Item | Value |
---|---|
gene id | myo6a |
gene name | myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 |
gene type | misc |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056718.1 |
NCBI id | CM032087.1 |
chromosome length | 27616869 |
location | 1840128 ~ 1876292 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
myo6a | Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within angioblast cell migration from lateral mesoderm to midline and artery morphogenesis. Predicted to be located in several cellular components, including clathrin-coated pit; filopodium; and ruffle membrane. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including endocytic vesicle; microvillus; and ruffle. Is expressed in dorsal aorta; neural tube; posterior cardinal vein; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 22; autosomal recessive nonsyndromic deafness 37; ovarian cancer; and sensorineural hearing loss. Orthologous to human MYO6 (myosin VI). |
myo6 | Enables actin filament binding activity and identical protein binding activity. Involved in several processes, including DNA damage response, signal transduction by p53 class mediator; endocytosis; and positive regulation of transcription by RNA polymerase II. Located in several cellular components, including nucleus; perinuclear region of cytoplasm; and ruffle. Part of RNA polymerase II, holoenzyme and filamentous actin. Colocalizes with clathrin-coated endocytic vesicle. Implicated in autosomal dominant nonsyndromic deafness 22; autosomal recessive nonsyndromic deafness 37; ovarian cancer; and sensorineural hearing loss. Biomarker of prostate cancer. |
description |
---|
PREDICTED: unconventional myosin-VI isoform X7 |
id | name | namespace |
---|---|---|
GO:0048844 | artery morphogenesis | biological_process |
GO:0035479 | angioblast cell migration from lateral mesoderm to midline | biological_process |
GO:0016459 | myosin complex | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0003774 | motor activity | molecular_function |
id | description |
---|---|
K10358 | MYO6; myosin VI |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043219215.1 | True | 4736 | mRNA | 0.49 | 35 | 1840128 | 1876292 |
XM_043219216.1 | False | 4706 | mRNA | 0.49 | 34 | 1840128 | 1876292 |
XM_043219217.1 | False | 4697 | mRNA | 0.49 | 34 | 1840128 | 1876292 |
XM_043219218.1 | False | 4658 | mRNA | 0.49 | 33 | 1840128 | 1876292 |
XM_043219219.1 | False | 4628 | mRNA | 0.49 | 32 | 1840128 | 1876292 |
XR_006247211.1 | False | 1344 | transcript | 0.51 | 12 | 1854262 | 1876292 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
mei4 | mei4 | coding | downstream | 20735 | 1808105 ~ 1819393 (-) |
nt5e | nt5e,LOC107660511,LOC107554926,LOC107562347,LOC107680304 | coding | downstream | 38165 | 1790036 ~ 1801963 (-) |
ankrd6b | ankrd6,ankrd6b,LOC107562345,LOC107660530,LOC107731518,LOC107554922,LOC107742996 | coding | downstream | 229338 | 1593730 ~ 1610790 (-) |
LOC122325606 | NA | coding | downstream | 340641 | 1499378 ~ 1499487 (-) |
LOC122325609 | NA | coding | downstream | 342156 | 1497862 ~ 1497972 (-) |
senp6a | senp6,LOC107660507,LOC107707326,LOC107573984,LOC107680310 | coding | upstream | 3030 | 1879322 ~ 1896773 (-) |
nrl | nrl,LOC107554929,LOC107680315,LOC107731521,LOC107707327,LOC107573986,LOC107660532 | coding | upstream | 26070 | 1902362 ~ 1907463 (-) |
kcnk2b | kcnk2,kcnk2b,LOC107554930,LOC107731508,LOC107680301,LOC107660545,LOC107707328 | coding | upstream | 58245 | 1934537 ~ 1965297 (-) |
smyd2b | smyd2b,LOC107731509,LOC107707324,LOC107574479,LOC107678788,LOC107660544,LOC107592980 | coding | upstream | 100032 | 1976324 ~ 1988216 (-) |
si:dkey-121j17.6 | LOC107660501,LOC107574480,LOC107731504 | coding | upstream | 113193 | 1989485 ~ 1992179 (-) |
G135435 | NA | non-coding | downstream | 87181 | 1752733 ~ 1752947 (-) |
G135434 | NA | non-coding | downstream | 87672 | 1752156 ~ 1752456 (-) |
G135433 | NA | non-coding | downstream | 90325 | 1749595 ~ 1749803 (-) |
G135430 | NA | non-coding | downstream | 94472 | 1745359 ~ 1745656 (-) |
G135429 | NA | non-coding | downstream | 95274 | 1744645 ~ 1744854 (-) |
G135480 | NA | non-coding | upstream | 1622 | 1877914 ~ 1878122 (-) |
G135542 | NA | non-coding | upstream | 223704 | 2099996 ~ 2100241 (-) |
G135546 | NA | non-coding | upstream | 482186 | 2358478 ~ 2358691 (-) |
G135627 | NA | non-coding | upstream | 700840 | 2577132 ~ 2577488 (-) |
G135629 | NA | non-coding | upstream | 702977 | 2579269 ~ 2579702 (-) |
pnrc1 | pnrc1,LOC107731511,LOC107660527 | other | downstream | 179592 | 1655096 ~ 1660536 (-) |
pcmt | pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 | other | downstream | 268429 | 1546487 ~ 1571699 (-) |
G135279 | NA | other | downstream | 729267 | 1110425 ~ 1110861 (-) |
G135275 | NA | other | downstream | 734310 | 1103306 ~ 1105818 (-) |
G135276 | NA | other | downstream | 737015 | 1102705 ~ 1103113 (-) |
G135527 | LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 | other | upstream | 129257 | 2005549 ~ 2013527 (-) |
G135548 | NA | other | upstream | 487761 | 2364053 ~ 2364824 (-) |
cep170bb | LOC107670249,LOC107715684,LOC107714793,LOC107550527 | other | upstream | 864260 | 2740552 ~ 2757430 (-) |
nrxn3b | nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 | other | upstream | 1761997 | 3638289 ~ 3870066 (-) |
LOC122325550 | NA | other | upstream | 2092471 | 3968763 ~ 3975258 (-) |