cgrrf1 (cgrrf1,LOC107740293,LOC107664817,LOC107712438,LOC107582104)


Basic Information

Item Value
gene id cgrrf1
gene name cgrrf1,LOC107740293,LOC107664817,LOC107712438,LOC107582104
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6254715 ~ 6257447 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219272.1
GTTTACGTTGGAGAGTCTTGCAGGGTGACAGCCCAACGCAAGGCTGCGCAGGATACGAGACCCCCGCGcgaataaaaagtgtttattataatcAGACGTCCCGACATTAATGCGCATTGTATTAATGTAACGTTTTAATAATGGCCGCGGAGTTTTTAGTGATGTTGTATGAGTATTCTCCTCTCTTTTACATTACTGTCATATCAGTATGTTTCATTATCACCGTGGCTGTTGTGCTGGGCTGGTTTGGATTTGACGTCCCGGTCATTTTACGCAGCTCGGATGAGACTGAATCTCTAACACCCGTCCCTGAGAGGAAGATGGTACGGGTGACCAATCCCTTCGCTTTGGAGCTGGACTCTGCGGCTGCTACAGTATCTGAGGGTGTGAGGTTACGGCCGTATTGTCTCGAAGACTGTGTCCTCAGCTGTTTCTGGGGCTGCGGGGTCCAGGCTCTTCAGGCGGCCCTTCAGAGTCACCAGCACGGGCTCCGGCTCCAGACTCCGGAGCTGTTTCAGGAGGCTCTGGAGCTAAGCTACCTCCACCACCACATCTTCAATATacataaagaagaaaaagaagaatacTTCACCCAGATGCCCAGAGATCTCGGGGTAGCAGATTTGGGCTTGCTCCCCCGGGATCGATACCCCTTGGTGGCTGTGCTCACGCTAGCCCATCCAGAAACCAGAGAAAGCTACAACATTGTGGCCAGCGTGACGGTCCTCCACGTTCCTGACGACAAATACAGACTCTCAGCGAGGATCCTGTTTCAGTATCTCCTCACGGCACAAGGGAATCTGTACGATCTGAAGCCTCTCTTCATGTCAGCAGACAACAGCAACTTGTGTGGAACCGCAGAGCCTTCGACTAGCGCACAAGCGGCGGAGCCACAGCCGGAAAGGCCGGGCGAGAAGGGGGAGGAGTCTGATTCAGAAGGGGAGTGGCCGGATAGCCAAGGCAGGGACTGCGTGGTGTGTCAGAACGCACCGATCAACAGAGTGCTGCTGCCGTGCAGacacgcgtgtgtgtgcgaCGGCTGCGTGTGCCACTTCCAGCACTGTCCCATCTGCCGGGCGTTCGTCTTCGAGTCTTTTGCTCTGGCTAACCAACCAGCtcgcgaggaggaggaggacgattTATCTACAGAAGACTAAACCCGTGTAAACCTAGTATTAAAAGCAAGCCCTTGCTGGAAAGGCTAAACTCGGAAAGGATCGTAGCGTCCTCAAGGTAAGAAGATGCAGGcagctgacctttgaccccg

Function

symbol description
cgrrf1 Predicted to enable metal ion binding activity. Predicted to be involved in negative regulation of cell growth. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CGRRF1 (cell growth regulator with ring finger domain 1).

NR:

description
cell growth regulator with RING finger domain protein 1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219272.1 True 1267 mRNA 0.53 6 6254715 6257447

Neighbor

gene id symbol gene type direction distance location
nid2b LOC107712413,LOC107549538,LOC107549503 coding downstream 22048 6218511 ~ 6232667 (-)
zfp36l1b zfp36l1,zfp36l1b,LOC107729081,LOC107664815,LOC107695995,LOC107712436 coding downstream 56560 6193434 ~ 6198155 (-)
crip2l zgc:101840,LOC107695994,LOC107582101,LOC107549535,LOC107685785,LOC107729083,LOC102218464 coding downstream 96106 6149450 ~ 6158609 (-)
rdh14b rdh14b,LOC107549534,LOC107729080,LOC107695993,LOC107685777,LOC107712435,LOC107582098 coding downstream 105487 6145840 ~ 6149228 (-)
syt14b syt14b,LOC107685772,LOC107712432,LOC107695988,LOC107549502 coding downstream 149199 6090684 ~ 6105516 (-)
gjd2b gjd2b,LOC107740303,LOC107582173,LOC107549543,LOC105892965,LOC107582146,LOC107712441 coding upstream 54883 6312330 ~ 6315814 (-)
actc2 zgc:86709,actc1,ACTC1,actc1a,LOC108414322,LOC105024319 coding upstream 60352 6317799 ~ 6321279 (-)
meis2b meis2b,LOC107664830,LOC107668148,LOC107582109,LOC107712444,LOC104938729,LOC105017579 coding upstream 93383 6350830 ~ 6368755 (-)
glrx5 glrx5,LOC107752683,LOC107664827,LOC107747371 coding upstream 210332 6467779 ~ 6470069 (-)
flrt2 flrt2,LOC107752686,LOC107664820,LOC107564782,LOC107701229,LOC107570088,LOC107706955 coding upstream 415783 6673230 ~ 6708654 (-)
G136440 NA non-coding downstream 7824 6246263 ~ 6246891 (-)
G136416 NA non-coding downstream 49277 6205090 ~ 6205438 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding downstream 109054 6128498 ~ 6145661 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding downstream 204082 6048968 ~ 6050633 (-)
G136368 NA non-coding downstream 394092 5859953 ~ 5860623 (-)
G136506 NA non-coding upstream 125985 6383432 ~ 6398110 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding upstream 869766 7127213 ~ 7130585 (-)
LOC122324389 NA non-coding upstream 876301 7133748 ~ 7139291 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding upstream 893943 7151390 ~ 7151754 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding upstream 895021 7152468 ~ 7251872 (-)
zpax2 NA other downstream 323593 5924066 ~ 5931122 (-)
G136357 NA other downstream 550804 5701679 ~ 5703911 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other downstream 656049 5591338 ~ 5598666 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 894646 5161206 ~ 5360069 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other downstream 1225148 5024806 ~ 5029567 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 17307 6274754 ~ 6302976 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 153515 6410962 ~ 6414013 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other upstream 175315 6432762 ~ 6451499 (-)
G136688 NA other upstream 868301 7125748 ~ 7228963 (-)
G136707 NA other upstream 1039414 7296861 ~ 7305724 (-)

Expression


Co-expression Network