vps18 (vps18,LOC107659178,LOC107562698,LOC107739368,LOC107602125,LOC107668247)


Basic Information

Item Value
gene id vps18
gene name vps18,LOC107659178,LOC107562698,LOC107739368,LOC107602125,LOC107668247
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14778676 ~ 14784182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219337.1
ATGTGATCACATGATACTCATCAGCTGACCGAGACAGCAACGCACACAACACAACTCGTTCTCTTAGTGTTGTCCTTATTCACTATATAAACTATAACTTACAGCTCgcttactttttattttgcatttgttttagttCCGGTATACATTAATTAGCACATACCCGAGGCGTTGCCTGTAAAAGAGCTTTTGAACTGGGTATTTAGCTCACATGCTAGCGTGTTATGGGTGGGAACAGCAGCTAGGCGTACTGTACATCTTTACGTGCAATGTGAACGCAGCCTCAGTTTTTGTCGTTCGTACTGTCGTTTTGTGAATATCTGAACATTTGCAATGGCATCTATTCTGGATCAATACGAAGATTCTCAGAACATCCGTCAACACAGCCGCGTGTCAGCGGCCAACATTGGGATAACCCATTCAGGGTTTGTGAACGTGAGGTTGGAGGAAGAGAAACCTATTTTCAACAAGCAGCGCATCGATTTTTCACCTCCCGAAAAAATCAACCACTTATCAGTGTGCAACAACCAGTTATGCATGAGTCTGGGGAAGGACACCCTGCTGAGAATTGATCTTGGAAAACCTGATCAGCCAAATCAGATTGAACTGGGAAGAAAGGATGATAGCAAAGTGCACAAACTTTTTCTAGATCCTACAGGGTCACATTTAGTCATCTGCCTAACCACAAACGAATGTGTATACCTAAACCGAAACACTCAAAAGGTCCGAAGCCTGTCACGATGGAGAGGCCACTTGATTGAAAGCATAGGATGGAACAAATTAATCGGCTCGGAGACCAACACCGGGCCGATTCTGGTCGGCACCAGCCAGGGAATCATCTTTGAAGCGGAAATCTCTGCCTCAGAGGCCACTCTGTTCAACACTAACCCAGACCAGTACTTCAGACAGGTTCACTCCCTAGAAGAGGATGGTAAACCAGCTCCGGTTTGTTGCCTTGAGGTGGAACGCGGCTTGGAATCCAAGTACTTCATTGTTGCGACCACGCGGAAACGCCTGTTCCAGTTTGTAGGAAAGCTGGCAGAGGGATCCGAGCAGCAGGGTTTCAGCTCCATCTTCGCCCAGAACCAGGATCTCCTGCCCAGCTTCCAGGAGTTTCCAGTCAACATGGGCTACAGTGAGATTACATTCTACACATCCAAATTGCGCAGTTCCCCAAAGACCTTTGCATGGATGATGGGAAATGGGGTCTTGTATGGACAGCTGGACTACGTGCGGCCTGACTCTCTACTCAGTGATGTTCAAGTGTGGGAATACACCTCAGACATCGATTTAAACTCTGTCAAGCCCATCTCCATAGTACTCACCCAGTTCCACTTTCTGCTACTGCTTCCAGACCGCGTCAAGAGCATCTGCACTCTGAACGGACAGGTAGTGCACGAAGAAAAGTTTTTTCCGGAAAAGTTTGGCTGTCTAAAAAAGATGATCAAAGATCCAATCACTGGGCTGGTGTGGATCTACACGGAGAAGGCTGTGTTTCGCTACCACATCCAGAGGGAGGCACGGGACGTTTGGCAGATGTACATGAACATGAATAAGTTTGACCTGGCTAAAGAGTACTGCAAAGACAGGCCAGAATGCCTAGACATGGTGCTGGCCAAAGAGGCGGAGCACTGCTTCCAAAACAAGCGCTACCTAGAGAGCGCCAAATGCTACGCTCTCACTCAGAATTACTTTGAGGAGATTGCACTGAAGTTCATCGAAGCCAAACAAGAGGAGGCCTTGAAAGAGTTTCTGATTAAGAAGCTGACCAACCTCAAGCTTACTGAGAAGACTCAGATCACCCTGTTGGTCACCTGGCTGACAGAACTCTATCTGAACCGGCTCGGTCAACTGGAGACCGATGACGGCAAACAACACCTCTTTCTGGAGACCCGTGAAGAGTTCCGCACCTTTCTTAAAAGCCCCAAACATAAAGACTGCTTCTACAACAATCGCAACACCATCTACGACCTGCTCGCTAGTCACGGTGACGTGGACAACATGGTGTATTTCTCAGTCATCATGCAAGATTACGAGCGTGTCATATCTCATTACTGCCAGCATGATGACTACAGTGCAGCCTTAGATGTTCTCTCCAAACACTGCAATGACAAGCTCTTTTACAAGTTCTCCCCGGTCCTCATGCAGCACATCCCAAAAAAGGTGGTCGATGCATGGATTCAAATGGGAAACCGGTTGGATCCGAAGAATCTGATCCCAGCGCTGGTGAACTACAGCCAGATGGGCAGCATGCAGCAGATAAACGAGACCATCCGGTACATGGAGTTCTGTGTGTATGAGCTGGATGTCAAAGATGAAGCCATTCACAATTACTTACTGTCGCTTTATGCCAAACACAAGCCAGATGCTTTATTGCAGTACCTCAAACAAGCAGGAACGCATGTCTCCGACATCCACTACGACTTAAAATATGCCTTGCGCCTTTGTGCTGAACATGGTTacctgcaggcctgtgttttgGTTTATAAGATTATGGAGCTGTATGAGGAAGCTGTGGATCTAGCTCTACAAGTGGATGTAGATTTGGCCAAGTCTTGCGCCGACCTTCCAGAGGATGACGAGGAGTTGAGGAAGAAACTGTGGCTGAAGATTGCTCGTCATGTGGTTCAGGAAGAGAAAGATGTCAAGAAGGCCATGAACTGTCTGTCCAGTTGCAACCTTCTTAAGATCGAGGACATCTTGCCTTTCTTTCCAGATTTTGTCACGATAGATCACTTCAAAGAGGCAATTTGCAACTCCCTTGAAGAGTACAACCAACACATCGAGGAGCTGAAGCAAGAAATGGAGGAGGCCACAGAAAGTGCCAAACGCATCCGTGAAGACATCCAGGAGATGAGGAACAAGTACGGTGTGGTAGAGTCTCAGGAAAAGTGTGCCACTTGCGACTTCCCCTTGCTCAACAGACCTTTCTATCTTTTCCTGTGTGGACACATGTTCCATTATGATTGCCTCTTACAGGAAGTCATCCCTCACCTCTCTGCCTATAAGCAGAATAAATTAGAGGAGCTTCAGAAAAAGCTGGCAGTGACCACGCAGACCACCAAATCCAGGCACAGGCCCAAAGAGGAGGATACAGTCAGCTTAGGCAAGGGCCAAGGAAGCAGAGAGCAGATCAAGTCTGACATTGATGACATCATAGCATGTGAGTGTGTCTACTGTGGTGAGCTCATGATCAAATCCATTGACAAGCCTTTCATAGATCCACAGAAGTTTGATCAAGAGATGTCCAGCTGGCTCTGAAGGACACACTTCTCCATGAGTTCATTTGAGGTCTGCACAATAATTCTGTTTTATACATTGTACATATACTGACAAATAACCATCTGTGCATTGTGAAAGTTGTACTTTATTTAGAATGTTACATGCTGAATTATTAACAATGAGTATTAACAGATATGTACTGTACAAacagccttctttgattttATGTTGCTTTCTTGGATCACTGGTcacttgaaaatgtaatatgcacttgttttcattttgcattatgaataatataaataatgtttttttttatgtatgcagcaaaaaagaataaatgattGCTATTTGACCaga

Function

symbol description
vps18 Predicted to enable protein-macromolecule adaptor activity. Acts upstream of or within several processes, including apical protein localization; endosome to pigment granule transport; and notochord cell vacuolation. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Used to study cholestasis. Orthologous to human VPS18 (VPS18 core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting-associated protein 18 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0045176 apical protein localization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007634 optokinetic behavior biological_process
GO:0043485 endosome to pigment granule transport biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0048069 eye pigmentation biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20181 VPS18, PEP3; vacuolar protein sorting-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219337.1 True 3582 mRNA 0.46 5 14778676 14784182

Neighbor

gene id symbol gene type direction distance location
ino80 LOC107562697,LOC107721325,LOC107659179,LOC107668207 coding downstream 854 14742955 ~ 14777822 (-)
syndig1l syndig1l,LOC107659181,LOC107602907,LOC107562693,LOC107668242,LOC107711667 coding downstream 175338 14579447 ~ 14603338 (-)
zgc:153157 inafm2,LOC107659157,LOC107721328,LOC107562690,LOC106952300,LOC108165849 coding downstream 229113 14546671 ~ 14549563 (-)
zbtb25 zbtb25,LOC107711665,LOC107602170,LOC107668255,LOC107721290,LOC107659158 coding downstream 245876 14528523 ~ 14532800 (-)
LOC122324587 LOC107737325,LOC107555768,LOC107556167 coding downstream 338886 14418442 ~ 14439790 (-)
pigh pigh,LOC107739364,LOC107602101,LOC107668214,LOC107562701,LOC107721283,LOC107721262 coding upstream 13766 14797948 ~ 14799539 (-)
wdr21 dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145 coding upstream 24351 14808533 ~ 14813502 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding upstream 61827 14846009 ~ 14903495 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding upstream 123717 14907899 ~ 14971290 (-)
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding upstream 192080 14976262 ~ 14984856 (-)
G138579 NA non-coding downstream 199775 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 253653 14524732 ~ 14525023 (-)
G138502 NA non-coding downstream 311262 14269723 ~ 14467414 (-)
G138537 NA non-coding downstream 350424 14426959 ~ 14428252 (-)
G138463 NA non-coding downstream 595516 14182209 ~ 14183160 (-)
G138627 NA non-coding upstream 9313 14793495 ~ 14793709 (-)
LOC122324712 NA non-coding upstream 54875 14839057 ~ 14843736 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 539390 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 547619 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 586426 15370608 ~ 15380969 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 332751 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 580148 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1010852 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 1086669 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 1230085 13547276 ~ 13548591 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 208917 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 212943 14997125 ~ 15003202 (-)
LOC122325611 NA other upstream 1058216 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 1058716 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 1059227 15843409 ~ 15843629 (-)

Expression


Co-expression Network