hsdl1 (hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127)


Basic Information

Item Value
gene id hsdl1
gene name hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23823100 ~ 23824879 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219346.1
TCCTGATTCACGTGTTGTGACAAAACCGAAGAGGAGAATCTGGTGAAATAGTCCTCGTATTAACGAACGTAGTCGAGCGCAGACTAACTCGTTGGATATAAAAGATTATTCTTTTGCCACTGCCAGTTTATTTGGACTTAACAGTCGCGCGGATTTCAGCTTATAATGGCCGCCGTTGACAGCTTCCATCTTTTGTATAGAGAAATTGCCAGATCGTGCAGTTGTTATGTGGAAACGCTGGCGCTCGTGGGTGCGTGTTACACGGCCAGCAAGGCTGTGATATTTATAAGGGACTGCTATAGCCTGATAAGGCTTCACTTCATTCCTCGTCTTGTATCCCGTAGAGATCTTAGTCAGCAATATGGACAATGGGCTCTTATATTTGACGCTTCTGAGGCAATAGCAAAAGCATATGCAGAGGAACTGGCTAGACATGGCATCTGTGTGATTCTGATCAGCAGCGACATCAATAGCGTAGCTGACACTGCCAAAGCCATTTCAGACACTTACGGGGTAGAGGCCATTTTAATCGAAGCCGATTTTAGCCAGGGCCTCTCAGCCTGCAAACCAATTAAAGATGCCGTCGGCGGTAAAGATATTGGATTCATTGTTAACAGCCTGGATGGCTCTCTGGACCCCTCTCAAGGCTTTATGGACCTCTCTGAATCTGTAGTATGGGACACTCTCAATAGAAATGTAGTAGCTGCCACTCTTGTCACCCGTCTGGTTCTGCCCAATATGGTGGACAGGGGAAAAGGAGCAGTGGTCAACATTTCTGCTGGGCGCTGCTTGTGTCCGACTTCCAGAAAGGCTGCTCTTTCCGCATCTACGGCTTTCCTTGATAGCTTCAGCCGCTCTCTGCACTACGAATACGGTCATCGAGGAGTCTTCGTGCAGAGTTTGCTGCCTTTCCGAGTCTCCTCTCAAGCGTCTGAGGGTTACAGTCCGGCTGGCTGGCTGGTTCCAAGCCCGCAGGTGTATGCCAGCCATGCTCTTTCAACTCTGGGCATCTCTCGCCGAACCACGGGATACTGGCCTCACACCATACAGtttggaCTGGTGCAGTGCATTCCAGAGTGGGTATGGATGCTGGGATCACGCGTATTCACTAGGACCGCCTGACCGGGATGACTCCTCTCCAAGACCTAGTTTTTGAAATTGATTTTGCAGAGTTTTTGACCGAACTTAAAATGACACGAgtgataaaaatgttgaaacTGAAAACCAACACCTCACCTTGTCCCTTTATCCCATATACTCCTGAGTCCTGAGTAAAATGTCTCAGCTCTTCAGTATATCTGTTtgcacaattatttattttatata

Function

symbol description
hsdl1 Located in mitochondrion. Is expressed in lens and solid lens vesicle. Orthologous to human HSDL1 (hydroxysteroid dehydrogenase like 1).

NR:

description
inactive hydroxysteroid dehydrogenase-like protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016229 steroid dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219346.1 True 1326 mRNA 0.48 4 23823100 23824879

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding upstream 502284 23312199 ~ 23320816 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding upstream 511634 23232384 ~ 23311466 (+)
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding upstream 600185 23215076 ~ 23222915 (+)
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding upstream 609053 23210790 ~ 23214047 (+)
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding upstream 630715 23164445 ~ 23192385 (+)
gja11 cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110 coding downstream 52 23824931 ~ 23829080 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding downstream 4353 23829232 ~ 23831383 (+)
gja12.1 cx28.9,LOC107717177,LOC107717184,LOC107598108,LOC107697093,LOC107602175,LOC107727580,LOC107675219 coding downstream 7439 23832318 ~ 23835853 (+)
gja13.1 cx32.2,LOC107727577,LOC107675217,LOC107602176,LOC107697126,LOC107717163,LOC107598087 coding downstream 15893 23840772 ~ 23843490 (+)
gja1b LOC107675226,LOC107602186,LOC107716890,LOC107598086,LOC107697125 coding downstream 19208 23844087 ~ 23847503 (+)
G141439 NA non-coding upstream 40380 23782508 ~ 23782720 (+)
G141436 NA non-coding upstream 51674 23771095 ~ 23771426 (+)
G141403 NA non-coding upstream 251646 23571095 ~ 23571454 (+)
G141216 NA non-coding upstream 414276 23388492 ~ 23408824 (+)
G141207 NA non-coding upstream 490734 23330191 ~ 23332366 (+)
G141464 NA non-coding downstream 122737 23947616 ~ 23948827 (+)
G141465 serinc1,LOC104938560,LOC102778905 non-coding downstream 124382 23949261 ~ 24007460 (+)
G141469 NA non-coding downstream 130015 23954894 ~ 23966589 (+)
G141466 NA non-coding downstream 179808 24004687 ~ 24086637 (+)
LOC122324430 NA non-coding downstream 197255 24022134 ~ 24032657 (+)
pln NA other upstream 471445 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 962773 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 1068939 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 1305417 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 1346326 22471761 ~ 22476774 (+)
G141475 NA other downstream 247992 24072871 ~ 24074423 (+)
G141524 NA other downstream 615364 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 632111 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1144001 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 1339102 25163981 ~ 25168421 (+)

Expression


Co-expression Network