scyl3 (scyl3,LOC107698387,LOC107726436,LOC107599096,LOC107732421,LOC107553510,LOC107696147)


Basic Information

Item Value
gene id scyl3
gene name scyl3,LOC107698387,LOC107726436,LOC107599096,LOC107732421,LOC107553510,LOC107696147
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17629431 ~ 17635856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219323.1
AGGAAGTTGTGCATCGTGCCATAATCGTTGCGGTCTGTCAAATCGCCTGATTTGTTGtagagaaaatgcatttaaagtgtttGTCTGCGGCGCAAAGACTTAGTCGAAGTTAACGGAAAGCAAACGCTGAGTTTTTTTTCGCAATAATGGTGGCTGCTGGAAAGGAAAACTGGTTTTCTTAGGCAATTCGCTTCCTGCGAGGTGACACCGCCATACAGTGTGATAGGCAGACCACACCGCCTCAGTGTAAGGATGGGTGCTGagagcagtgccctgccaagcTGTGTGCTGGAAGAGCCATTGCTGACACTGCCGTCTGGTCTTACCATGTACTCTGCCCTCCTCCGGGATGGCAAGCCTGCCTCCGTCTTTGTGCATAAGCAAGACAATGAAGATAAAGTCAATAAAGCTGCCAAGCACTTGAAGACATTAAGGCACCCATGTCTTCTTCGCTTCCTGTCATGCTCAGTGCAGGATGGAGGTATACATTTAGTGACTGAACCAGTTCAACCATTAAAACGGCTGCTAGACAATCTTACTCCAGAGGAGATCTGCGCAGGCCTCTATGACCTGCTGCAAGCACTAGTCTTTCTACATGATAGGGGCAAATCCAGTCACAACAATGTGTGCACATCCTCGGTGTTTGTCAGTGAAGATGGTCATTGGAAGCTTGGGGGGATGGAAACTGTTTGCAAGTTTTCAGAGGCAACCCCAGAGTTTCTCAAAAGTATCCAAAATGTAAGAGAAAATTGTGCTATTCCTCCTGAGGAGAAGcttGAAGGATTCAAAACTCTTCCCGACAAGCACGCCCACTCCCGAGACGCTTTTTCATTCGGGGTGATGGTGGAGGCCCTTCTTCCACTTCTGACGGGACATGTCTCAGATGACTTGTTGGAGAGTCTAAAGAACATGCTGCAGGCCAGCCTCTTGACCCCTGACCCCATGTCTCGCCCATCTCTCAGCAGTTTACTGACTCACAAGTTCTTCAGAAATGACTTCTTGGATATCATGAATTTTCTGAAGAGTTTGACACTAAAAAATGAAGAGGAGAAGAATGAATTCTTCAAGTTTCTCTTGGACCGAGTTCAGAACCTCCCAGAGGAGTTAATTGCTACACGTCTGGCTCCTAAACTGCTCAATTCTTTGGTGTTTGCTGAGCCCATGGCCGTCAAAAGCTTCCTTCCGCACCTCTTACGGCCCAAGCAAGACTCGAGTGTGAGCACTGGCGAGGAAtgtcttctgtctctgtctttgtaTCGGAGATACGTGGTTCCTCAGCTCCTTAAGCTCTATAAGGTGAACGAGGAGCATGTCAGGATCGTGCTTCTCTCCCATATTCATATCTATGCTGAGTTCTTTCCTCACGAAGAACTGAAAAATCATATTCTTCCTCAGGTTTTGCTGGGAATGAGAGATACAAATGACTCGCTCGTCGCTATGACACTACAGAGTTTAGCTGTGCTTGTCCCGCTGCTAGGAGCCCAAGTGGTTGTTGGTGGGGAGAGGACCAAAGTCTTTAAACGGACTACACCAAACTTCACAAAGTCCACAGAGGTCACCCCAGAGACATCGCCTGTGCATATTGTTGGGCCATCACATCCCCATGTCTCTCAACCACCAAAGGTCCTGAATCTGTTTCCTAAGGGCTCAGAGGacaaaaaggtgtttttagaaaatatgtacTCCTTCCAAGCAACTGAAAAGCCCACCGGCCAGCACACCACAGCAGAGAGAGCAGTATTTAGCAGCGAGATGTCGTTCCCGTTGAATGGGTACAGAATGGGCACACAAGCTGCAGACAACACAAAAACTAACGGAGCAGTGAGATCAGACGAAGACTGGCCTAACTGGAGTGACACAGAGGAAGCAGAAAAAGACAAGACAAAGTCAGTCCAGATTAGCATACGGTCAGCAGATGTCCCTGGTCAGAGCAACTCCGCTGACAATAAGGATGAAAGTGAGGAACCCTGGGATGATTTTGAGGACTCAGAAGTGACCTCAGACCACTCACCCTCGACTCCTTTACCAGTGTCTGTACCAAAGACATCAACAGAAAGCAAGGTGTTACCTCCATCTGAATGTAGCGCAGGATCTTCAAGGCACTCCAAAGCACTCAAACTGAACTCTAGTGTCAAAAGCGTCCAAGATCAAAACCATGCCTCATCTTGGGACACCGGCTGGAACCAGGCAACTGACACCCTCAAACCCAGCAAAACAAGTTTAGCATTAGAGCCCAAGCCAAAAAGCACAATCAAGAGCTCTGAAGTTGGGTGTCTCGGGGAGGAGTTCACAATTGCAGTCAAGAAGAAGCCAGAGCTAGATCCAGAACTAGACTTCTTTGCAGATATGGTCCCAGATATAAAGCTGTCTTCTTCATCTCTTCTGCTCCCTGTGGAGAGCTCGGTCGGAGAACCCATCAGGGGACACGCATCGGACCCATCAATAGATAAACTGAGCCTCACTACAAAGTTTGCCGCAGCTGACTTGACTGAGACGGAGGCAGAAGGATGGGGTGACGACCTCAACTGGGAAGATGAGAACGTCTGGTGATCAGTGCGTTCCCCTACAGAAAGCCATATGAGAGAGATTACAATACAAGAACACTGTTACATATGCCATCATGATATTATCACTAAATATCAACATAAAAATTTAGTAACTACCATTTAAGAGAGTAGTGTGTATTTTAAGATTCCCGCACCCAGTCCAATGAGATAATCAATCTACTATCACCATAGAAATGGATCGGctacagaaaaatgttttgtcttgttGAGCTTTTTCAAGATGGCATTATGGACCTAAACATGCCAAATCCTTCAGTAGTGTTTCACTGAGGAAGAGTACATAACCTGGAAATACATCCACTTCAAatgtcagtttttatttgtgccATACAGCTTATTTTTTGTTCAATGAGCCTTAGAGGACAGACAGCCTCAACTTGAGAAGAAATATATAGACtctaatttgtgtttattagaTTGGGTGAGAGCCCgacataatttatttgtattatcagCTGCTGactaaataaaatggttttatgGTA

Function

symbol description
scyl3 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SCYL3 (SCY1 like pseudokinase 3).

NR:

description
protein-associating with the carboxyl-terminal domain of ezrin isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17542 SCYL3; SCY1-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219323.1 True 3052 mRNA 0.46 14 17629431 17635856

Neighbor

gene id symbol gene type direction distance location
LOC122324568 NA coding downstream 20486 17603658 ~ 17608945 (-)
LOC122324572 NA coding downstream 27006 17597393 ~ 17602425 (-)
LOC122324570 LOC107579823 coding downstream 33445 17586384 ~ 17595986 (-)
atf6 atf6,LOC107555632,LOC107698395,LOC107710557,LOC107726471,LOC107601246,LOC107696152 coding downstream 74484 17523618 ~ 17554947 (-)
fam102bb fam102bb,fam102b,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 113951 17499479 ~ 17515480 (-)
tprb LOC107732389,LOC107553507,LOC107696139,LOC107599094 coding upstream 9122 17644978 ~ 17662064 (-)
pdcb pdcb,LOC107553506,LOC107698383,LOC107732392,LOC107726497,LOC107696164,LOC107599093 coding upstream 27646 17663502 ~ 17666366 (-)
ptgs2b ptgs2b,LOC107732418,LOC107698381,LOC107553505,LOC107599092,LOC107726413,LOC107696154 coding upstream 43347 17679203 ~ 17682955 (-)
hmcn1 hmcn1,LOC107732365,LOC107698379,LOC107726475,LOC107696172,LOC107553432 coding upstream 69062 17704918 ~ 17772741 (-)
kifap3a kifap3a,kifap3,LOC107726482,LOC107696146,LOC107698375,LOC107732413,LOC107553501,LOC107599114 coding upstream 207683 17843539 ~ 17861031 (-)
G139387 NA non-coding downstream 12923 17615793 ~ 17616508 (-)
G139386 NA non-coding downstream 13732 17615148 ~ 17615699 (-)
LOC122324574 NA non-coding downstream 69961 17555855 ~ 17559470 (-)
LOC122324490 NA non-coding downstream 219936 17396342 ~ 17409495 (-)
G139323 NA non-coding downstream 233433 17394864 ~ 17395998 (-)
G139565 NA non-coding upstream 153342 17789198 ~ 17794072 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding upstream 159628 17795484 ~ 17799866 (-)
G139590 NA non-coding upstream 252712 17888568 ~ 18180187 (-)
LOC122324448 NA non-coding upstream 257880 17893736 ~ 17907615 (-)
G139591 NA non-coding upstream 451356 18087212 ~ 18107403 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 201308 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1167215 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1262632 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1524704 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 1635786 15990149 ~ 15993645 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 165546 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 707607 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 770171 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1618878 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1625610 19261466 ~ 19262952 (-)

Expression


Co-expression Network