LOC122324745 (LOC107549679,LOC107678820,LOC107697069)


Basic Information

Item Value
gene id LOC122324745
gene name LOC107549679,LOC107678820,LOC107697069
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23210790 ~ 23214047 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219390.1
tccaaaacttttatttttctttatttgctgCACCACCCAaccttatatattatattaaataataaattggagcctcattttataaaaaataatcacagaAAAATTACAACCGTGAACGAACAAcataccaaaataaataaatgtcaaaaaaaataaatgtaacgaaGTCAATAAATGTAAGTAGTGTTTTAACCCAGTAgtccaaaatatacattttgctccattttaggttttaaagttaatattacTGGGTGCAAAGAGAATTTATACGtaagaaatgtgtttgtgtaacaGAATAGGTTGTGGATAGTTCATCAGCAAAACTGACATCTGTAAACGGACAGGACGCTCTATTGCTGATATGCCAGTTCCTTGCCGGTGTCGAATTTTGTTTTCTAACCAAGATAGTGATCTCAGCCATTGTTCCAAATAAAGCAAGAGGAGTCTTATTCTCACAAGCGTGAATCTGCCTCAGCTATTTAAGCCTCGGACGCTCAAAATGCTGCTTCAGCACACGGATgtgtaaagctttttttttttccaaaatggtgATATTTGGCCTTTTTCTGTGTGTCTTGCTCTACAGTCAACCTGGCCGCTGCAGCCACATCTGTCCAAAAACCTGCATCTGTGAGCAGGCAACCTCAGTGCAGTGTTTCAGGGCTCAGGCTGTTCCTCCAGTCGTCTCAAACGACGTGAAGAAAATACACCTGGGATACAATCACCTCAAAGAGCTGAAGGTCAGAGATTTTTCCGGTCTGCCAGGCCTTGAAGAAGTCGTTCTGTCGTCCGGCGGGATCGAGCAGATCGACGCCGACGTGTTCCGATCTCACGTGTCGCTGAGAACTCTGGACCTTCAGAAAAACAAGCTGAGACAGCTTCCCCGCGGCCTGCCCTCTGGCCTGGAGATCCTCCGTTTGGGCCACAACAGGATACACAGCCTGCAAGAGTCGGCCCTGGAGGGCCTCAAGAAGCTGCGGGTCCTGAACCTCCGGAATAACCAGATCAGCACCCTACGATCAAACCCGCTAGCATCGCTCGAGAAGCTCGAGTGTCTTAATCTGGATGGGAATGAAATCGAATCAATACACAGCGCCCTCGATTTGCCCTTTCTCAATTCGCTCAGCGCGGCGAGCAACAGGATCTCGTCCGTATCACCAACGTTCTTCTCGTCGCTGCAGCTTCTAAAAACGCTAGATTTGTCTTCAAACCGCCTCACCAAAGTCCCCCGCGATCTCCCCCGCTCTCTGGTTCAGCTGAACCTGGACAGGAATCGGATCCGATCGCTGAGGAGTCGTGACATGTCCCGGCTGCACAACCTCATTAGCCTTTCTGTCAGCTCCAACAGGCTGGTGTCGGTGGACGGGGGTCTTCGCCTGCCGAATCTCTCTGTGTGCGAGTTGGCAGGAAACCGGCTACGAACGCTGCCTGCCAGATTGACCTCTAAACTGCAAAAGCTGGACTGCAGGCAGAACGACATCCGGGAAGTCACTTTCCAACAGCTAGCGGGGATGAAGCTTCTGAAACATCTCTTTTTGGAAAACAACTCCATCCAGCACTTCGAAGCGAACGCCCTGAGAAACTGCATTCAGCTGACCAGCCTAGCGCTAGAACAGAATCTGCTTTCTGCTGTTCCTCATGGGCTTCCTGAGACACTAGTCCGTTTGGATCTGAAGGGGAACAACATTGACACAATACATGAACGTGAGCTGAAGCCTCTCAGACGACTGCAGGTGTTAAATCTGCGCAACAACAAACTCTCCGGCCTGCCTGCATTGAACCTACCAAAACTAAAAGTTCTGTATTTGGATGGAAACCCGTGGCAGTGCAGCTGTGAACTCATCAAGGTCAAAAAGGCCCTTTTAGCAAAGGATGTGGAAATCAGGCCTGATTTCTGTAGCGAGCCCGTCCGTGAATCTCTTGACGAATGGCGAGCTTATGTACTGGCACGAGATATCTGTGAGAAGCAGACCAGGGATTTGTTACTGGACGGCCAGACCGAACGCATGGACAATGAGGAATATGATGATTATGATTTGTAAATGTGAGACGTCGCCTTCCTGCATGCTTTGTTACTGTTTGCATCCCATGTAGAAAAAACCCCCAATAAATTTAATCTGTTGTA

Function

NR:

description
PREDICTED: nephrocan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219390.1 True 2125 mRNA 0.47 3 23210790 23214047

Neighbor

gene id symbol gene type direction distance location
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding upstream 18405 23164445 ~ 23192385 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding upstream 63814 23142907 ~ 23146976 (+)
rfx6 rfx6,LOC107678847,LOC107697139,LOC107743320 coding upstream 91654 23109345 ~ 23119136 (+)
trnal-cag_35 NA coding upstream 110502 23100206 ~ 23100288 (+)
plg plg,LOC107678850,LOC107727632,LOC107697138,LOC107743301 coding upstream 148514 23055116 ~ 23062276 (+)
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding downstream 1029 23215076 ~ 23222915 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding downstream 18337 23232384 ~ 23311466 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding downstream 98152 23312199 ~ 23320816 (+)
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding downstream 609053 23823100 ~ 23824879 (+)
gja11 cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110 coding downstream 610884 23824931 ~ 23829080 (+)
LOC122324747 NA non-coding upstream 4708 23194621 ~ 23206082 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding upstream 137125 23066587 ~ 23073665 (+)
G141121 NA non-coding upstream 287662 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 653288 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 668258 22542136 ~ 22542532 (+)
G141207 NA non-coding downstream 116144 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 174445 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 357048 23571095 ~ 23571454 (+)
G141436 NA non-coding downstream 557048 23771095 ~ 23771426 (+)
G141439 NA non-coding downstream 568461 23782508 ~ 23782720 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 350463 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 456629 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 693107 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 734016 22471761 ~ 22476774 (+)
G140785 NA other upstream 1366089 21844146 ~ 21844701 (+)
pln NA other downstream 129668 23343715 ~ 23351655 (+)
G141475 NA other downstream 858824 24072871 ~ 24074423 (+)
G141524 NA other downstream 1226196 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1242943 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1754833 24968880 ~ 24994837 (+)

Expression


Co-expression Network