susd6 (susd6,LOC107721312,LOC107756599,LOC107549087)


Basic Information

Item Value
gene id susd6
gene name susd6,LOC107721312,LOC107756599,LOC107549087
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15015837 ~ 15036887 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219133.1
GCGAGGCCGCTGGTGGAGCTCGCAGCTCTTTCCTACAGTAGGGAGGTACTCCGCTCTGGCCCCGCTGGCTGACGCTGCGCTCGCTCTTCTCCGTAGACGGATGATCCGATCGAAAAGGGCCGTCCGAATCCCCGAATACATTCGACCCCGACACAAACCGCGTTTACAGTAACCCTGGGATTTCCATCCGTTCGTCGCAGCTCCATGGTGACCCGATACTGATTTTTAAAGAGGAGGGCATTCACTGGTTCAGCCGGAGAGGATTCTTGCTGCACAAGCAGGGCTGAAAGATGTGCAATGGAATGGTAGCGTGTGAGACAAGAGCCTCGCTCGCTCACAGGGTGGCCGCTACATCcctgctgctcctcctcctcggCATGCTCCCCACAGGCCAAGCTTCAGGTTGTCCCAGACCCTCAGTTGTGCCTCATGGCCGTGGGAACCTGACAGAAACAAATCGCGGCTCCTTCTCTGTTGGCACGCTGCTACAATACAGCTGTGATCCAGGATACACGCTGGATGGCTACAGCATCATCACCTGCACCGTCTCAGGCCACTGGTCCTCGGATCCGCCTCGCTGTGTTAAAAATGACGTTTGTCAGCCACCAAGTGAGCCGGAGAACGGAGGATATAACTGCCACCCCTCGCCGTGCCACAGACTGACCCAGGGCACCGTGATCGAGTACTTCTGTGATGAGGGTTACATTTTGAAAGGAGGATACCAATTCCGAACCTGTGACAATGGAGAGTGGAAGTCGTCCATGCAGATCAGCTGTCACCCTGTTAAAGAAGAGGAGCAGCAGTCCCCGCTGCCAATGCCGGCTCTGTCTATTGTGGCCTCCACTGCCAGCTCTGTGGCCCTCATCCTGCTGCTGGTGgtgctgtttgttttgcttcAGCCCAAACTGAAGTCCTTCCACCACAGCCGCAGCCGGGAGCAGGGTGTGTCAGGACAGCCTACCTCCATCATGGTGGAGGGCGTTCAGGTCTCGCTGCCCTCCTACGAAGAGGCAGTGTATGGCGCAGGCGGCAGTTCTGTGCCCCCTCCTGAGTCCCGGGTTCAGATCGTGCTTTCGGAGGGCCCTCAGGCCGAGGGTTTGAACGAACCTCTTGAACAGGCTCAGGCGAGCTACAGTTTTCCCTCCACCTCGACAGCTGCGTCCTCGTGTCACGCAGAGACTGTATTGGTTCACCAGGTgccctcttcctcctctccatcctcctcttcctctccctcctGGGCTGCTGAGCAGCCTGGTGCCGCTGCACCTCTCCACCGCAGGCAGAGCAGCGAGAGCAGCGATCAGCACAGCTTGCTTTCGGTCACCTCTGCCGAAGACTATGGCGATGATATTCCATTGCTTAAGGAagcctgagtgtgtgtgcagtcaCCCCTCTCTCTGTCATCGCTGGCCAGGACTGTAACCCCTAAAGCTTCTCACCAAACACGTACCCCGCAGCCACCCGTCAGAACGCAGCAGTAAACAAGATCCGACAGCTGTCCCTCTGCCAACAAATCGCCCGCTCCTGGGGTCTACAAGCAGCAGCATGGCCCACCCCGCCCACCCCCGAGGAGTCCGGCAGCTCTCTTCACAGGAAGAACCTTCGACCGGATGACCCCTCGAAGGGTTACGCAAATGTTTAACACGTCGCAGGTGCGCTAATAATCAGTTGCACTCACCGGCTTACCTCGTCACGGCGAGGATTCACTAattacaaatgaatgcattcagATTACGTTGTGGACCTCTGCTCCGTCAATGACTGTGACCTCTTGCGAAGGGGAGAGTTCAGCAAGGATTTGCTAAGCCAGGCCCTTTTCTCTTTGATGCTGCATGTTCTgtgcaatttcttttttctgtttcgtTTTACGCGCGTACACACAGGAGCACGGCACAATCGAAGCATGACGCATAGCACCATCTCCACCATCTCCTTGCGCGAGACGCAGGGTTGAACTGATTTACATTTGTACTGTATTCAAAGACATGCTTGCCTTTTTATTTGTCGAGAAGTACCTGCGCTGTGctctgcgcgtgtgtgtgtatgtgtgcgtttcTGATGCCTGTGTGACTGTGGCCGTTGTGATTCAAAGAGGGCTGAAGTATCATCTAGGCTTCTTTTCCCCAAAATAGGAAACATTTTCAATACCTCCATTTTCTAATTGAGATGTTATTTAACTAGAATGGATGTTTCTTGTCTGTTTGTCCAAAGTGAGGAAGAGATACTTTGTGTTAGAAGCCGTGAGATTACTGTTCTCACTCTTCCTTTTAAAGCAAGTGTATCTCTCTCATGTTTATGTGTtgcacgtttaaaaaaaaaaaaaaaaaaaaaaaaagttaattttttttttttttttttttttttttttttaaatcacttatgTTCTTACTCCAAGGGAACATTTTTGAGTGTTGACTAAGTTTGTTATTGGGCTATTCTTTAAGAGCTTTGACTCGGACTTATAATATTTGGATTTGAGCAAGTTTAATTcacttttaatgaatgaaaattaaaccaagtgttttgcatttgaatgGTTTGTAAAGTCAACGGTGTGGCTAATATTTTAACGATGACTATCAAGGATAGGTTTTTCTTAATAAATCACTTGCCATGTGCTATTACAATGGTATTTGTAAGGAGATTATATCCGATATCCTGTAAGATCCTAAATATGTTGTGCATTGCATTAATGCACTGTATAGACACTTTttccaattaaatatttaattctttttagtACATATGAAAGCTCCAGAAAATGGCCTTGTTCTTCGCTCAAAAGCGTTCTTTTGGCAAAcggacatttaaaaaaaaccaatgaatcttttgtttgagtttgcgtttattttttttgtcctttccCATTGCCACCTTATGTGTATATCCCCTGTGGTTGACTCAGAATTCTGAGAATTTGTCatcatgcattaaatatatatatttttatgtgtctgACTTCGGAGAGAGAGGGCCGTTTGCCTATCTGCACATCCTCAGTTTTGTGTTCCTggcttgtttttgtaaatttgatttacattttttcatgcaAACTGAAGGCAAAATATTACTGCTGCCTTAAAACTTGtacatttcatacatttctCACTTTGTAATCGTGTTTCTTCCATCTCACTGGCTTTATGGTAATTTGTCTTCAGTTTCCTTATGGccttactttttcttttctatgcaTTAAACATTGTCTTGTTTTTTCAGACATGGGGTTTTACTCCTTTTGGAGGATGTGACATAAGATTGTCCACCCGTACTTCCCccagaagctttttttttttttttttttttttttcccagtaaacatgaaatatttctcTTGTTTATCAGTTTCATTCAAaggatgtttttaaatttaaaaacaaaggacGCAAGTAAAAATGGATACCTAGGATGTGTGTGAAACACTGTTGTACGGTGTTTTTctgcaaatgtaatttaagtTGACTCATCCACCAAGCTCCCCATCCCTATTACACTTCTTTTGATTTTCCTCTGTACATTGCTGTGGGTGTGAagatagtattttaatatttgtataaagtttaatttaattctacaGTGTGTATATAACTATTTCTAATTAAAGCTTTCATTTGAAGTGCTCAAAA
>XM_043219134.1
AGGCCGCTGGTGGAGCTCGCAGCTCTTTCCTACAGTAGGGAGGTACTCCGCTCTGGCCCCGCTGGCTGACGCTGCGCTCGCTCTTCTCCGTAGACGGATGATCCGATCGAAAAGGGCCGTCCGAATCCCCGAATACATTCGACCCCGACACAAACCGCGTTTACAGTAACCCTGGGATTTCCATCCGTTCGTCGCAGCTCCATGGTGACCCGATACTGATTTTTAAAGAGGAGGGCATTCACTGGTTCAGCCGGAGAGGATTCTTGCTGCACAAGCAGGGCTGAAAGATGTGCAATGGAATGGTAGCGTGTGAGACAAGAGCCTCGCTCGCTCACAGGGTGGCCGCTACATCcctgctgctcctcctcctcggCATGCTCCCCACAGGCCAAGCTTCAGGTTGTCCCAGACCCTCAGTTGTGCCTCATGGCCGTGGGAACCTGACAGAAACAAATCGCGGCTCCTTCTCTGTTGGCACGCTGCTACAATACAGCTGTGATCCAGGATACACGCTGGATGGCTACAGCATCATCACCTGCACCGTCTCAGGCCACTGGTCCTCGGATCCGCCTCGCTGTGTTAAAAATGACGTTTGTCAGCCACCAAGTGAGCCGGAGAACGGAGGATATAACTGCCACCCCTCGCCGTGCCACAGACTGACCCAGGGCACCGTGATCGAGTACTTCTGTGATGAGGGTTACATTTTGAAAGGAGGATACCAATTCCGAACCTGTGACAATGGAGAGTGGAAGTCGTCCATGCAGATCAGCTGTCACCCTGTTAAAGAAGAGGAGCAGCAGTCCCCGCTGCCAATGCCGGCTCTGTCTATTGTGGCCTCCACTGCCAGCTCTGTGGCCCTCATCCTGCTGCTGGTGgtgctgtttgttttgcttcAGCCCAAACTGAAGTCCTTCCACCACAGCCGCCGGGAGCAGGGTGTGTCAGGACAGCCTACCTCCATCATGGTGGAGGGCGTTCAGGTCTCGCTGCCCTCCTACGAAGAGGCAGTGTATGGCGCAGGCGGCAGTTCTGTGCCCCCTCCTGAGTCCCGGGTTCAGATCGTGCTTTCGGAGGGCCCTCAGGCCGAGGGTTTGAACGAACCTCTTGAACAGGCTCAGGCGAGCTACAGTTTTCCCTCCACCTCGACAGCTGCGTCCTCGTGTCACGCAGAGACTGTATTGGTTCACCAGGTgccctcttcctcctctccatcctcctcttcctctccctcctGGGCTGCTGAGCAGCCTGGTGCCGCTGCACCTCTCCACCGCAGGCAGAGCAGCGAGAGCAGCGATCAGCACAGCTTGCTTTCGGTCACCTCTGCCGAAGACTATGGCGATGATATTCCATTGCTTAAGGAagcctgagtgtgtgtgcagtcaCCCCTCTCTCTGTCATCGCTGGCCAGGACTGTAACCCCTAAAGCTTCTCACCAAACACGTACCCCGCAGCCACCCGTCAGAACGCAGCAGTAAACAAGATCCGACAGCTGTCCCTCTGCCAACAAATCGCCCGCTCCTGGGGTCTACAAGCAGCAGCATGGCCCACCCCGCCCACCCCCGAGGAGTCCGGCAGCTCTCTTCACAGGAAGAACCTTCGACCGGATGACCCCTCGAAGGGTTACGCAAATGTTTAACACGTCGCAGGTGCGCTAATAATCAGTTGCACTCACCGGCTTACCTCGTCACGGCGAGGATTCACTAattacaaatgaatgcattcagATTACGTTGTGGACCTCTGCTCCGTCAATGACTGTGACCTCTTGCGAAGGGGAGAGTTCAGCAAGGATTTGCTAAGCCAGGCCCTTTTCTCTTTGATGCTGCATGTTCTgtgcaatttcttttttctgtttcgtTTTACGCGCGTACACACAGGAGCACGGCACAATCGAAGCATGACGCATAGCACCATCTCCACCATCTCCTTGCGCGAGACGCAGGGTTGAACTGATTTACATTTGTACTGTATTCAAAGACATGCTTGCCTTTTTATTTGTCGAGAAGTACCTGCGCTGTGctctgcgcgtgtgtgtgtatgtgtgcgtttcTGATGCCTGTGTGACTGTGGCCGTTGTGATTCAAAGAGGGCTGAAGTATCATCTAGGCTTCTTTTCCCCAAAATAGGAAACATTTTCAATACCTCCATTTTCTAATTGAGATGTTATTTAACTAGAATGGATGTTTCTTGTCTGTTTGTCCAAAGTGAGGAAGAGATACTTTGTGTTAGAAGCCGTGAGATTACTGTTCTCACTCTTCCTTTTAAAGCAAGTGTATCTCTCTCATGTTTATGTGTtgcacgtttaaaaaaaaaaaaaaaaaaaaaaaaagttaattttttttttttttttttttttttttttttaaatcacttatgTTCTTACTCCAAGGGAACATTTTTGAGTGTTGACTAAGTTTGTTATTGGGCTATTCTTTAAGAGCTTTGACTCGGACTTATAATATTTGGATTTGAGCAAGTTTAATTcacttttaatgaatgaaaattaaaccaagtgttttgcatttgaatgGTTTGTAAAGTCAACGGTGTGGCTAATATTTTAACGATGACTATCAAGGATAGGTTTTTCTTAATAAATCACTTGCCATGTGCTATTACAATGGTATTTGTAAGGAGATTATATCCGATATCCTGTAAGATCCTAAATATGTTGTGCATTGCATTAATGCACTGTATAGACACTTTttccaattaaatatttaattctttttagtACATATGAAAGCTCCAGAAAATGGCCTTGTTCTTCGCTCAAAAGCGTTCTTTTGGCAAAcggacatttaaaaaaaaccaatgaatcttttgtttgagtttgcgtttattttttttgtcctttccCATTGCCACCTTATGTGTATATCCCCTGTGGTTGACTCAGAATTCTGAGAATTTGTCatcatgcattaaatatatatatttttatgtgtctgACTTCGGAGAGAGAGGGCCGTTTGCCTATCTGCACATCCTCAGTTTTGTGTTCCTggcttgtttttgtaaatttgatttacattttttcatgcaAACTGAAGGCAAAATATTACTGCTGCCTTAAAACTTGtacatttcatacatttctCACTTTGTAATCGTGTTTCTTCCATCTCACTGGCTTTATGGTAATTTGTCTTCAGTTTCCTTATGGccttactttttcttttctatgcaTTAAACATTGTCTTGTTTTTTCAGACATGGGGTTTTACTCCTTTTGGAGGATGTGACATAAGATTGTCCACCCGTACTTCCCccagaagctttttttttttttttttttttttttcccagtaaacatgaaatatttctcTTGTTTATCAGTTTCATTCAAaggatgtttttaaatttaaaaacaaaggacGCAAGTAAAAATGGATACCTAGGATGTGTGTGAAACACTGTTGTACGGTGTTTTTctgcaaatgtaatttaagtTGACTCATCCACCAAGCTCCCCATCCCTATTACACTTCTTTTGATTTTCCTCTGTACATTGCTGTGGGTGTGAagatagtattttaatatttgtataaagtttaatttaattctacaGTGTGTATATAACTATTTCTAATTAAAGCTTTCATTTGAAGTGCTCAAAA

Function

symbol description
susd6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD6 (sushi domain containing 6).

NR:

description
sushi domain-containing protein 6-like

GO: NA

KEGG:

id description
K23824 SUSD6; sushi domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219133.1 True 3629 mRNA 0.46 7 15015837 15036887
XM_043219134.1 False 3623 mRNA 0.46 7 15015837 15036884

Neighbor

gene id symbol gene type direction distance location
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding downstream 30981 14976262 ~ 14984856 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding downstream 44547 14907899 ~ 14971290 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding downstream 112342 14846009 ~ 14903495 (-)
wdr21 dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145 coding downstream 202335 14808533 ~ 14813502 (-)
pigh pigh,LOC107739364,LOC107602101,LOC107668214,LOC107562701,LOC107721283,LOC107721262 coding downstream 216298 14797948 ~ 14799539 (-)
thbs1b thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445 coding upstream 42087 15078974 ~ 15089573 (-)
chrm5b LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776 coding upstream 129519 15166406 ~ 15175414 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding upstream 148825 15185712 ~ 15252625 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding upstream 239220 15276107 ~ 15278071 (-)
LOC122325338 scg5,LOC107549096,LOC107721307,LOC107756590,LOC107601900,LOC107668261 coding upstream 241331 15278218 ~ 15280428 (-)
LOC122324712 NA non-coding downstream 172101 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 222128 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 436936 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 490814 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 587585 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 286685 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 294914 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 333721 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 479956 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 647289 15684176 ~ 15711053 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 568 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 12635 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 569912 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 817309 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1248013 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 805511 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 806011 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 806522 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 807467 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 953262 15990149 ~ 15993645 (-)

Expression


Co-expression Network