LOC122324706


Basic Information

Item Value
gene id LOC122324706
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21154385 ~ 21168059 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219327.1
CGCAGGGATCCTCAACTCTTTGGGTCCGCTGTGAATGAACTCTTCCAGACACTTCTGATCATCTGACTGGATTCTGTCACTCCGTGAGAAACACGCTTCTAAATTCATCTCCGTCCGTCGATCCAGAGGCGTTTGTTACACACACAGTGGACTTTTGTGTCGGTTTCTACGCCTGAGGAAAGATAAACGAAAGGactattttagctttattttaggTTGAAGTTAGTTTACGTCTTTTGTCATATGAAGGATATGGGCAGATGTGGAAATGTTGCGTTTTGTGCGATGGTGCTCTTCTACTGTTCTTTCattacagGTGATTATCTCTGCGTGTCGTCCGCGGAAGTGTCTTCATCAGCTCACAGTTCTGTGAAGAGGAGAAACGGCGTGACCGATGCCAACATGACCTCGACCCCCGACAGCGTTCAGACGCAGTCCCCTTCTAACATCACCAACAGCACTGAGGCCACGTCACACACAATTACAGTAATGCTGGTGAACTCATCCGCCCCGGCTGAGAACACCAGTTTCTCTGAGAACATCACAGACATTTCAAACATCTCTGAAGTGTCACCGGTGAATAACAAGACAGCAGTTTCTATGGTAAAACCTACCACACACCCGCCATCAATGGGCCACGAGCCCACAAGCAGCATCCACCTCAGTACGCTCCACCCAACATACACGAGACCCAGCACAAAGATGACAGCCAGCAGCGGTCCGGTCCGGGCCAAGACCCAAGCAGACACCCCCTCGGCTCTGAACGTCGGAGATGGCGGCAATAGCAAATCGTCCACTGACCCGCTGCTGGCTGGACTGGTGTCGGCGTTCGTCGTCGTCGCCGCTATCGTGTCGGTCCTCGTATTCCTcaagttcagaagaacaaacGAGGGCCCAGAGTTTCGCAGACTTCAGGATCTCCCCATGgatgATATGCTGGAGGACGCACCTCTCTCCATGTACAGCTACTGAACCCCTGGATGTTCATCGGACATCTTCAGAGCATCCAGCATCCTCTGATCAGAATTAAACATGCTTCACAGAGGCACAAATGCTCCTGTCGTTTCCGTTACAGGACTAAATGTAGCGTCACACTCCACTTTAGTTGTTAAATTCAGCGTGGCCGTCAGTTCCTGTTCGTCGAGTTGTTTTCTTGCACTTTACGTGGGGTTTGGGAAGGGTAGTGTGCTGCGGGGATATTTGGGAACTGTTCATGGCTGTATGTGTTCATTTGTTTCTCTGATGGTCGTGTTGTTTCTGGATCTGCTCcagctgcgtgtgtgtgtgtttgtgttatatGGTCTAATTCTAATATTaacctgctgtttttttctgatcAACATCAAAAAAGTGCTATAAATCTACTCACCCTCTGGCCACTCAACAGATTTGGAGAGATGTATCATCAGATCACTTACTCAGCAATGGATCTTACCTTACATGTTACCTGacggactggagtggtgtggattattgtgctggttttatcagctgtttggactctcattctgacggcacccattcactgcagagcatccattgctgagcaagtcACTGAATGCTGACTTTCTCTAAATCTactcagatgaagaaacaaccTATCTGCATCGTAGATGGCTAGAGGGTGAATAAACTTTcagcaaattgtatttttgggaGAAATGCTCCATCCGTGTTCAATAGAGGTTTTCGATCATCacacaaaatacttttaatctTTCTCATTCAGCAGCATGTTTACAGTAATGCACTTCTGTGGGGTACCagaataaacaacaaaatgcatttacagtacaGCCACATGACTTACATGGCACTAGTCTATAATAGTGAACTCACCTCTTCTGTGTGAAGTTTTCAAACTCCTGTAAAGCGGGTAAACCCTGTAACTTctgcactcacacacagaaTCTTCCCTAGTAAGTGCGTTATTGTAAACTGATTCGGAGACAGAAttataacatgcattaaatCTGGAACATTGCTTTAATGCTGTACAACTTAACAGCACCAGTATTGATTTCCCATTGTTCATTTCACTTCTTTCTCTGTTTAGTTACCAAGGATGTTTCCACCTGTGAGATATACCATTTTTGTCAGTCATACAGACATTCAATTCACTTCAAGCGAaaatgtggggttttttttattggttttttttaaatcatttggaAAGTCAACaaatagacaaaacaaaagcgcTGAAAATGCAACTGTCTCTTGGCTCATGATGTTGCAAAATTAAACCGTTTTCAACATAAAATCCATTGGTGTGCACTTTGAcaaacatggtaaaaaaaaaaaaacacctttagtCAACTAATAGCCataattttaatgcttttcttgtgcctgaaatgttttataaaactgaacaaaatttAGCCATAGActcaaaatcctttttttttttattgattgattgaacagTCAATAATACAGTATTTTCATCCTCGTGGTTTGTTGGCTGATGGATGTGTGATGTTTACTTTGTGTAATAACTTGTGAGAGTGCATTTAAAGTGTTTCATATTACACAAGTgttctttttataattaataaaagtctttaaaataca

Function

GO:

id name namespace
GO:0030318 melanocyte differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219327.1 True 2577 mRNA 0.43 5 21154385 21168059

Neighbor

gene id symbol gene type direction distance location
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding downstream 71671 21079804 ~ 21082714 (-)
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding downstream 189463 20945637 ~ 20964922 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding downstream 396651 20745202 ~ 20757734 (-)
ints9 ints9 coding downstream 436288 20706925 ~ 20718097 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding downstream 473564 20674997 ~ 20680821 (-)
tram2 tram2,LOC107593275,LOC107721446 coding upstream 82689 21250748 ~ 21256606 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 91474 21259533 ~ 21264967 (-)
prdm1c NA coding upstream 97356 21265415 ~ 21274238 (-)
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding upstream 137651 21305710 ~ 21315327 (-)
rab10 rab10,LOC107593269,LOC107697207,LOC102798439 coding upstream 348720 21516779 ~ 21530446 (-)
G140592 NA non-coding downstream 70826 21083294 ~ 21083559 (-)
LOC122325251 NA non-coding downstream 104409 21045825 ~ 21049976 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding downstream 157704 20996366 ~ 20996681 (-)
LOC122324961 NA non-coding downstream 158872 20992521 ~ 20995513 (-)
G140449 NA non-coding downstream 362684 20736588 ~ 20791701 (-)
G140615 NA non-coding upstream 32578 21200637 ~ 21201961 (-)
G140635 NA non-coding upstream 78931 21246990 ~ 21247465 (-)
G140637 NA non-coding upstream 89331 21257390 ~ 21259521 (-)
G140683 NA non-coding upstream 263747 21431806 ~ 21432094 (-)
G140687 NA non-coding upstream 266885 21434944 ~ 21435469 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 63377 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 178630 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 496005 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 612136 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 1091408 20061602 ~ 20062977 (-)
G140616 NA other upstream 30651 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 315533 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 339185 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 564485 21732544 ~ 21741077 (-)
G140883 NA other upstream 673054 21841113 ~ 21841468 (-)

Expression


Co-expression Network