smek1 (smek1,ppp4r3a,LOC107726626,LOC107555622,LOC107696138,LOC107698404,LOC107601285,LOC107726461)


Basic Information

Item Value
gene id smek1
gene name smek1,ppp4r3a,LOC107726626,LOC107555622,LOC107696138,LOC107698404,LOC107601285,LOC107726461
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17414467 ~ 17424811 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219275.1
ACAGGAAACCCCGTAGCGGCTTTCTGAGGGGACCCAAGATGGCCGAATCTTCACAGTGGGGCTAATAATTACTTTTCGTCAAGACGCTGCTATTTCATGGTGCTCGACTGTCGCGCTGGCCATTCGCCGTCCCGGAAAGTGAAACGAGCGAGTCTATTCGATTAGTTATATCGGGGAATGTTTATCTCTGTGTGAAGAGACTGGCTGGTCCATCCGCGGCCCTTAGCCAGAATATGGCGGAATACTTGGAGAAAATATAGCTTAGCTTATTATGAACGCGCCGCTTTATACACGAGCCTTCCCGCCTTTTCACCGACCGCTCGCAAGTATAATGATCAAATAGCGTTATCGGTACGTCTTTGGAGTCCATTCGCGCGCGTTTCCAACGTTTCTGGGTTAAAATGACTCGCGCGAGGAGATAGCCTGCTAGCTGAGGCGCTAGCTACGCTAACCCAGTTTGACTGAATTAGTCGGAGCGTTAGCATAGCCTAGCTAGCTTAAAGTAAAGGGGCACGAAGGAAAATAAACTCATTCTACGTTCGTGCTCTGGCTGCATGTTTTAAACTAATTTCTCACTGTCTCACGTCCTTTAGAATCGGAGGAGTGTTTTTTCGTCGTTCCgttcataaaaagtaaaaaaaatatcgaGTATGTTGTGGAGAGTCTCGGCTGCACACAGCAGCTAGCTGACCATCGCTAGACTGGTCAGAATAATTCTTCTGGACTGCATAAGTTTACTGTGATAGATCCCACAACAGCATACTGCATCAGATTCGCGACAGCTTGCCAGTGAATGCCATATATTTCAGCTTGAAGTTGACAGCAGATTCTGTTGCACCTTGCAAGCCGCCGAGGACGTTGAGATTTACTGAATCAAGGGCAAAAGCCTACTTGAGAGTTACTTGCAAGGATGACTGACACTCGTAGACGAGTAAAAGTGTACACTCTGAATGAGGACCGCCAGTGGGATGATCGGGGGACGGGACATGTGTCATCCGCCTACGTGGAGAGACTGAAAGGCATGTCTCTCCTGGTGCGCGCCGAAAGTGATGGGTCACTGCTGCTGGAGTCCAAAATCAACCCTAACACCGCCTATCAGAAACAGCAGGACACATTGATAGTATGGTCCGAGGCTGAAAACTATGACCTGGCCCTCAGCTTCCAGGAAAAGGCTGGTTGTGATGAAATCTGGGAAAAAATATGTCAGGTCCAGGGAAAGGACCCCTCTGTAGACATCACCCAGGAGCTGATAGATGAGTCTGAAGAGGAGCGCTTTGATGACATGTCCTCTCCTGGTCTCGAACTTCCACCATGTGAGCTCTCCCGGCTGGAGGAAGTGGCCGAGCTGGTGGCGTCATCCTTACCTTCTCCGTTAAGGAGGGAAAAACTGGCCCTGGCACTGGAGAACGAGGGCTACATCCGCAAACTGCTGGAGCTTTTCCGAGTGTGCGAGGACTTGGAGAACCGAGAAGGGCTGCATCACCTCTACGACATCATCAAAGgcattttcctcctcaaccgCACAGCACTCTTCGAAGTCATGTTCTCTGAAGAATGCATCATGGATGTGATCGGATGTCTGGAGTTCGATCCATCGCTACCACAACCACGGCGGCATCGAGAGTTCCTCACCACCACGGCGCGGTTTAAAGAGGTCATTCCCATTTCAGATCCGGAGCTGCGGCAGAAGATTCACCAGACGTACCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACCCCCTCTGTCTTTGAAGAAAACATGCTCTCCACCCTGCACTCCTTCATATTCTTCAACAAAGTAGAGATTGTTGGCATGCTGCAGgacGATGAGAAGTTTTTGACTGAGCTCTTTGCACAGCTAACTGATGAAGCCACAGATGACGATAAACGGCATGAGCTGGTCAATTTCCTGAAGGAGTTCTGTGCGTTCTCACAAACGTTACAACCACAGAACAGAGACGCATTCTTCAAAACGCTGTCCAATATGGGTATCCTGCCAGCGTTGGAAGTTATTCTTGGCATGGATGATGTTCAGGTGCGTGGAGCAGCCACTGATATCTTCTCTTACCTGGTGGAGTACAACCCCTCCATGGTTCGAGAGTTTGTTATGCAGGAGTCTCAGCAAAATGACGATGACATTTTGTTGATAAATCTGATCATTGAGCATATGATCTGTGACACGGATCCAGAGTTGGGTGGAGCCGTACAGCTAATGGGGTTGCTCAGGACACTAGTGGACCCAGAGAACATGCTGGCAACTGCTAAtAAAACCGAGAAGACAGAGTTCTTGAGTTTCTTCTATAAACATTGCATGCATGTGCTCTCTGCTCCACTTCTTGCCAACACCACAGAAGAAAAACCCAGCAAAGATGATTTCCAGACGTGTCAGCTGCTGGCTCTGATCGTAGAGCTGCTCACTTTCTGCGTGGAGCATCACACGTATCACATAAAGAACTACATCATCAACAAAGACATCCTCCGCAGAGTACTGGTGCTCACTGCATCTCAACATGCTTTCTTAGCCTTATGTGCTTTGCGTTTCATGAGGAAAATCATTGGGCTGAAGGATGAGTTTTATAACAGATACATAATGAGGAACTTCCTATTTGAGCCAGTGGTCAAAGCTTTTCTCAACAATGGATCCAGATACAACCTCATCAACTCAGCCATTATAGAGATGTTTGAGTATGTTAGAGTGGAGGATGTGAAGTCCCTGACGGCTCATATTATAGAGAACTACTGGAAGGCCCTGGAGGACGTAGACTATGTTCAGACATTTAAGGGACTGAAGCTTCGATATgaacagcagagagaaagacaggacAACCCTAAACTTGACAGTATGCGGTCGATTCTGAGAAATCATCGTTTTCGCCGGGATGCGCGGACGCTGGAAGATGAAGAGGAGATGTGGTTTAACACAGACGAGGAAGACCTGGAGGACGGTGAAGCTGTGGTGCCGCCCTCAGATAAGATGAAGAGTGATGAGGACCTGATGGATCCTATCAGCAAGTTCATGGAGAGGAAGAAACGTACGTTACCGCTACACGAAGTGAAAGACTCAGAAGAGAAGGAGGTGCTGACAGGGAAGGCGAGCCTCTCAGGACGACAGAGCCCCAGTTTTAAACTCTCCTTCTCCAGCTCCCCAAAGCCCAGTCTGTCCTCTCCTCCAACCGCATCCCTCCACCCTGGTTCGCCTGGTTCTCCAAGTTCGCCCGGGACAGGAGCCCGGAGCTCTCCCCCTACGGCAGCTGTCACCACTAAGGGAGGTCTGGTGGGTTTGGTGGACTACCCCGACGACGACGAAGAGGACGAGGATGAGGAAGACGCAGAGAGTAAAGAAGAAAGTCCTCCGCTGTCAAAGAAGTCCAAGCTGAGCTCCTAAAGCACTCCCTCGTCAATCAGCACAGTCATGCTCAAAGGGAGCTTCATCCAGAGACTATTGCAGCGCTCAGCCTAGAActcaaaactgaaacaaaatgaatgaatacacaAATGAATGGATAAATGAACGAATGCAGCCCCCCGCAGGAGTCCAAGGGGTGCCATGTGAGGAACAGAGAAAGGGAGAGCAAGAGAGGGAGAAGATAAGGTCACGGAGCGAAAAGGTGAATGTCTCCACGTGGAGTTTGTCCAAGTGCCAATCtgcaagaaagagagagagactcgtGAAACGGATGGAGAGATCGAAGACGAGATGAAACTGTGGTctggacaaaaaaataacaaaaatggatttaataAGACATCAATTTCGACAAAGCTAAAAGTACTgggggttaaaaaaaacaacaaaaaaagacctCACACAGTCAGTCACTCGCAGACACTCAAACTGTTGCCCCACAGAGCGTCCCAGGCTTGGACCAGGACACACTGCCCCCCCTCTCAGGGAAGGACCTCACATGACCCGAACTGGGCCAGCCAATCCACAACCACCACTCACCTTTGCTGACTCCATctccatttctttctctcctttctctcaaccatttttttctgttgctcttctttctttcttttttttttttcccccccttctcgattctatttttttgtttttcttttttgtttgagtTTCTAGGGCCAGACGGGACACTAGAGAGCAAAGAAGTCTGGGTCATCATTGTTTAAGATGTCACCGTTGTTCTCGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCAGTTCCCTcctttttcttattctgttgtTCTCCtctctcatttttttaaatgacataagAGACCTGCCTTTAAATGTTCAGGACGTTTTCAGCCGCACTTGAACAGGTTTTTAAAACCTCAGTGGGGGGAGATAGTTTTACCCTTTTTTTGCCCTTCAAAACTGCAGATTTTTTGGAAAATTTGTAAGCCCGTCTTGATTAAAGATTGAGTGGAACTCTAGATGTGATCGATTTTTGTCAtatcttcattttcttttcttttacatgaGTGTACTCTTAGTTGTTCGGTATATTTGGGACCATTAAAAAGATCTTTGCTGTAGTAGATCTCTCACGGTTGTGCTGGTTCCCTGTATCATGTCAACTGTGCTgatattttgtcttttgaaatGGGATTTCATCACTGAAATGATCCTCCTGTCTGCTCGTCTGAATACGTCAGTGGAAAGTCCTGCCACCTCTGACGGAGGCTTTCTAAACAACCTGCACACAATTAAAgataagtttttattttctgaaa
>XM_043219276.1
CAGGAAACCCCGTAGCGGCTTTCTGAGGGGACCCAAGATGGCCGAATCTTCACAGTGGGGCTAATAATTACTTTTCGTCAAGACGCTGCTATTTCATGGTGCTCGACTGTCGCGCTGGCCATTCGCCGTCCCGGAAAGTGAAACGAGCGAGTCTATTCGATTAGTTATATCGGGGAATGTTTATCTCTGTGTGAAGAGACTGGCTGGTCCATCCGCGGCCCTTAGCCAGAATATGGCGGAATACTTGGAGAAAATATAGCTTAGCTTATTATGAACGCGCCGCTTTATACACGAGCCTTCCCGCCTTTTCACCGACCGCTCGCAAGTATAATGATCAAATAGCGTTATCGGTACGTCTTTGGAGTCCATTCGCGCGCGTTTCCAACGTTTCTGGGTTAAAATGACTCGCGCGAGGAGATAGCCTGCTAGCTGAGGCGCTAGCTACGCTAACCCAGTTTGACTGAATTAGTCGGAGCGTTAGCATAGCCTAGCTAGCTTAAAGTAAAGGGGCACGAAGGAAAATAAACTCATTCTACGTTCGTGCTCTGGCTGCATGTTTTAAACTAATTTCTCACTGTCTCACGTCCTTTAGAATCGGAGGAGTGTTTTTTCGTCGTTCCgttcataaaaagtaaaaaaaatatcgaGTATGTTGTGGAGAGTCTCGGCTGCACACAGCAGCTAGCTGACCATCGCTAGACTGGTCAGAATAATTCTTCTGGACTGCATAAGTTTACTGTGATAGATCCCACAACAGCATACTGCATCAGATTCGCGACAGCTTGCCAGTGAATGCCATATATTTCAGCTTGAAGTTGACAGCAGATTCTGTTGCACCTTGCAAGCCGCCGAGGACGTTGAGATTTACTGAATCAAGGGCAAAAGCCTACTTGAGAGTTACTTGCAAGGATGACTGACACTCGTAGACGAGTAAAAGTGTACACTCTGAATGAGGACCGCCAGTGGGATGATCGGGGGACGGGACATGTGTCATCCGCCTACGTGGAGAGACTGAAAGGCATGTCTCTCCTGGTGCGCGCCGAAAGTGATGGGTCACTGCTGCTGGAGTCCAAAATCAACCCTAACACCGCCTATCAGAAACAGCAGGACACATTGATAGTATGGTCCGAGGCTGAAAACTATGACCTGGCCCTCAGCTTCCAGGAAAAGGCTGGTTGTGATGAAATCTGGGAAAAAATATGTCAGGTCCAGGGAAAGGACCCCTCTGTAGACATCACCCAGGAGCTGATAGATGAGTCTGAAGAGGAGCGCTTTGATGACATGTCCTCTCCTGGTCTCGAACTTCCACCATGTGAGCTCTCCCGGCTGGAGGAAGTGGCCGAGCTGGTGGCGTCATCCTTACCTTCTCCGTTAAGGAGGGAAAAACTGGCCCTGGCACTGGAGAACGAGGGCTACATCCGCAAACTGCTGGAGCTTTTCCGAGTGTGCGAGGACTTGGAGAACCGAGAAGGGCTGCATCACCTCTACGACATCATCAAAGgcattttcctcctcaaccgCACAGCACTCTTCGAAGTCATGTTCTCTGAAGAATGCATCATGGATGTGATCGGATGTCTGGAGTTCGATCCATCGCTACCACAACCACGGCGGCATCGAGAGTTCCTCACCACCACGGCGCGGTTTAAAGAGGTCATTCCCATTTCAGATCCGGAGCTGCGGCAGAAGATTCACCAGACGTACCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACCCCCTCTGTCTTTGAAGAAAACATGCTCTCCACCCTGCACTCCTTCATATTCTTCAACAAAGTAGAGATTGTTGGCATGCTGCAGgacGATGAGAAGTTTTTGACTGAGCTCTTTGCACAGCTAACTGATGAAGCCACAGATGACGATAAACGGCATGAGCTGGTCAATTTCCTGAAGGAGTTCTGTGCGTTCTCACAAACGTTACAACCACAGAACAGAGACGCATTCTTCAAAACGCTGTCCAATATGGGTATCCTGCCAGCGTTGGAAGTTATTCTTGGCATGGATGATGTTCAGGTGCGTGGAGCAGCCACTGATATCTTCTCTTACCTGGTGGAGTACAACCCCTCCATGGTTCGAGAGTTTGTTATGCAGGAGTCTCAGCAAAATGACGATGACATTTTGTTGATAAATCTGATCATTGAGCATATGATCTGTGACACGGATCCAGAGTTGGGTGGAGCCGTACAGCTAATGGGGTTGCTCAGGACACTAGTGGACCCAGAGAACATGCTGGCAACTGCTAAtAAAACCGAGAAGACAGAGTTCTTGAGTTTCTTCTATAAACATTGCATGCATGTGCTCTCTGCTCCACTTCTTGCCAACACCACAGAAGAAAAACCCAGCAAAGATGATTTCCAGACGTGTCAGCTGCTGGCTCTGATCGTAGAGCTGCTCACTTTCTGCGTGGAGCATCACACGTATCACATAAAGAACTACATCATCAACAAAGACATCCTCCGCAGAGTACTGGTGCTCACTGCATCTCAACATGCTTTCTTAGCCTTATGTGCTTTGCGTTTCATGAGGAAAATCATTGGGCTGAAGGATGAGTTTTATAACAGATACATAATGAGGAACTTCCTATTTGAGCCAGTGGTCAAAGCTTTTCTCAACAATGGATCCAGATACAACCTCATCAACTCAGCCATTATAGAGATGTTTGAGTATGTTAGAGTGGAGGATGTGAAGTCCCTGACGGCTCATATTATAGAGAACTACTGGAAGGCCCTGGAGGACGTAGACTATGTTCAGACATTTAAGGGACTGAAGCTTCGATATgaacagcagagagaaagacaggacAACCCTAAACTTGACAGTATGCGGTCGATTCTGAGAAATCATCGTTTTCGCCGGGATGCGCGGACGCTGGAAGATGAAGAGGAGATGTGGTTTAACACAGACGAGGAAGACCTGGAGGACGGTGAAGCTGTGGTGCCGCCCTCAGATAAGATGAAGAGTGATGAGGACCTGATGGATCCTATCAGCAAGTTCATGGAGAGGAAGAAACTGAAAGACTCAGAAGAGAAGGAGGTGCTGACAGGGAAGGCGAGCCTCTCAGGACGACAGAGCCCCAGTTTTAAACTCTCCTTCTCCAGCTCCCCAAAGCCCAGTCTGTCCTCTCCTCCAACCGCATCCCTCCACCCTGGTTCGCCTGGTTCTCCAAGTTCGCCCGGGACAGGAGCCCGGAGCTCTCCCCCTACGGCAGCTGTCACCACTAAGGGAGGTCTGGTGGGTTTGGTGGACTACCCCGACGACGACGAAGAGGACGAGGATGAGGAAGACGCAGAGAGTAAAGAAGAAAGTCCTCCGCTGTCAAAGAAGTCCAAGCTGAGCTCCTAAAGCACTCCCTCGTCAATCAGCACAGTCATGCTCAAAGGGAGCTTCATCCAGAGACTATTGCAGCGCTCAGCCTAGAActcaaaactgaaacaaaatgaatgaatacacaAATGAATGGATAAATGAACGAATGCAGCCCCCCGCAGGAGTCCAAGGGGTGCCATGTGAGGAACAGAGAAAGGGAGAGCAAGAGAGGGAGAAGATAAGGTCACGGAGCGAAAAGGTGAATGTCTCCACGTGGAGTTTGTCCAAGTGCCAATCtgcaagaaagagagagagactcgtGAAACGGATGGAGAGATCGAAGACGAGATGAAACTGTGGTctggacaaaaaaataacaaaaatggatttaataAGACATCAATTTCGACAAAGCTAAAAGTACTgggggttaaaaaaaacaacaaaaaaagacctCACACAGTCAGTCACTCGCAGACACTCAAACTGTTGCCCCACAGAGCGTCCCAGGCTTGGACCAGGACACACTGCCCCCCCTCTCAGGGAAGGACCTCACATGACCCGAACTGGGCCAGCCAATCCACAACCACCACTCACCTTTGCTGACTCCATctccatttctttctctcctttctctcaaccatttttttctgttgctcttctttctttcttttttttttttcccccccttctcgattctatttttttgtttttcttttttgtttgagtTTCTAGGGCCAGACGGGACACTAGAGAGCAAAGAAGTCTGGGTCATCATTGTTTAAGATGTCACCGTTGTTCTCGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCAGTTCCCTcctttttcttattctgttgtTCTCCtctctcatttttttaaatgacataagAGACCTGCCTTTAAATGTTCAGGACGTTTTCAGCCGCACTTGAACAGGTTTTTAAAACCTCAGTGGGGGGAGATAGTTTTACCCTTTTTTTGCCCTTCAAAACTGCAGATTTTTTGGAAAATTTGTAAGCCCGTCTTGATTAAAGATTGAGTGGAACTCTA

Function

symbol description
smek1 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).
ppp4r3a Predicted to act upstream of or within positive regulation of gluconeogenesis and protein dephosphorylation. Located in cytosol and nuclear speck.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X4

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219275.1 True 4712 mRNA 0.47 15 17414467 17424811
XM_043219276.1 False 4390 mRNA 0.48 15 17414767 17424810

Neighbor

gene id symbol gene type direction distance location
nbas nbas,LOC107602494,LOC108439588 coding downstream 127575 17152343 ~ 17286892 (-)
nr2e1 nr2e1,LOC107602776,LOC107726424,LOC107726614,LOC107601200 coding downstream 422664 16984344 ~ 16991803 (-)
afg1lb lace1b,LOC107679503,LOC107726636,LOC107601203,LOC107726402 coding downstream 444426 16949429 ~ 16970041 (-)
foxo3b foxo3b,LOC107679488,LOC107601202,LOC107726619,LOC107601425,LOC107726429,LOC107696126 coding downstream 467289 16921638 ~ 16947178 (-)
armc2 armc2,LOC107679492,LOC107601205,LOC107696124,LOC107726616,LOC107726428,LOC107601411 coding downstream 502535 16896561 ~ 16911932 (-)
paplnb LOC107698340,LOC107555612 coding upstream 3695 17428506 ~ 17440011 (-)
LOC122325537 LOC107698338,LOC107555613,LOC107726610 coding upstream 28231 17453042 ~ 17455437 (-)
rock2b LOC107555625,LOC107698402,LOC107696174,LOC107726463,LOC107726633 coding upstream 30926 17455737 ~ 17481534 (-)
fam102bb fam102bb,fam102b,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 74668 17499479 ~ 17515480 (-)
atf6 atf6,LOC107555632,LOC107698395,LOC107710557,LOC107726471,LOC107601246,LOC107696152 coding upstream 98807 17523618 ~ 17554947 (-)
LOC122324490 NA non-coding downstream 4972 17396342 ~ 17409495 (-)
G139323 NA non-coding downstream 18469 17394864 ~ 17395998 (-)
G139317 NA non-coding downstream 78147 17336007 ~ 17336320 (-)
G139302 NA non-coding downstream 288557 17125437 ~ 17125910 (-)
G139301 NA non-coding downstream 289219 17124823 ~ 17125248 (-)
LOC122324574 NA non-coding upstream 131044 17555855 ~ 17559470 (-)
G139386 NA non-coding upstream 190337 17615148 ~ 17615699 (-)
G139387 NA non-coding upstream 190982 17615793 ~ 17616508 (-)
G139565 NA non-coding upstream 364387 17789198 ~ 17794072 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding upstream 370673 17795484 ~ 17799866 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 952251 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1047668 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1309740 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 1420822 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 1569893 15844354 ~ 15844574 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 376591 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 918652 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 981216 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1829923 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1836655 19261466 ~ 19262952 (-)

Expression


Co-expression Network