churc1 (churc1,LOC107659227,LOC107721357,LOC107555763,LOC107556164)


Basic Information

Item Value
gene id churc1
gene name churc1,LOC107659227,LOC107721357,LOC107555763,LOC107556164
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13508652 ~ 13510518 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219195.1
GAGGCACTACTCTAAAGTTCGCACAGAGAATTCACCGAAGAAGAAGACGAACACGGAAGTGTCTTGCTTCTAATCTGTACcgtatatattcattttatttgatacGAAATGTGTACTGGCTGTGTGCAGAAACAGTATCCTGACAGGGGTCATACCTGTCTGGAGAACGGTTCATATCTTATGAACTTTCTCGGCTGCGCCAACTGTCACCAGCGGGACTTTGTGCTGATCAGCGACAGGACGACGGTgaatgaagatgaagaggagatTGTCACTTACCTGCATATGTGCAAGAACTGTGATCATGTCATAGCCAGACACGAGTACACCTTCACTGTGGTGGATGACTATCAGGAATACACAATGTTGTGCATGCTGTGTGGAAAAGCAGAGGATTCCATCAGTGTGCTGCCAGACGATCCCAGACAAACAGCGCCTCTGTTCTAGAGCATTTGCCCAGACACAAGAGACAGGGAATTGACTTCTTTGTAAAGAGCATGGTTATGCATGATGAAGGGAGCCAAGACAcatgcaacattttatatacGCTTAGCACTGGAGAGCGACACGCTGTCACGATCAATCCAGAACATACAGCAGAATTCATTTtgctctttatttcttttgtttcaagGGAGGCTTTAAGGTTCGCAGCACAGCTCTGACTCATAAAGACGCGTGAATTTGAGAGTCATTCACAAACCTAATTAGGAATCGCCTGTTTATCTTGTGATCATCCTGTGTGGTTCACTCAAGAGTGTATGGAAACCCCCGTTTATGCCaaatagaataattaaaaaggtaattgctAAATTTAATCTCACAATTAATTTTCCTGAATTTTCAAAGAATTCACTCATAATTGCAATAACGTTTTGTTTTCTGCTATGCTATAAACAATAGGCACAGTAACTCTGATTTTTCAcaattcagatgtttttttttacattttgagatAAAGTTACTTTGTCTATTTTGTTCCACGGctgaaacaggcttccataagtgttatttatttccCATGTTAAATGCTTTCTCTTATCCCATCTTAATATGCACAATGTTGTTCTGCTGCAAAATATGAGTCTGCAGTAGGAATATCCTTGTTTGACTAACCAAGAAAGGTTAGGTTTGAGCGGATTAGCAGTTTGTTAACCACAGACAGGATTTTTGTTTCTATGCAGCTTTAGATACACACAAGTCAAGACTGAATTAGacgttaaaatgtttaaaatgacacacaagaaaacaaaaaagattccTGCTTGTTATTACTGATACTTACATTTAACGTAACTGTTTCACTGTATTTCCATCGTTAATGcaactaaatattttgtatgctttgtttaaataaactatGAAACGAtg

Function

symbol description
churc1 Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; fibroblast growth factor receptor signaling pathway involved in somitogenesis; and negative regulation of fibroblast growth factor receptor signaling pathway. Is expressed in several structures, including digestive system; ethmoid cartilage; forerunner cell group; keratinocyte; and mucus secreting cell. Orthologous to human CHURC1 (churchill domain containing 1).

NR:

description
Churchill protein

GO:

id name namespace
GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219195.1 True 1371 mRNA 0.39 4 13508652 13510518

Neighbor

gene id symbol gene type direction distance location
mideasa elmsan1a,LOC107555757,LOC107721359,LOC107683915,LOC107665392,LOC107737312,LOC107556160 coding downstream 16559 13482405 ~ 13492093 (-)
exoc1 exoc1,LOC107683916,LOC107721360,LOC107555758,LOC107665383,LOC107556159,LOC107737311 coding downstream 30460 13466797 ~ 13478192 (-)
chst14 chst14,LOC107721361,LOC107683987,LOC107737336,LOC107556138,LOC107555762,LOC107665414 coding downstream 42257 13462277 ~ 13466395 (-)
si:dkeyp-117h8.4 LOC107683988,LOC107555746,LOC107721277,LOC107737307,LOC107556154 coding downstream 92395 13412653 ~ 13416257 (-)
paics paics,LOC107683924,LOC107721365,LOC107665310,LOC107737306,LOC107555752,LOC107556158,LOC108415209,LOC107556155 coding downstream 100608 13397531 ~ 13408044 (-)
capn3b capn3b,LOC107659224,LOC107721354,LOC107665384,LOC107737332 coding upstream 6139 13516657 ~ 13526273 (-)
si:dkey-12h9.6 si:dkey-12h9.6,LOC107659220,LOC107737319,LOC107665359,LOC107555760,LOC107556127 coding upstream 28269 13538787 ~ 13547044 (-)
serac1 serac1,LOC107555766,LOC107737322,LOC107659155 coding upstream 38140 13548658 ~ 13555425 (-)
myct1a myct1a,LOC107737339,LOC107665338,LOC107659222,LOC107555747,LOC107556166,LOC107721271 coding upstream 45408 13555926 ~ 13559395 (-)
esr1 LOC107737325,LOC107555768,LOC107556167 coding upstream 160586 13671104 ~ 13683267 (-)
G138221 slc35f6,LOC107721386,LOC107555739,LOC107683918,LOC107737338,LOC107665330 non-coding downstream 10626 13495682 ~ 13498026 (-)
G138217 zgc:153896,LOC107721358,LOC107665343,LOC107737337,LOC107556161 non-coding downstream 29628 13478772 ~ 13479024 (-)
G138159 LOC107556152 non-coding downstream 115057 13388921 ~ 13393595 (-)
G138162 NA non-coding downstream 117309 13385970 ~ 13391343 (-)
G138158 NA non-coding downstream 124689 13379422 ~ 13383963 (-)
G138232 NA non-coding upstream 4247 13514765 ~ 13515133 (-)
G138335 foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144 non-coding upstream 320059 13830577 ~ 13832060 (-)
G138351 NA non-coding upstream 339422 13849940 ~ 13850174 (-)
G138399 LOC107711644,LOC107659205,LOC107721344,LOC107602456,LOC107665390,LOC107602691,LOC107555778 non-coding upstream 430710 13941228 ~ 13999349 (-)
G138407 NA non-coding upstream 434742 13945260 ~ 13945737 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 61264 13423958 ~ 13447388 (-)
LOC122324483 NA other downstream 244368 13260919 ~ 13264284 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other downstream 1228340 12241801 ~ 12280312 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1284382 12222810 ~ 12224270 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1289013 12218763 ~ 12219639 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other upstream 36758 13547276 ~ 13548591 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other upstream 153988 13664506 ~ 13692007 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other upstream 252817 13763335 ~ 13767824 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other upstream 683215 14193733 ~ 14198528 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 931015 14441533 ~ 14445925 (-)

Expression


Co-expression Network