si:dkey-86e18.1 (LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794)


Basic Information

Item Value
gene id si:dkey-86e18.1
gene name LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7985891 ~ 7992309 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219115.1
TCCGTGTTGACGGAAGTGCTTTGGGAATGGCGAGAAACGAGGAGAAGCAGCTCGGAAAACTCAATCGCCTCTGGCtccagaaagagagagaggAGGGTCGCATTAAAGATGTTCACGTGTCAAGGCCAAAGCTTGGGACGTTAAACTCAGCGGCAGCGGTGAAGAAGTGGATGCCGAGCATCAAGAAGGAGATCGAGTACTATCTGCAGCAGTCGCAGTTATCTCACTACCCTGAGAGGAAGATAGACGAGTTCCGCCGGCATATTGAGGATCTGGAGACTGAATACAAACGCTTCCTCAAGAAACTACGCTCCCTGGACCCTACCTGCAAACACAAGCCTTGGGAGCCTCGAGCATATGCCAAGAGGAGGCAGGATCCAGTCAGCAATCAAAACACCTctaAAAAACTGTGCCTCCACGGCCCAAGCAGTCCTTgcagagaggaagaggatgtTAATGAGGACATAGACCCAGAGAAAGCAGGAAACCACATACCTCAGACTGTTATAATACAAGAACTACACGCCCAGTCAGCTCCCGCTACCGCCCAAGCCCCCGAGCCCCCAGACCAGGACCTCCCGCTGCGCTTCGATCAGTCCCGACTCGCCGTGGCGGTGGCCAGTTCCCGCGTGGCTCTCGCCGGGCAGCAACAAGACACAGGTACACTGACACGAGTGCTGCTCACCGGCCTGCCCAACCTCCACAGCCTCCCGCTGGCACAGACGCTTCAGCCTCCCGGGGCCGAAACAGCCCAGAGTAAATCTGAACATTTACTGGGACTCGGCTGCTACTCCTCGTCCTCAGAGGAGGAGATGTAGTTTAGTTGAATGCACGGCGCTgcacatttaaagggacagttcgctCGTAAACACAaccgtcatcatttacttaacCTCATGTCAACCCAGACTTTGAATAATCTTcggaaacacaaattaagatattttgaatgaaatctgAATGGTTTATGTCCCTCCAATGAAAGTCCAGGTAACCAGCTTGAATATAAGTCTTTTTATTgatgaacagatttaatttgCACACACAAGAACCAGTGAGGTTTGTTTTTATCATGTGACACAAAATCTGTGATTGTCATATGGGATTTGCTGCATGTGTTATATATCTAATAAAAAGCctatattgcaaataaaacaaataaagagtCCCTTCAAACAGCTTGGATTAAACCGCTCAGTTGATATGGGTTCCTTTGGTTACCTGGTCTTTCAACATGGAGACTGAAACCTCTTATTAGGTTTCATTCAAAACATCTGTGTGTCCTGTAGATGGGtaactgatgacagaattgtcatttttgggtgaactatccctttaatatttaacatttgatATTCAAACTATATCTGATGCACGAAAGTGAAACTTGAAAGTAAAACATGTTCGAGTGAAACCTGAAAGCTGTAAATcacctgtgtttgtgtgtttataatatttgtcTTAACCCAGTTTAGTCTAGGCTATGAATGCGTTAAGCAGTGCTAAGAAGAGAGCGGAAATGGTTAGTTGTGGTTAGACTAGAATTCTCAATGGGATATAAGCGATAActtgtcaaaaacaaaatatgaagtgtttacttttatgtatgtttatctGAAGGGCTCATCTTCGGAATCTTTAAAGTTTCAATTTCAACCACATAGGTTTTTACAGGTTTGATGCTGCAAACATTCTGTTTACGTGATATTCACTTGTACTTGACAAAATAAGTCATGGACCGGCGctttaagaaataaagaaaacgaAACACTCAA
>XM_043219116.1
TCCGTGTTGACGGAAGTGCTTTGGGAATGGCGAGAAACGAGGAGAAGCAGCTCGGAAAACTCAATCGCCTCTGGCtccagaaagagagagaggAGGGTCGCATTAAAGATGTTCACGTGTCAAGGCCAAAGCTTGGGACGTTAAACTCAGCGGCAGCGGTGAAGAAGTGGATGCCGAGCATCAAGAAGGAGATCGAGTACTATCTGCAGCAGTCGCAGTTATCTCACTACCCTGAGAGGAAGATAGACGAGTTCCGCCGGCATATTGAGGATCTGGAGACTGAATACAAACGCTTCCTCAAGAAACTACGCTCCCTGGACCCTACCTGCAAACACAAGCCTTGGGAGCCTCGAGCATATGCCAAGAGGAGGCAGGATCCAGTCAGCAATCAAAACACCTctaAAAAACTGTGCCTCCACGGCCCAAGCAGTCCTTgcagagaggaagaggatgtTAATGAGGACATAGACCCAGAGAAAGCAGGAAACCACATACCTCAGACTGTTATAATACAAGAACTACACGCCCAGTCAGCTCCCGCTACCGCCCAAGCCCCCGAGCCCCCAGACCAGGACCTCCCGCTGCGCTTCGATCAGTCCCGACTCGCCGTGGCGGTGGCCAGTTCCCGCGTGGCTCTCGCCGGGCAGCAACAAGACACAGTTTGGTAAGAGAACTAGGGCTTCGCACTGCGGCCCACGATCCGACCCCAAAACCCCTCGTACATCAGCATCAAGAACTGCTTAGCAGGCGACACTTCTGGGAAACTGAGCAAGAGCAGAGCGTTGTTGCCAAGCAGCGGCGGTGATGTCTTACTCATTCAGAATGTCTGCGTGTGACTTCTAGTGCCATTGGCTACATTTTCTCGCACGGCAGACAGGGTTTCCCATACCTGTGAGGTGAAGTATGAAAACTGATGCAACTGCTGCACACGTCCGTTATCAAAAAAGACAAAGTTTCCCTTACAGAATTTATGACAttttcagctctttttttttgtcatccatGACATTGAAATGCCTTGGAAAAGGCTTTGCTTGCGGTATACGTTTTGAACGTCCCACATCGTTACAATGACTAGTCATGACAcgtgtgtatttaaatacatatatcaATATAATCGAAACTTAGCTATTATAACTGCCTCATTGAGTTCAGTATAGATGAATTATAGCTGCTCTTAAAACTGATAATTtggtcacacttttttttacagtcctgttcctCTAGGTAACTAGGTAACATTGAACCCGCCCGAAGCTAAGCCTAACCCATTTA

Function

NR:

description
uncharacterized protein LOC109902675 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219115.1 True 1775 mRNA 0.45 5 7986809 7992309
XM_043219116.1 False 1275 mRNA 0.49 6 7985891 7992309

Neighbor

gene id symbol gene type direction distance location
faslg LOC107581522,LOC107669138,LOC107712839 coding downstream 2841 7980679 ~ 7983050 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding downstream 111320 7857022 ~ 7874571 (-)
LOC122324531 foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483 coding downstream 365317 7608132 ~ 7620574 (-)
LOC122325568 NA coding downstream 445651 7540125 ~ 7540240 (-)
nfkbiaa NA coding downstream 615696 7368311 ~ 7370195 (-)
LOC122324580 si:dkey-86e18.2,LOC107658157,LOC107739861,LOC107597817 coding upstream 288 7992597 ~ 7996438 (-)
jun jun,LOC107712863,LOC107581481,LOC107739852 coding upstream 6282 7998591 ~ 8000531 (-)
prdx6 prdx6,LOC107712864,LOC107597803 coding upstream 138043 8130352 ~ 8135031 (-)
myoc myoc,LOC107669152,LOC107581474,LOC107712866,LOC107697243,LOC107733809 coding upstream 259143 8251452 ~ 8257991 (-)
vamp4 vamp4,LOC107712870,LOC107733808 coding upstream 269449 8261758 ~ 8271223 (-)
G136804 NA non-coding downstream 73327 7912148 ~ 7912564 (-)
G136792 NA non-coding downstream 92566 7890258 ~ 7893325 (-)
G136763 NA non-coding downstream 203658 7677116 ~ 7782233 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding downstream 214060 7669580 ~ 7771831 (-)
LOC122325257 NA non-coding upstream 161356 8153665 ~ 8182659 (-)
G136909 NA non-coding upstream 210591 8202900 ~ 8207944 (-)
G136935 NA non-coding upstream 268774 8261083 ~ 8261292 (-)
LOC122325283 NA non-coding upstream 319182 8311491 ~ 8313967 (-)
G136962 LOC107687343,LOC107581497,LOC107697261,LOC107712873,LOC107597796 non-coding upstream 383176 8375485 ~ 8637526 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other downstream 186302 7785602 ~ 7799589 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other downstream 289826 7693955 ~ 7696065 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 384289 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 549393 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 556609 7424836 ~ 7429282 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 330804 8323113 ~ 8644759 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other upstream 599383 8591692 ~ 8600955 (-)
G137054 LOC107660256,LOC107566921 other upstream 826545 8818854 ~ 8819327 (-)
G137056 NA other upstream 828845 8821154 ~ 8821719 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other upstream 1263239 9255548 ~ 9283383 (-)

Expression


Co-expression Network