faua (fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549)


Basic Information

Item Value
gene id faua
gene name fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26230786 ~ 26234218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219091.1
GACACGTCACAGTTACGTCACGGTCACGTGGGCAGCGCCCTTCCCAGAGTTCTTTGCTCCGCGCATGCGCGCTGTCCTTTTCTCGCCCAGGTGTGGATCGACTAGCATCAACCAATCTCATCATGCAGCTGTTCCTCCGCGCTCAGACTCTTCACACGCTCCAGGTGACCGGCCAGGAGAGCGTCCTTGACCTGAAGgcTCGCGTCCAGGCTCTGGAAGGGCTGTCTGTGGAGGACCAGGTTCTTCTTCTGTCCGGAGCTCCTCTGGAGGATCATGTGTCTCTGCTGGACAGCGGCGTCTCGGAGCACTGCACCATCGAGCTGACCGCCAGACTTCTGGGAGGTAAAGTCCACGGATCTCTGGCTCGTGCCGGTAAAGTACGAGGACAGACACCtaaaGTGGAcaagcaggagaagaagaagaagaagacgggCCGCGCCAAGCGTCGGATCCAGTACAACCGGCGCTTCGTGAACGTGGTCCCGACCTTCGGCAAGAAGAAGGGCCCGAACGCCAACTCCTAAAGAACTGAGAAGAAACTccgagagagagaaataaacatgaaataaaga

Function

symbol description
fau A structural constituent of ribosome. Involved in antimicrobial humoral immune response mediated by antimicrobial peptide and defense response to other organism. Located in cytosolic ribosome and extracellular space. Part of cytosolic small ribosomal subunit.

NR:

description
ubiquitin-like protein fubi and ribosomal protein S30

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02983 RP-S30e, RPS30; small subunit ribosomal protein S30e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219091.1 True 572 mRNA 0.57 5 26230786 26234218

Neighbor

gene id symbol gene type direction distance location
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding upstream 1041 26218579 ~ 26229745 (+)
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding upstream 35824 26185676 ~ 26194962 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding upstream 161741 26055121 ~ 26069045 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding upstream 199800 26024861 ~ 26030986 (+)
LOC122324854 LOC107575530 coding upstream 236692 25982812 ~ 25994094 (+)
trnas-gcu_31 NA coding downstream 323465 26557683 ~ 26557764 (+)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 329438 26563656 ~ 26565704 (+)
LOC122324339 LOC107548517,LOC107662059 coding downstream 486280 26720498 ~ 26725162 (+)
LOC122324696 slc25a45,LOC107662097,LOC107702892,LOC107722745 coding downstream 684837 26919055 ~ 26926040 (+)
LOC122325624 NA coding downstream 706768 26940986 ~ 26941120 (+)
G142085 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149 non-coding upstream 14639 26208165 ~ 26216147 (+)
LOC122325287 NA non-coding upstream 17959 26211657 ~ 26212827 (+)
G142106 NA non-coding upstream 68814 26141928 ~ 26161972 (+)
G142101 NA non-coding upstream 87469 26134018 ~ 26143317 (+)
G142095 NA non-coding upstream 96011 26102811 ~ 26134775 (+)
G142300 NA non-coding downstream 57031 26291249 ~ 26301914 (+)
G142304 NA non-coding downstream 77332 26311550 ~ 26311958 (+)
G142305 NA non-coding downstream 88717 26322935 ~ 26328268 (+)
G142306 NA non-coding downstream 95507 26329725 ~ 26365642 (+)
G142331 NA non-coding downstream 233254 26467472 ~ 26467852 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other upstream 191578 25916034 ~ 26039208 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other upstream 206554 26003763 ~ 26024232 (+)
LOC122325160 LOC107564323,LOC107659819 other upstream 227863 25996414 ~ 26002923 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 401871 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 919359 25250898 ~ 25311427 (+)
G142173 NA other downstream 1203 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 244333 26478551 ~ 26479201 (+)
G142416 NA other downstream 669029 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 738027 26972245 ~ 27093757 (+)

Expression


Co-expression Network