rab10 (rab10,LOC107593269,LOC107697207,LOC102798439)


Basic Information

Item Value
gene id rab10
gene name rab10,LOC107593269,LOC107697207,LOC102798439
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21516779 ~ 21530446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219388.1
GAAATCTAGGGTGTCGCCGTGGTGGCTCCATTCGAAGGCGACGGCGGTTGGTCGGTCGTCTCTGTGTTTGTCCTCTTCCAAACTTCACGAACGGACCCGGTGCAGACTGTCGGTTCGGATCCAGCTGTCAAACGAGATCTGTGCGGTTCGGCATCGCTGGGATGAAGCggaatatttttcatttgaatcagatcGCTGGTGTAGTTTGAAGAAAGAGAGTCGGGCGGAGGAGCCATTTTGTCCCGAcagtgtgagagaaagaaagacaagagACATTAAAAACACCAGACACCACACTTCCAGGGGAAACGCACGTCTTAAACATCTCCTTCggagtttaaaaaaagagtcgACAGAGGAAATCAACGCAATTCAGCTGTGAGGAGACTGTCCGGTGTGTGTTTTCggataacacacacacgctttccCTTTAACACACGCTCGGTCTCTATCGGTTTCTCAGCAGCGTGTGTTTATAAGAGCTCAGATGGCGAAGAAGACCTATGATCTGCTCTTTAAACTGCTCTTGATTGGTGATTCTGGGGTGGGAAAGACCTGCGTGCTGTTCCGATTTTCAGATGACGCCTTCAACACCACCTTCATCTCCACTATAGGAATCGATTTTAAGATCAAAACAGTTGAATTGCAAGGAAAGAAGATAAAGCTACAGATATGGGATACAGCGGGGCAGGAGCGCTTTCACACCATCACTACCTCTTACTACAGAGGGGCCATGGGAATCATGCTCGTATATGACATCACCAACGCCAAGAGCTTCGAAAACATCAGCAAATGGCTCAGAAATATTGATGAGCACGCTAACGAGGATGTGGAGAGGATGCTGCTAGGCAACAAGTGTGACATGGAGGACAAACGTGTTGTACCAAAAGCCAAGGGGGAACAGATCGCGAGAGAACATGGGATTCGCTTCTTCGAGACGAGCGCAAAAGCCAACATCAACATCGAAAAGGCGTTCCTCACGTTAGCAGAAGACATTCTCAGAAAGACGCCCGTAAAAGAGCCCAACAGTGAAAACGTGGACATCAGCACTGGCGGTGGAGTCACAGGATGGAAGACCAAGTGCTGCAGTTGAACAGACACACAGTTACtcacacactttacacacacacacacacacacacacaatctgttCTTCTGtatccctccctctctctctctctctctctctctctctctctctctctatcttttaTTCACTCATCTCTTATTTCTGTCTAACACTCTTCCGTTCTGTCCTTCTCACGGATTCTCCGTAAAAACACATCTCTAACGTTTCTCACACTCACGACTGCTTGCtgacatcatttttatttctgaaaaaaaaaaaaaaagcaaaaacaaatgtaaagagaaagtcatttcatgtttcttcttattttaaagtttaaaaaaagaaagaaagaaatgaatttaaacaaaaaagcgCATTCACCACTACATAGAGACCGTCAGTGGACCTGGAGACGCTGTCCGTCGGCACAGAGGAGCGGCATAGCGTTTTAGACGAGACTTTTGTCCAGTGTTTTGGGGTTAGTGTTGTGTGTTAGTGTGAGAGATCTTCTCTAGCtgggtttttttgttctttgatttgatttctttcGTCCGGTGCCTTAATGTAGAGCCTTAGAGCTCATcccccccaaacacacacatttaaacatcaCTTTTCTGtaacagttacacacacacacacacacacacactggtccTCTCCTCTCTGCTTGACCCGCTAACTCAACCCAACATGCCCGAGTGGAACCATCCGGATTCAACCTGTTTGCTCAGAAGAGAatggcattatatatattttttgtttcgttttattttttaaatttagttttcagAATGACATGTTTTATGAATCTcctctgtatgttttttttgtttgttttttttgttttccttcactCAGTTACTCATTCTCTCCTGCATGCTGGTTTCTTTGGGTTTTTTGGGGTCTTTTGTAAGTTTTGCCATGTTTGTAATTCACAGGAAGTATCTCTTCTAGTCCAGACACAGTGTCAGGGAGGGGAGCGTTCTCTTTGGAAATTCAAACGATTTTGCAGATCCATTAAAAATAAGCTTGTTTAAGTTA

Function

symbol description
rab10 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon development. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB10 (RAB10, member RAS oncogene family).

NR:

description
ras-related protein Rab-10

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07903 RAB10; Ras-related protein Rab-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219388.1 True 2116 mRNA 0.44 6 21516779 21530446

Neighbor

gene id symbol gene type direction distance location
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding downstream 201452 21305710 ~ 21315327 (-)
prdm1c NA coding downstream 242541 21265415 ~ 21274238 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding downstream 251812 21259533 ~ 21264967 (-)
tram2 tram2,LOC107593275,LOC107721446 coding downstream 260173 21250748 ~ 21256606 (-)
LOC122324706 NA coding downstream 348720 21154385 ~ 21168059 (-)
gnpat2 si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372 coding upstream 99824 21630270 ~ 21639546 (-)
lpin1b si:ch73-21k16.1,LOC107708326,LOC107593263,LOC107685350 coding upstream 109883 21640329 ~ 21655564 (-)
fez2b si:ch211-57i17.1,LOC107708323,LOC107685354,LOC107719364,LOC107550411 coding upstream 159972 21690418 ~ 21697694 (-)
wdr26b wdr26b,LOC107697199,LOC107708322,LOC107685355 coding upstream 168960 21699406 ~ 21713062 (-)
LOC122324966 LOC107685373,LOC107593287,LOC107708319 coding upstream 183038 21713484 ~ 21730228 (-)
G140808 NA non-coding downstream 33479 21482618 ~ 21483300 (-)
LOC122324488 NA non-coding downstream 38921 21437692 ~ 21477858 (-)
G140688 NA non-coding downstream 80721 21435797 ~ 21436058 (-)
G140687 NA non-coding downstream 81310 21434944 ~ 21435469 (-)
G140683 NA non-coding downstream 84685 21431806 ~ 21432094 (-)
G140817 NA non-coding upstream 18638 21549084 ~ 21552231 (-)
G140826 NA non-coding upstream 37187 21567633 ~ 21568360 (-)
G140824 NA non-coding upstream 46392 21576838 ~ 21671924 (-)
G140807 NA non-coding upstream 167974 21698420 ~ 21699275 (-)
G140859 LOC107593260 non-coding upstream 197207 21727653 ~ 21768597 (-)
LOC122324936 NA other downstream 4296 21507244 ~ 21512483 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other downstream 11124 21483592 ~ 21505655 (-)
G140616 NA other downstream 238038 21198710 ~ 21278741 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 425771 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 541024 20968188 ~ 20975755 (-)
batf batf,LOC107697118 other upstream 202098 21732544 ~ 21741077 (-)
G140883 NA other upstream 310667 21841113 ~ 21841468 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other upstream 311986 21842432 ~ 21844633 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other upstream 314768 21845214 ~ 21846917 (-)
G140972 NA other upstream 582156 22112602 ~ 22113044 (-)

Expression


Co-expression Network