hadhaa (hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212)


Basic Information

Item Value
gene id hadhaa
gene name hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21305710 ~ 21315327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219127.1
GCTGCACGGGCTCGCGCTTGTCAGTGCCTACGCGCGCTCACGGTGTAGTTTTGAGAAGGATGGCGAGCGTGAGATTTCTGTTGACGCGGAGCGGCTGCACAGCTTTAAAAACTATCACAGGTCATGGACAGAGGAGATTCTCTGTATCGTCTGCCGTGCTGGcTCGCACTCATGTCAGCTATGAGGTCAAGGATAATGTCGCTGTGGTACGAATGAATGATCCGACCTCAAAGgtgAATACTCTTGGCAGGCACATGCAGGCAGAGCTGATGGAGGTGATGAATGAGATTTGGGGGAATTCAGCGGTAAAGAGCGCTGTCCTCATCTCCAGTAAACCAGGAAACTTCATCGCAGGAGCCGACCTCAATATGTTTCAGGCCTGCAAGACAGCAGAGGAAGTGTCATATCTGTTACGGGAAGGACAGAAGATGTTTGAGCAGATAGAGAAATCTCCCATCCCTTTTGTGGCGGCTATTAACGGCCCCTGCCTTGGTGGTGGACTGGAGTTTGCCATTGCATGTCAGTACCGCATTGCCACTAAGAGCAAGAAGACGATTCTGGGGACCCCAGAGGTGATGCTGGGACTGCTGCCCGGGGCCGGAGGGACTCAGAGGCTGCCCAAAATGgtTGGACTTCCCGCTGCGTTTGATATGATGCTGACCGGCAGGAACATAAAGGCAGAGAAAGCCAAAAAAATGGGGCTTGTCGATCAGCTGGTGGATCCTCTGGGTccaggactgaagagtccagaAGAGAGGACCGTCGACTATCTGGAGGAAGTGGCTGTTGATTTTGCTAAAGGTGTCGCTGGTAAAAACGTCAcagtgaaaaagaagaaaggacTCATGCAGAAGGTGCAGGATTTTGTAATGGACCTGCCGCCGGTTAGGAAACAGATCTACAAAACTGTCCACAATAAAGTCATGAAACAAAGTAAAGGGCTTTATCCTGCGCCATTGAAGATTATagagtGTGTTCAGACAGGCATTGAGAAAGGAAACGCTGCTGGATTTCTGGCTGAGTCAGAAAACTTTGGCAAGCTGGCGATGACATCAGTGTCCAGagctctgattggcctgttttaTGGTCAGGTGGCCTGCAAAAAGAACCACTTTGGGAAGCCAGAGAGAGAAGTGAAaaaGCTGGCTGTCCTGGGGGCGGGGCTTATGGGAGCAGGTATTGCTCAGGTAACGATAGACAAGGGTGTGGCCACCATCTTAAAAGACACAACGGAGGAAGGACTTGCCAGAGGTCAACAACAGGTGTACAAAGGCCTTCacgacaaaacaaaaaagaagagcCTGACGACATTTGAGAGAGATGGAATCATGTCGTTGCTGTCAGGACAGCTGGACTACCGTGGCTTTGAGAACGCTGACATGGTCATTGAAGCCGTGTTTGAagacctgtcaatcaaacataAAGTGGTGAAGGAGGTTGAGGCCGTGACTCCTCCTCACTGCATCTTTGCCACCAACACATCTGCTCTGCCAATCAAAGACATTGCAGCAGCCAGTAAAAGACCtgaaaagTTGATAGGGATGCACTACTTCTCTCCGGTGGATAAAATGCAACTGCTGGAAATCATCACCACCAATAAAACCTCCAAAGACACAACAGCGTCTGCCGTGGCTGTTGGCCTTAAACAGGGAAAGGTCATCATAGTCGTGGGGGATGGTCCAGGGTTTTACACCACTCGTTGTCTAGGGCCTATGTTAGCTGAGGCCATTCGAGTGCTGCAgGAAGGAGTTGGGCCCAAGAAACTGGATTCCCTGACAACAGGATTCGGGTTTCCTGTCGGCACGGCGACACTTGCTGACGAGGTCGGTATTGACGTGGCGGCTCATGTTGCAGAGGATCTTGGCAAGGCTTTTGGAACGCGATTCGGAGGAGGAAATGTTGAGGTCTTGAAGATGATGGTCCAAAAAGGGTTCAAAGGACGGAAGTCTGGAAAGGGTTGCTACATATACGAAGCAAAGTCGAAAGAAAAGAAGGTGAACTCGGCAGCTGAAGATATTCTCAAGAGCTTCAAGCTAACAGCACCCCCTGCTGTCTCTGGCGATGAGGACATTCAGTACAGACTCGTGTCCCGGTTCGTAAACGAGGCCATACTATGTCTACAGGAAGGCATTCTGCCCGAACCCGTGCAGGGAGACATCGGAGCCGTGTTTGGACTTGGCTTCCCACCATGTTTGGGAGGCCCTTTCCGTTTCGTGGATTCATATGGAGCTGACAAACTTGTCCAGAAAATGAAGCGCTTTGAAGAGGCTTATGGGAATCAGTTTACTCCCTGCCAGCTGCTCATTGACCACGCCAAAGACTCCAGCAAGAGGTTCCACAAGTGAAAATTAGCCACCGTTGTCATTTTCTGGCCTCACCGTTTGGGgttgtttaaaatgtcacatttacattatttacgcATCTTATCATTTGTGAGTTACAAAGCAGATATAACTTGGCCTGTACATAATTTGTCAGATTTTTACGTGATTAAAGAAAGGTTATGTAAAATCCCTTTTAAAATGAGGCTCAACCACATGATAAACTCTTTTTTGAAAGAATGTAACGGTAGCATATTTATTGCCATTATTAATAACATCACTTGCCTGTAGAAAAATTTCTGATTGATGCAGCTACATTTTTGTTCTAACCAGCGTGCCTCTGATTGTCTCCAGGTTCAGCTGAGACACAGACTTTtgcagttattatttatatgtaatttttgaATAGCATAATAGTGTGTATGTTTGCATATGATTCAGCTATAATAAACTTGCAACCCCTTGTCTAA

Function

symbol description
hadhaa Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Acts upstream of or within response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial fatty acid beta-oxidation multienzyme complex. Is expressed in several structures, including cardiovascular system; midbrain; midbrain neural tube; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Orthologous to human HADHA (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha).
hadha Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Involved in cardiolipin acyl-chain remodeling. Located in mitochondrial nucleoid. Implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009617 response to bacterium biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219127.1 True 2791 mRNA 0.48 20 21305710 21315327

Neighbor

gene id symbol gene type direction distance location
prdm1c NA coding downstream 31472 21265415 ~ 21274238 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding downstream 40743 21259533 ~ 21264967 (-)
tram2 tram2,LOC107593275,LOC107721446 coding downstream 49104 21250748 ~ 21256606 (-)
LOC122324706 NA coding downstream 137651 21154385 ~ 21168059 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding downstream 222996 21079804 ~ 21082714 (-)
rab10 rab10,LOC107593269,LOC107697207,LOC102798439 coding upstream 201452 21516779 ~ 21530446 (-)
gnpat2 si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372 coding upstream 314943 21630270 ~ 21639546 (-)
lpin1b si:ch73-21k16.1,LOC107708326,LOC107593263,LOC107685350 coding upstream 325002 21640329 ~ 21655564 (-)
fez2b si:ch211-57i17.1,LOC107708323,LOC107685354,LOC107719364,LOC107550411 coding upstream 375091 21690418 ~ 21697694 (-)
wdr26b wdr26b,LOC107697199,LOC107708322,LOC107685355 coding upstream 384079 21699406 ~ 21713062 (-)
G140637 NA non-coding downstream 46189 21257390 ~ 21259521 (-)
G140635 NA non-coding downstream 58245 21246990 ~ 21247465 (-)
G140615 NA non-coding downstream 103749 21200637 ~ 21201961 (-)
G140592 NA non-coding downstream 222151 21083294 ~ 21083559 (-)
LOC122325251 NA non-coding downstream 255734 21045825 ~ 21049976 (-)
G140683 NA non-coding upstream 116479 21431806 ~ 21432094 (-)
G140687 NA non-coding upstream 119617 21434944 ~ 21435469 (-)
G140688 NA non-coding upstream 120470 21435797 ~ 21436058 (-)
LOC122324488 NA non-coding upstream 122365 21437692 ~ 21477858 (-)
G140808 NA non-coding upstream 167291 21482618 ~ 21483300 (-)
G140616 NA other downstream 26969 21198710 ~ 21278741 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 214702 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 329955 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 647330 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 763461 20410629 ~ 20542249 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 168265 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 191917 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 417217 21732544 ~ 21741077 (-)
G140883 NA other upstream 525786 21841113 ~ 21841468 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other upstream 527105 21842432 ~ 21844633 (-)

Expression


Co-expression Network