCGGCGTATGAGCAGCATCAGAGACTCGTGACGGAGCAGGAAGCGCTGAAGAGGAAAGCGGAGAACGGCTCAGAGGAGCCGGACTCGAAGAGACAGCGAACGGACGACCAATCAGGAGCCTCGGGTCAGATGATGCAGGACATGCAGGCCAATCACGCCGGATACAACTACAACAACTGGTACCAGtaTAACTCGTGGGGCGGTCAGAACTCCTGGGGTCAGTACGGTCAGTATGGTCAGTATAACCAGTACTACCCACCTCCTCCCACATAACGGAGCGCCGCGTCCTTCAGCTTCAACATTCACCGTCTCCAGTCTAAcgctgtgttttctgttttttggcACGAGCTCTTTTTCCCTCTTTAAGTGCAAGTGAGTTTTTAACGAGCCGGGTTGGTTTAGTGCTTCTTGGAGGTTTAGTTGTGTTCGTTTGGAAGACGTTCTGCTCCTCGTCTCTGCTCCTGTGATCCTGTTTTCCCAGAGAAACGTGAAAcatgaagatgttttttattttgacttggTTTCATAATAAAGAGATTGACATCCTA

Function

symbol description
prpf39 Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39).

NR:

description
PREDICTED: pre-mRNA-processing factor 39 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219088.1 True 2683 mRNA 0.58 14 26218579 26229745
XM_043219089.1 False 2575 mRNA 0.58 13 26218579 26229745

Neighbor

gene id symbol gene type direction distance location
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding upstream 23617 26185676 ~ 26194962 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding upstream 149534 26055121 ~ 26069045 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding upstream 187593 26024861 ~ 26030986 (+)
LOC122324854 LOC107575530 coding upstream 224485 25982812 ~ 25994094 (+)
LOC122325520 LOC107712196,LOC107659793,LOC107564338 coding upstream 238201 25979467 ~ 25980378 (+)
faua fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549 coding downstream 1041 26230786 ~ 26234218 (+)
trnas-gcu_31 NA coding downstream 327938 26557683 ~ 26557764 (+)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 333911 26563656 ~ 26565704 (+)
LOC122324339 LOC107548517,LOC107662059 coding downstream 490753 26720498 ~ 26725162 (+)
LOC122324696 slc25a45,LOC107662097,LOC107702892,LOC107722745 coding downstream 689310 26919055 ~ 26926040 (+)
G142085 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149 non-coding upstream 2432 26208165 ~ 26216147 (+)
LOC122325287 NA non-coding upstream 5752 26211657 ~ 26212827 (+)
G142106 NA non-coding upstream 56607 26141928 ~ 26161972 (+)
G142101 NA non-coding upstream 75262 26134018 ~ 26143317 (+)
G142095 NA non-coding upstream 83804 26102811 ~ 26134775 (+)
G142300 NA non-coding downstream 61504 26291249 ~ 26301914 (+)
G142304 NA non-coding downstream 81805 26311550 ~ 26311958 (+)
G142305 NA non-coding downstream 93190 26322935 ~ 26328268 (+)
G142306 NA non-coding downstream 99980 26329725 ~ 26365642 (+)
G142331 NA non-coding downstream 237727 26467472 ~ 26467852 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other upstream 179371 25916034 ~ 26039208 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other upstream 194347 26003763 ~ 26024232 (+)
LOC122325160 LOC107564323,LOC107659819 other upstream 215656 25996414 ~ 26002923 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 389664 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 907152 25250898 ~ 25311427 (+)
G142173 NA other downstream 5676 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 248806 26478551 ~ 26479201 (+)
G142416 NA other downstream 673502 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 742500 26972245 ~ 27093757 (+)

Expression


Co-expression Network