tram2 (tram2,LOC107593275,LOC107721446)


Basic Information

Item Value
gene id tram2
gene name tram2,LOC107593275,LOC107721446
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21250748 ~ 21256606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219167.1
TGCGCTCGCTGAAGTTTGGAGTGATTCGTGGAAGTTTTAGATTtggagaagggaaaaaaagcacaGCTGAAATTCGGGAACTTGTAAAATGGCTTTTCGCAGGAGAAACAAGAGTTATCCTTTCTTCAGTCAAGAGTTTCTCATTCAGAATCACGCGGACATTGTGTTTAGTTTggtgattttcattttgattggaCTGATGTTTGAGacAACAGCGAAAACAgccattttattcattcagccTCAGTATAACATCAGCTCCTTGACCGCagatgGAGAAGTGACTCTGTATCATTATGGATGGAAAGACTGTGCTACTGTCCTCTTCTATCTTTGTATCACCATCATTCTTCATGCAGTGGTGCAGGAATATGTGCTAGATAAAGTAAACCGGCGTCTGCACCTGTCAAAGagtaaaaacacaaagtttAATGAATCCGggcagctgtgtgtgttttacctggTGTCCAGTTTATGGAGTCTCTACGTCATCGCCACAGAGGGATACATTTTGCATCCCAGTAGCCTTTGGGAGAACTATCCTCATGTTCACCTGAGGTTTCAGGTGAAGTTCTTCTACCTCACACAGCTGGCGTACTGGTTTCACGCACTACCTGAACTTTACTTCCAGAAAGTAAGGAAGgAAGAAATCCCGCGTCAGCTGCAGTATATCGGTCTTTATCTGTTGCACATTCTGGCTGCATATCTGTTAAATTTGACGCGGGTTGGGCTGGTTTTGTTGTTTCTGCAGTATCTTTCTGAGATGGGTTTCCACCTGTCTCGACTGTTTTACTTCATTGATGAAAACCACCACAAAatGTTTGAGATGTGGTCTGTCGGATTCGTCCTGACCCGGATGATCACTCTGACTCTGATGTTCCTGGCCGTGGGCTTCGGTTTGGCTCGTTCTGAAAACCAGATGCTTGATTTGGAGACGGGAAACTTCAACACTCTTTCTATCAGGCTGCTGGTGTTGTTCGTGGTGTGTTTCACTCAGTCGTGGCTGCTCTGGAAGTTCTTCCGTTTCCAGCTGAGCCGAACGCGTGAGCTGAGACTGGAGCAGGCGGCACGGAAGAGAGCGGCCGCTAAACAACACATGCAGCGCACGCTCAAACGGGATTCAGttgGTCATCATGAGAATGGACTGATTAAAGCAGAGAACGGCACATCTCCTCGTCTCAAGAAAATCAAAGCGCCGTAAACTTCAGCCCCGTTCCAGCGCATGGCCTCCACACATCGAGGGCACAGGAACAGGAAACGGTTCATCTGCCTGCTGCTTCCTGTTTCCACATCAAGAGAAGTGCATGTGGCGTTTCTCAGAGGAAGTGACGACGACACGCTCAACGGGCTCTGGTCAACGTACTAAACTTCTCTTTCCAGTTTCAGTATTCATGTtatttcttctttgtgtttctaAACTTCACTCAGTCTTTCTTTATTAAAGCGCTGTTTTGAGGTTAGTTTGTATTTCTGTATCTGCATGTCTTGAGGTACAAAAGCGGCGACGACGGTGGCCTAGGCTTGACACTCAGCGTATTGAGATGATTTGAATCTGAGGTGTTATTCTGAGACTTCACGCATTTTGGGTTTGAAATGAAGTTACATggcaatccaaaaaaaaaaatagcaaaagaaaCAATGGGAAATCATGTTGAACAAGCATTGTAGAAGAGAAATGACCCTGAACACACAACAAATTCTGTCTTGCTTTGTACGTTTATGCAGTTTGATATTTGATTGTATATGAGAATGCTTTATAAATGTTGAACCTTTTTGAATAGTTAAa

Function

symbol description
tram2 Predicted to be involved in protein insertion into ER membrane. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane, translocation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in hatching gland; notochord; polster; and splanchnocranium. Orthologous to human TRAM2 (translocation associated membrane protein 2).

NR:

description
PREDICTED: translocating chain-associated membrane protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219167.1 True 1786 mRNA 0.44 11 21250748 21256606

Neighbor

gene id symbol gene type direction distance location
LOC122324706 NA coding downstream 82689 21154385 ~ 21168059 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding downstream 168034 21079804 ~ 21082714 (-)
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding downstream 285826 20945637 ~ 20964922 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding downstream 493014 20745202 ~ 20757734 (-)
ints9 ints9 coding downstream 532651 20706925 ~ 20718097 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 2927 21259533 ~ 21264967 (-)
prdm1c NA coding upstream 8809 21265415 ~ 21274238 (-)
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding upstream 49104 21305710 ~ 21315327 (-)
rab10 rab10,LOC107593269,LOC107697207,LOC102798439 coding upstream 260173 21516779 ~ 21530446 (-)
gnpat2 si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372 coding upstream 373664 21630270 ~ 21639546 (-)
G140635 NA non-coding downstream 3283 21246990 ~ 21247465 (-)
G140615 NA non-coding downstream 48787 21200637 ~ 21201961 (-)
G140592 NA non-coding downstream 167189 21083294 ~ 21083559 (-)
LOC122325251 NA non-coding downstream 200772 21045825 ~ 21049976 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding downstream 254067 20996366 ~ 20996681 (-)
G140637 NA non-coding upstream 784 21257390 ~ 21259521 (-)
G140683 NA non-coding upstream 175200 21431806 ~ 21432094 (-)
G140687 NA non-coding upstream 178338 21434944 ~ 21435469 (-)
G140688 NA non-coding upstream 179191 21435797 ~ 21436058 (-)
LOC122324488 NA non-coding upstream 181086 21437692 ~ 21477858 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 159740 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 274993 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 592368 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 708499 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 1187771 20061602 ~ 20062977 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 226986 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 250638 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 475938 21732544 ~ 21741077 (-)
G140883 NA other upstream 584507 21841113 ~ 21841468 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other upstream 585826 21842432 ~ 21844633 (-)

Expression


Co-expression Network