ttll2 (LOC107678816,LOC107727576,LOC107743327,LOC107697071,LOC107549674,LOC107603067)


Basic Information

Item Value
gene id ttll2
gene name LOC107678816,LOC107727576,LOC107743327,LOC107697071,LOC107549674,LOC107603067
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23039822 ~ 23042379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219203.1
CACATGGCGCGCTTTTATTCAAGCGTTTCCTAGCAACGAAAGATGACCAGAGCAGAGGACACAAAAGGAGCAGCAACCTGTCTGACAGGAACTCCGTCTGTGGAGGATCTACCAGGCAACAGAGTCCGGTCAGAATTTAAAGAACTGACTTACATGATTTTTTGGAGGCACTGGGATCTTCTCTATGGCCGAAAGGGAACGCGGTTTAGCTCCTCTGGTGTTCAGATTGCACGGAAGAGCCCCGCAGGTGGTACGTGAAGTGCTGCTGGAGCGCGGCTGGGAGGAGTATGACGAAGAGGAGCGGGAGGAAGGAGACTGGAACCTCTATTGGAGAGCCTCTGGCTTCCGAAAGTCTGACTACGAAAACATCCTGCCATGGCAGAGACTGAACCACCATCCCAAATTGAGCCAGATTACGCGCAAGGACTGTCTGGCGCGACACTTGAGAAGAATGAAGATGGCTTTCGGCGCGACCCTGTACGGCTTCAGCCCTGCTGCTTTCATCCTGCCAAACGAATACGCAAAGTTTCTAGGGGTGTACACTGGGAAGCGCGTGAACGACAGAGGGAAGTCTCGCTACTGGATCTGTAAGCCAGTCGACCTTTCGAGAGGAAGAGGTATATTTCTTTTTGAGGATATCAAGGACTTAGTCTATGACTCTTCGGTGATCGTGCAGAGATACATCAGCAACCCGCTTCTCATTTCAGGCTACAAGTTCGATCTACGCATTTACGTTTGCGTAAAAAGCTTTTCTCCTCTTGTGATTTACATGCACCAGGAAGGCCTAGTGCGCTTTGCCACAGAAAAGTACACCCTCGCTTCTTTAGAGAGCCTCTACTCTCATTTGACAAACACCAGCATTAACAAGTTTGGGATGTGCTACGCCACGGACAAAGAGCGAGTGGGTCGAGGATGCAAGTGGACCATGAGCAGATTCCGTAGTTTTCTTCACAAACAGGATATCAACGAGCTTCTGCTGTGGCACGGGATCAGCAACATTGTTACGCTGACTCTGCTCGCCGCCGTTCCTTGCGCTCCCTCCAGCCCTAACTGTCTGGAGCTGCTGGGATTCGACATCCTCATCGATGCTAGCTACAAACCGTGGCTTCTAGAGGTCAACTACAGTCCTGCGCTTTCACTGGACTGCCCCGCTGATGTAAGTGTCAAGAAAGGGCTGGTCAGTGATATCATTGACCTGATGAACTACGGGATGATTGACGGTTACAGACAGAAGGGATACTGCAGGAAGAGATCGGGTAGACGGTATTTACGGCCAAAAATCTCTCAGGGGTTTTTGCTGCCTAAAACTTTACGTGCAGCTCCTTTGAGCAGGAGCGAGTCGATCTCAAGCTCTTCAAGTTCTCAAGACACTTCGGTAAATGTTGGCGGTTGTAACAACGGCGGTTGTGCCACTTGGCCATTTCACCCCGAAAAGGCTCCTCGGAAATTTGAGGAAATTAACGACGACGTGGAATCCGACGGCCTGAAACGCGCAACACTTAACAGCGCGAGGCAATCGCAGAGGAACGCGCCGTCTGCCGTATGCAAGCTACCGTCTCTTCACGTACGCAAACTCAAATCTCCAGCCGTCCCGCGGAGCAGCGCGACTCAAGACAGAGGCTTTCCTGCTTGTCGTGTAGGCGACTTCATTCTGACGTTTCCTTTTAACGAGGCTACGTGGAAAGCCTCTCAGGACCAAGCGAATGTTAAGGCTATTGTGAACGAGGTTCATAAACTCGCAAACCGACTGGCGTCTTCCCTGAATGAAAAACGGAGGACGAAGATGGAAATCGGTCAGAGCGTTGGTGTCGGGGACAAATTCGAGCCTCTGCTTTGGGGGCCAAAGGATCCACCTCTTCTCAGCAAATGCTGCTCCTTAAGTTCAGAAGtcaagtaaaatgtattttgct

Function

NR:

description
probable tubulin polyglutamylase TTLL2

GO: NA

KEGG:

id description
K16600 TTLL2; tubulin polyglutamylase TTLL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219203.1 True 1910 mRNA 0.51 2 23039822 23042379

Neighbor

gene id symbol gene type direction distance location
unc93a unc93a,LOC107678861,LOC107743326,LOC107697148 coding upstream 1782 23033699 ~ 23038040 (+)
dusp23a LOC107726750,LOC107678830 coding upstream 122542 22915316 ~ 22917280 (+)
LOC122325008 LOC107726732,LOC107678815,LOC107697073,LOC107549671,LOC107549670,LOC107697074,LOC107726733 coding upstream 125050 22907524 ~ 22914772 (+)
LOC122325009 LOC107726732,LOC107549670,LOC107726733,LOC107697073,LOC107549671,LOC107697074,LOC107553823,LOC107678815 coding upstream 133461 22900984 ~ 22906361 (+)
LOC122325007 LOC107726733,LOC107726732,LOC107726734 coding upstream 139901 22895007 ~ 22899921 (+)
gpr31 gpr31,LOC107549704,LOC107743300,LOC107697152,LOC107678862 coding downstream 7884 23050263 ~ 23053054 (+)
plg plg,LOC107678850,LOC107727632,LOC107697138,LOC107743301 coding downstream 12737 23055116 ~ 23062276 (+)
trnal-cag_35 NA coding downstream 57827 23100206 ~ 23100288 (+)
rfx6 rfx6,LOC107678847,LOC107697139,LOC107743320 coding downstream 66966 23109345 ~ 23119136 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding downstream 100528 23142907 ~ 23146976 (+)
G141121 NA non-coding upstream 116694 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 482320 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 497290 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 498495 22541118 ~ 22541327 (+)
G140933 NA non-coding upstream 938361 22101238 ~ 22101461 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 24208 23066587 ~ 23073665 (+)
LOC122324747 NA non-coding downstream 152242 23194621 ~ 23206082 (+)
G141207 NA non-coding downstream 287812 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 346113 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 528716 23571095 ~ 23571454 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 179495 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 285661 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 522139 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 563048 22471761 ~ 22476774 (+)
G140785 NA other upstream 1195121 21844146 ~ 21844701 (+)
pln NA other downstream 301336 23343715 ~ 23351655 (+)
G141475 NA other downstream 1030492 24072871 ~ 24074423 (+)
G141524 NA other downstream 1397864 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1414611 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1926501 24968880 ~ 24994837 (+)

Expression


Co-expression Network