gja13.1 (cx32.2,LOC107727577,LOC107675217,LOC107602176,LOC107697126,LOC107717163,LOC107598087)


Basic Information

Item Value
gene id gja13.1
gene name cx32.2,LOC107727577,LOC107675217,LOC107602176,LOC107697126,LOC107717163,LOC107598087
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23840772 ~ 23843490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219349.1
ATGCCAAAAGTGTGAACATGTTGTTGAATTGTATTGATTTAGCAGaaactttcttcttttcttctctatTTTGAGCACAGTGCCACTGAAAACATGGTTGGTTACGTGTCTTCTGGAGGTCACAGTCCCTGTTCCTCATGGGGCCACGCCGCAGCTCCATCACGTACATCTCCTGCTTCCACTTAGCAGCATAAACATAGCCGATGATCTGAATTTCGCGATGGGCGGAGCGTTCGGGGTCCCCTCAGATATAGGTAAACCACGTTTTACGGGGAGAAGATGATCGATCGAAACCATCGAGCCTCATCCAGTCCGTGACCTAACCCGAAACCGGCAAGATATTTCGCGTTTTACCAACACAGAGGTTTTGTTTGAGAACTGACCTGACATTTCAGGAAGCCGAATAAGgaaatatgttcatttaaatacacgATTAggaataatgttaaaataatatttaggatCGCTGGTAGTTACAGTTTGGATCTATTTGTTCAGGGCGTCGACCAACACTCCCGAGCGTTTCTTCCTCCGTGATATTATTCGGGAAGCCCTAAGCCACTGAGTGACCAATCATGGGAGACTGGGGATTCCTCTCAGCTTTACTAGACAAAGTCCAGTCCCACTCCACCGTCATCGGGAAGATATGGATGAGCGTCCTCTTCATCTTCAGGATCCTGGTGTTAGGAGCAGGAGCGGAGAGCGTGTGGGGCGACGAGCGCTCCAACTTAGTATGCAACACCAACACGCCGGGCTGCGAGAACGTGTGCTACGACTGGAAGTTCCCCATCTCTCACATTCGCTTCTGGGTCATGCAGATCATCTTCGTCTCCACCCCGACCCTGGTCTACCTGGGCCACGTGGTGCACGTCATCCACCGCGAGAACAAACTGAGAGAGGAGCAGAAAAGAAACCCGGCGTCCAAGTCCCCGAAGTACACCGACGAAAAAGGCAAGGTCGAAATCAAAGGGACCATGCTGGGCAGTTACCTGACCCAGCTGttcattaaaatagttttcgAGGTGGCTTTCATCGTCGGACAGTATTACCTGTTCGGATTCTTCATGGAGCGCAAGTTCCACTGCGAGCGGCTGCCCTGCACGGTGGTGACCGAGTGTTTCGTGTCGAGGCCCACGGAGAAGACCATCTTCATTATCTTCATGCTGGCGGTGGCGTGCGTGTCTCTGGGCTTGAATGTTCTAGAGATCTTCTATCTGCTTTGCAAGAGGATGAGCGGGAGGAATAAGAGGTGTAAGAACGCGACGTATCCTGGCGATTCCCGTTATCCCTCGCCTTTCACCGTAGAGCTCGATTCCGCTCACGGTACGAGACACAACGAGCTAAACAGGGCCTTTCAGAACAGGTGGGATCAAAGCAAGGGCGGCCTGGACGGAGCCAGACCCGAGCCGTAGAGCAATAAGCCAATGCAcgtaaaaaatacattcatctTCTTATAATCACGTACCACAGATCATGGTGGCTAAAGTAACGCTAGATGGCGCTGTGATCTTCCACGAGTTGCACTCACTAACCCCTAACTTGTCACTACAAGgccagtgatttttttttattttttctccccGACTTACTGtagtatttatattcttttttttttgtatgttgttttcGCAGCGTGACGCGAAACATGTTTAACCGACTTTTTCTGtttgtgcaataataataaaccgtGTAAGGCAGAtaagtgaatgaaaatgttttcttatgCAGAAGTGACTTCGGGAACAAAGTTCATCAATTAGCCTGTTAAAACACAAGTGATGTCTTTATGGACTTTATGGAAAAACACTATCGTAATATACATTCTACATACTTCATTTAAATCTACGAAATGATTGTATTAGTTCACACatgattttataatatttataaatatttttataatatttaacaatataagtgcgtatatatatatatatatatatacatcataagttaataagtaaattaaaatgt

Function

NR:

description
PREDICTED: gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219349.1 True 1974 mRNA 0.45 4 23840772 23843490

Neighbor

gene id symbol gene type direction distance location
gja12.1 cx28.9,LOC107717177,LOC107717184,LOC107598108,LOC107697093,LOC107602175,LOC107727580,LOC107675219 coding upstream 4919 23832318 ~ 23835853 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding upstream 9389 23829232 ~ 23831383 (+)
gja11 cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110 coding upstream 11692 23824931 ~ 23829080 (+)
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding upstream 15893 23823100 ~ 23824879 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding upstream 519956 23312199 ~ 23320816 (+)
gja1b LOC107675226,LOC107602186,LOC107716890,LOC107598086,LOC107697125 coding downstream 597 23844087 ~ 23847503 (+)
hsf2 LOC107727660,LOC107602187,LOC107675230,LOC107716856,LOC107598084,LOC107675083 coding downstream 97174 23940664 ~ 23945954 (+)
slc24a4b slc24a4b,slc24a4,LOC107719386,LOC107559124,LOC107669463,LOC107704063,LOC107548412 coding downstream 127590 23971080 ~ 24004048 (+)
fut8b fut8b,fut8a,fut8,LOC107730784,LOC107726710,LOC107559123,LOC107669464 coding downstream 278367 24121857 ~ 24348875 (+)
LOC122324313 hsp90ab1,LOC107704054,LOC107669433,LOC107559118,LOC107568216 coding downstream 418999 24262489 ~ 24268335 (+)
G141439 NA non-coding upstream 58052 23782508 ~ 23782720 (+)
G141436 NA non-coding upstream 69346 23771095 ~ 23771426 (+)
G141403 NA non-coding upstream 269318 23571095 ~ 23571454 (+)
G141216 NA non-coding upstream 431948 23388492 ~ 23408824 (+)
G141207 NA non-coding upstream 508406 23330191 ~ 23332366 (+)
G141464 NA non-coding downstream 104126 23947616 ~ 23948827 (+)
G141465 serinc1,LOC104938560,LOC102778905 non-coding downstream 105771 23949261 ~ 24007460 (+)
G141469 NA non-coding downstream 111404 23954894 ~ 23966589 (+)
G141466 NA non-coding downstream 161197 24004687 ~ 24086637 (+)
LOC122324430 NA non-coding downstream 178644 24022134 ~ 24032657 (+)
pln NA other upstream 489117 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 980445 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 1086611 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 1323089 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 1363998 22471761 ~ 22476774 (+)
G141475 NA other downstream 229381 24072871 ~ 24074423 (+)
G141524 NA other downstream 596753 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 613500 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1125390 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 1320491 25163981 ~ 25168421 (+)

Expression


Co-expression Network