gja11 (cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110)


Basic Information

Item Value
gene id gja11
gene name cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23824931 ~ 23829080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219347.1
atatatatatatatagttgttttaTGATTgatgatgacatttttatttactactgCTTTTTCTTTAACCCATtctttatgcacttttcatatatttagaaaaaggttttgtaaatgaattatttatttttgatttttagtaTACCGTAGATATGCATTGCATCATTGTATCGCCAGCGTTCGGTTACTGCAGTGTATCTCATTTAGTTGTTGCAACTATTATCAATAAAAAGCACTAATGTttatacaatactttttttttttttatttaaagattctGATATAGTCCTAGTTAACtgacatgcattttaatactgCGTGAAAGCGTTTGATTTATAGCGGcgtttaattgttttgtaatagGTCAAATCGACgttgctaaattattttatgatcGATAAAAGGTCCAAGATTTCTGTGTGTCGTCAGCAAGGCTGGAGTTTATACAGTCCGTTTGCCCCAGTAATGCTGACGGCAAGTATTATCTTTAAAGTGTAGATAAAGTCAAATGTTGTGTCTCTGCTGCCAAGAACAAATAATGCACTTTAACATAAGTAACGCTTTATTGTTGTTCCGCTACGAGTGGACATACTAGTTGAATGAAACGTCTCGGAGGACCACAGTGCTACATTATTCAACATAAATATGTTGTTGTCTAAGTATACATATACTATAACAGTTGACTATGCATACACAAAATGACAAACTGTACTAGTGCTTCACATAAATATTGTGCAGTTAACACTTGCGCTATCTTTTGAAGTGTTTGTAAAAGTGTCTGGCGCATATAAAGAGCCGCTCTCTGCACTATAAATACGGTCATCGAGGAGTCTTTGTGCAGTGTTTGCTGCCTTTCAGAGTCTCATTTCACGGATCTGAGGGTTACAGCCCTCCTGGCTGGCTGCTGCCATGCCCACAAGTGTATGCCAGCCATGCTCTTTAAACTCTGGGCATCTCTCACCGAACCACGGGCCAATAGATTTTCTGGTGCATATAAAGTGCGTTACCACAGATGGTTTTTCCAGCCCACTCACCTGTGTGCAGTTCACTCAGAAAGGTTTCTTTTTGAAAAGGGTTCTTTTTTGACGGGTTTTTATGTGGTGCATGGTTAGGGGTGGGGGGATTAGATGTTGCTGAGGTAAGGTTGCGGTGGATGTGGTTTCAGAAGGTGATTGCAGTTGAGGGCTCTCACAGCCTTGGGGGAATAAGCTGAGAGAGGTAGCGTCTACCTGATGACAGAGCTGGAAGAGATTgtgggatggatggatggggtCGCTATGCAATGAAAGGTTAACCTAGCGTTAACCTTTAGCGTGAATAGGATGTTTCTTCAGCGATGGATCCTTCAGGAAAGAGTCGAAACTGAAGTACAGTgtggagaataaaattattttcaatttaaaatttaaaaatcactttttgggGGGCAGGACGGACTGGCAAGCAACGGAGTATGCTTAGGAAACAATTTTGAGAACGAATATAGATGTGACGTACAGTGTGCAAAACCAGAGCGTTTATATAGTGCATGTCATATAAACCCATTCGAACATATTCGCACTAAATCTTCCGCTTCCAGATGTCaaggctggaaaaaaaaaacggtttgaGAACACACACTGATAATGTCataatctttgttttgttaCAGAAGTTGCCTCTTCAATATGAAGAGGAAGGTTAGAGGAAACCTGTTATACACATGTCCCTGGATCCCTCACTGAGCGGGTGAAACTTCAGCTCCGACTTCTTAAACTTGgaTTTCGATTAACTTTCAAAATGGGAGATTGGGATTTTCTCGGAAGACTGCTGGATAGAGTCCAGGCGCACTCAACGGTGGTGGGAAAAATCTGGCTCACCGTCCTGTTTGTGTTTCGGATTCTAGTCCTCGGCGCCGGTGCCGAAAGAGTGTGGGGCGACGAGCAGTCGGACTTCATCTGCAACTCGGAGCAGCCCGGGTGCGAGAACGTCTGCTACGACCAGGCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTGCAGATCATCTCGGTGTCGACGCCTACTCTGGCCTACCTGGGCCACGTCGTCCACGTCATCCATGTCGaaaagaaagtgagagaaatGATGAAGAAAGAGCTCCAGAATGAGCAAATCAGTCTGTTCCTGAAGAAAGTCTACAAACTCCCCAAGTACAGCAGGGACAATGGGAAGGTCAACCTTCGGGGGCGTCTCTTGAGAAGCTACATTCTGAGTTTGCTTTGCAAGATACTTTTAGAGGTGGGTTTCATCTTAGGACAGTACTACCTTTATGGCTTCACTCTCGAGGCCCAGTACGTCTGTGCCCGCTTTCCGTGTCCTCACAAGGTGGACTGTTTCTTGTCGAGGCCTACCGAGAAAAGCATCTTCATTTGGTTCATGCTGGTGGTGGCCTGCGTCTCCCTGCTCTTAAACGTGGTTGAGATCTTTTATCTTTCTGTTAAGAAGATCAACGAGTGTCTCAGTCGCAAAAAGGACTACACCATCACTCCCGTGACCCCCGTCGCGAGCAGGAAGGACTTCAAAACTACAGATCAGGTGATTCAGAACTGGATGAACCGTGAGGCGGAGCTTCAGAAGAGGGAACTTGGCAATGAGGCAACCAAGAGCGTGGCTTCAGAAAACCACAGCGTTGACATGCAAGAGATCCATATCTGATCAGCGGGGCTCTGTACACAAAGGCTTTCGCACGATCGACTCGAGCAAACAGCCACTGAACCAAGAGACTCGTGCACGGTCGAGACCCCCCGACTTCAAGCGCGCCGTggctctctctctgtttaacGAATCGATAATGTATCGCTGAAAACTcttatctgtttttgtttgttcgtttttctCATTTAAGTCTGAAACTGGGCTCAGGTTCAGCAGAAGTAAAGCTTCAAACTGTGTCATGGAAAGTGTGTTTTGGATTTTTCTTCGTTCTCTATTTTAGCGTACCTTCAAAGACAATGAATATTTAGTAGCCCTTACTACagtcagaaatcattctaatacgccgATTACTGTCAATGTCGaaaacagcttaatatttttctggattcatatttttaatgatatgaTAAACAGAAAGCATTACTTGAAatgtaacatataatataatgccTTTACTTCAATGCATGGTTCAATGCATCCTCGtggaataaaagcatt

Function

NR:

description
gap junction Cx32.7 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219347.1 True 3173 mRNA 0.43 2 23824931 23829080

Neighbor

gene id symbol gene type direction distance location
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding upstream 52 23823100 ~ 23824879 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding upstream 504115 23312199 ~ 23320816 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding upstream 513465 23232384 ~ 23311466 (+)
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding upstream 602016 23215076 ~ 23222915 (+)
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding upstream 610884 23210790 ~ 23214047 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding downstream 152 23829232 ~ 23831383 (+)
gja12.1 cx28.9,LOC107717177,LOC107717184,LOC107598108,LOC107697093,LOC107602175,LOC107727580,LOC107675219 coding downstream 3238 23832318 ~ 23835853 (+)
gja13.1 cx32.2,LOC107727577,LOC107675217,LOC107602176,LOC107697126,LOC107717163,LOC107598087 coding downstream 11692 23840772 ~ 23843490 (+)
gja1b LOC107675226,LOC107602186,LOC107716890,LOC107598086,LOC107697125 coding downstream 15007 23844087 ~ 23847503 (+)
hsf2 LOC107727660,LOC107602187,LOC107675230,LOC107716856,LOC107598084,LOC107675083 coding downstream 111584 23940664 ~ 23945954 (+)
G141439 NA non-coding upstream 42211 23782508 ~ 23782720 (+)
G141436 NA non-coding upstream 53505 23771095 ~ 23771426 (+)
G141403 NA non-coding upstream 253477 23571095 ~ 23571454 (+)
G141216 NA non-coding upstream 416107 23388492 ~ 23408824 (+)
G141207 NA non-coding upstream 492565 23330191 ~ 23332366 (+)
G141464 NA non-coding downstream 118536 23947616 ~ 23948827 (+)
G141465 serinc1,LOC104938560,LOC102778905 non-coding downstream 120181 23949261 ~ 24007460 (+)
G141469 NA non-coding downstream 125814 23954894 ~ 23966589 (+)
G141466 NA non-coding downstream 175607 24004687 ~ 24086637 (+)
LOC122324430 NA non-coding downstream 193054 24022134 ~ 24032657 (+)
pln NA other upstream 473276 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 964604 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 1070770 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 1307248 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 1348157 22471761 ~ 22476774 (+)
G141475 NA other downstream 243791 24072871 ~ 24074423 (+)
G141524 NA other downstream 611163 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 627910 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1139800 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 1334901 25163981 ~ 25168421 (+)

Expression


Co-expression Network