LOC122324570 (LOC107579823)


Basic Information

Item Value
gene id LOC122324570
gene name LOC107579823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17586384 ~ 17595986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219098.1
TTTCCTCTCACAGTTTAGTTCCCATGCAGTGTATCAAACTGTAAATGTATTCTCAGAAATCCTTTCAGAATAAATGAAATCGCACAGTCGCAATTACGATGGTTTTGTCATCACATATTAGACTATTTGGATATCTTGTCCTTATAACTGGAAATTATGAtgTGAAAGCCTGGACTTACAATTATAGTACGAACGTTAATATGGACTGGACAACAGCTCGCCAGTGGTGTCAGGAGCGCTTCACTGATATGGTGGCCATTCAAAACCATAAAGAAGTTGAATACCTCAACCAATTTCTACCTTTCCATCCAACGTACTATTGGATTGGCATTAGGAAGATTGATGGTAACTGGACTTGGGTTGGGACAAAAAAGATCTTAGACCCTGGCGCAGAAAACTGGGCTGAAAATGAACCAAATAACAAGGGATCTGGACAAGACTGCGTAGAGATTTACATTAAGCGGAGCAAAGAAACAGCCAAGTGGAATGATGAGAAGTGCAGCAAAAAGAAAGCAACTGTCTGTTATTTAGCCTCCTGCTCAAAGGAGTCCTGCAGTGAGCATGCTGAGTGTGTGGAGAATATTGGGAGCTACGAATGTCAATGTCACCCAGGTTTTAAGGGGCCACGCTGTGAGGAAGCTGTCCAGTGTCTGGCCATTATCGATGCCCCTGGTGGTGGGAATATGAACTGCACTCACCCTTTTTCCATTAATAGCTTCAACTCCAGTTGTGAGTTCAGGTGTGAAGAGGGATTTGAGCTCAAGGGCTCAAATACAACATGGTGTGACCAGACTGGGAACTGGACACACAAACCCCCCACTTGCCAAGCTGTGGCTTGTGACCCCCTCATGACCCCTGCAAACAGTCAACTGACATGTGCTGATCCACTGGGAAAGTTCTCTTTTCGCTCTTCTTGTAACACTGCTTGTGAAGAGGGATACACACTGAGAGGAGAAACCACACTCACTTGTCAGAGTGATGGCAACTGGTCAGCACCATCACCTGCATGTGAAGTTATAAGATGTGATGCTCTGGAGTCTGTTCAGCATGGCTCTCTGCGCTGTCGGGACCACCTGGGGAAGTTCAGTTATGGTTCCCTGTGCTGGCTGGAGTGTGCAGTTGGATTTACTTTGAATGGAACTAATTCTACTTACTGCACCTTGCAAGGGAAATGGAGCCAAGAGTTTCCTGTTTGTCAAGCACTGCAGTGCAGGCCCTTAATGAACCCCTCTCGCGGCACTGTAAACTGCAGTCATCCTAATGGGCAGTTCAGCTTCGGTACAGTGTGTGAAGTAAGCTGTGAGGCAGGCTTCAAACTACATGGCACACCCCAAACAGAGTGCTTGGATATGGGAAAGTGGACCGATGCCACACCATTCTGCTTCGCTCAACAGTGCCCCCGTTTGACTGCCCCGGTCAATGGCTGGTTGAACTGTTCTCATCCTCACTCTCTGTTTAGCTTTGGCTCCCAGTGCTTCTCGGGATGTGAGCCTGGCTTTGAGATTACAGGAGAATCTAACATGGAGTGCTCTGCATCTGGGAACTGGAGTCAGGAGATGCCCTCTTGTGCTGCTGTTCGCTGTAAGCCCCTTTTACTCTTTCATCTTCCTGAGCTGGGACCTCCACCCTCGATGAACTGCTCTCACCCACATGGAAACTTCAGCTTTGGTTCTGAGTGTATGTTTCAGTGCGCCGAGAGTCAGGAGCTCAGTGGAACCAGTCAGCTCTTCTGCTCCTCCAGTGGGTCCTGGACAAACTCTCCACCCAGATGTGTTGTAAAGAAGATGTCATTGAGTACGGGCATGCTGATGTATACAGCTGTGGGAGCTGCTTCTTCAGCTGGTCTACTTCTACTTGGAGGActaatttttctgttgatgcGCCAATTCAGCAAAAAGGGGATGCATGTGGTCTCCAGGCATCTGAGGAGGAGTGAGGCCTTGTCTGAAGGGGTCCAGCTTAAAGCTCTGTGAGTCTAGACTGATATTCTGCTGGGGAAGTGAATATGAACCCGAACACTCCAGCTCAACGGGCAGACCTCCACAAGAGGGCGCTGTGGTCACAAAAATGGCAAGAAAAGAACTTCTCAGCGCAAGTGTAGGCGTTATGTCTTTAGCTTAAGGATATTTCGGCCACATGCGTTTTTTCCCCAGGTCACTCAAATCCATGGTTTAACCAAATTACGATTTAGATA
>XM_043219099.1
TTTCCTCTCACAGTTTAGTTCCCATGCAGTGTATCAAACTGTAAATGTATTCTCAGAAATCCTTTCAGAATAAATGAAATCGCACAGTCGCAATTACGATGGTTTTGTCATCACATATTAGACTATTTGGATATCTTGTCCTTATAACTGGAAATTATGAtgTGAAAGCCTGGACTTACAATTATAGTACGAACGTTAATATGGACTGGACAACAGCTCGCCAGTGGTGTCAGGAGCGCTTCACTGATATGGTGGCCATTCAAAACCATAAAGAAGTTGAATACCTCAACCAATTTCTACCTTTCCATCCAACGTACTATTGGATTGGCATTAGGAAGATTGATGGTAACTGGACTTGGGTTGGGACAAAAAAGATCTTAGACCCTGGCGCAGAAAACTGGGCTGAAAATGAACCAAATAACAAGGGATCTGGACAAGACTGCGTAGAGATTTACATTAAGCGGAGCAAAGAAACAGCCAAGTGGAATGATGAGAAGTGCAGCAAAAAGAAAGCAACTGTCTGTTATTTAGCCTCCTGCTCAAAGGAGTCCTGCAGTGAGCATGCTGAGTGTGTGGAGAATATTGGGAGCTACGAATGTCAATGTCACCCAGGTTTTAAGGGGCCACGCTGTGAGGAAGCTGTCCAGTGTCTGGCCATTATCGATGCCCCTGGTGGTGGGAATATGAACTGCACTCACCCTTTTTCCATTAATAGCTTCAACTCCAGTTGTGAGTTCAGGTGTGAAGAGGGATTTGAGCTCAAGGGCTCAAATACAACATGGTGTGACCAGACTGGGAACTGGACACACAAACCCCCCACTTGCCAAGCTGTGGCTTGTGACCCCCTCATGACCCCTGCAAACAGTCAACTGACATGTGCTGATCCACTGGGAAAGTTCTCTTTTCGCTCTTCTTGTAACACTGCTTGTGAAGAGGGATACACACTGAGAGGAGAAACCACACTCACTTGTCAGAGTGATGGCAACTGGTCAGCACCATCACCTGCATGTGAAGTTATAAGATGTGATGCTCTGGAGTCTGTTCAGCATGGCTCTCTGCGCTGTCGGGACCACCTGGGGAAGTTCAGTTATGGTTCCCTGTGCTGGCTGGAGTGTGCAGTTGGATTTACTTTGAATGGAACTAATTCTACTTACTGCACCTTGCAAGGGAAATGGAGCCAAGAGTTTCCTGTTTGTCAAGCACTGCAGTGCAGGCCCTTAATGAACCCCTCTCGCGGCACTGTAAACTGCAGTCATCCTAATGGGCAGTTCAGCTTCGGTACAGTGTGTGAAGTAAGCTGTGAGGCAGGCTTCAAACTACATGGCACACCCCAAACAGAGTGCTTGGATATGGGAAAGTGGACCGATGCCACACCATTCTGCTTCGCTCAACAGTGCCCCCGTTTGACTGCCCCGGTCAATGGCTGGTTGAACTGTTCTCATCCTCACTCTCTGTTTAGCTTTGGCTCCCAGTGCTTCTCGGGATGTGAGCCTGGCTTTGAGATTACAGGAGAATCTAACATGGAGTGCTCTGCATCTGGGAACTGGAGTCAGGAGATGCCCTCTTGTGCTGCTGTTCGCTGTAAGCCCCTTTTACTCTTTCATCTTCCTGAGCTGGGACCTCCACCCTCGATGAACTGCTCTCACCCACATGGAAACTTCAGCTTTGGTTCTGAGTGTATGTTTCAGTGCGCCGAGAGTCAGGAGCTCAGTGGAACCAGTCAGCTCTTCTGCTCCTCCAGTGGGTCCTGGACAAACTCTCCACCCAGATGTGTTGTAAAGAAGATGTCATTGAGTACGGGCATGCTGATGTATACAGCTGTGGGAGCTGCTTCTTCAGCTGGTCTACTTCTACTTGGAGGActaatttttctgttgatgcGCCAATTCAGCAAAAAGGCTAAATACAGTCGGGCCGACTCTTTATGGAAAGAGAATTTGAACCCAATTtttgaattcaattaaaatacaaattcacaataaaaaacatgttttcttgttttttttcttgcaataaataaaacatttga

Function

NR:

description
PREDICTED: P-selectin-like, partial

GO: NA

KEGG:

id description
K06494 SELE, CD62E; selectin, endothelial cell

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219098.1 True 2194 mRNA 0.48 12 17586384 17595986
XM_043219099.1 False 2029 mRNA 0.46 12 17589697 17595986

Neighbor

gene id symbol gene type direction distance location
atf6 atf6,LOC107555632,LOC107698395,LOC107710557,LOC107726471,LOC107601246,LOC107696152 coding downstream 31437 17523618 ~ 17554947 (-)
fam102bb fam102bb,fam102b,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 70904 17499479 ~ 17515480 (-)
rock2b LOC107555625,LOC107698402,LOC107696174,LOC107726463,LOC107726633 coding downstream 104850 17455737 ~ 17481534 (-)
LOC122325537 LOC107698338,LOC107555613,LOC107726610 coding downstream 130947 17453042 ~ 17455437 (-)
paplnb LOC107698340,LOC107555612 coding downstream 146373 17428506 ~ 17440011 (-)
LOC122324572 NA coding upstream 1407 17597393 ~ 17602425 (-)
LOC122324568 NA coding upstream 7672 17603658 ~ 17608945 (-)
scyl3 scyl3,LOC107698387,LOC107726436,LOC107599096,LOC107732421,LOC107553510,LOC107696147 coding upstream 33445 17629431 ~ 17635856 (-)
tprb LOC107732389,LOC107553507,LOC107696139,LOC107599094 coding upstream 48992 17644978 ~ 17662064 (-)
pdcb pdcb,LOC107553506,LOC107698383,LOC107732392,LOC107726497,LOC107696164,LOC107599093 coding upstream 67516 17663502 ~ 17666366 (-)
LOC122324574 NA non-coding downstream 26914 17555855 ~ 17559470 (-)
LOC122324490 NA non-coding downstream 176889 17396342 ~ 17409495 (-)
G139323 NA non-coding downstream 190386 17394864 ~ 17395998 (-)
G139317 NA non-coding downstream 250064 17336007 ~ 17336320 (-)
G139302 NA non-coding downstream 460474 17125437 ~ 17125910 (-)
G139386 NA non-coding upstream 19162 17615148 ~ 17615699 (-)
G139387 NA non-coding upstream 19807 17615793 ~ 17616508 (-)
G139565 NA non-coding upstream 193212 17789198 ~ 17794072 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding upstream 199498 17795484 ~ 17799866 (-)
G139590 NA non-coding upstream 292582 17888568 ~ 18180187 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 158261 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1124168 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1219585 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1481657 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 1592739 15990149 ~ 15993645 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 205416 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 747477 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 810041 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1658748 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1665480 19261466 ~ 19262952 (-)

Expression


Co-expression Network