gopc (gopc,LOC107727658,LOC107743304,LOC107697149,LOC107678854)


Basic Information

Item Value
gene id gopc
gene name gopc,LOC107727658,LOC107743304,LOC107697149,LOC107678854
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23197531 ~ 23210436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219391.1
tcGGCAGCTAGCTGAAGTTTTCTTTTGATTAaacttaatttgttttgttttagtgaatCGTAATACTGTTTATACTCGGTAATCGAATCGCTCGTCTATCGACTTCTTCATTGACGGGCTCCATCGTGTGGCAGACCAAACCAATCGATCCCCGCTCGATCGGCTCGCTCTCGGATTTCCTGGTCAGATGAGAGCGCGGAAAAACACGCCGACAAAACATCGCTCTCGCTCTCTATCTCGTCGGAAGTCTGGCGTTAATATAACTTCATCGGCCGGCGATCGCACCGAGTAAAGGACTACAGTTCGGGTTATCCGTGCGTTCTTCTTGCGTCCGTGTTAAACATGTCTGCGTCCGCTGGCGGTGCTGTCTCCCCGGGCTCGGCCCTCTCTCCCGGTCCCGCCGCGGCTCCCGGCTCCGGTATGTCCATGTTCCGGTGGCTGGAGGTGCTGGAGAAGGAGTTTGACAAGGCGTTTGTGGACGTGGATCTGTTGCTGGGAGAGATCGACCCGGATCAGGCTGATATCACGTACGAGGGCCGTCAGAAGATGACCAGCCTCAGCTCGTGTTTTGCTCAGCTGTGTCATAAATCACAAACCATCTTTCAGCTCAACCACAAACTAGAGGCTCAGCTGGTGGACCTGCGGTCGGAGCTGACAGATGTCCAGGCAGAGAAGGTTGTGGTGGAGAAGGAGGTCCACGAACAACTTCTTCAACTTCACGCCATGCAGCTCAAACTCCAAGCCAAAGGTGGACAGGCGGTCGACTCTGACTCTATCAAGGACAGGATGCCTGTTCCCTCAGTGGAGGACAAGGAGAAGGAGCTGGAGGCcagcaagaaagaaaaagtgaagGAGGCCAAGTTGGAGGCAGAGGTGAAGATGTTGAAGAAAGAGAACGAGGCCCTCCGCAGGCACATTGCGGTACTACAGGCCGAGGTGTACGGCGCCAGACTGGCAGCCAAGTATCTGGACAAGGAGCTGGCAGGGAGGGTGCAGCAGATCCAGTTGCTCGGGAGAGACATGAAAGGACCAGCTCATGACAAGCTGTGGAACCAGCTTGAAGCTGAGATTCACCTGCACCGCCATAAAACAGTGATCCGAGCCTGCAGGGGGCGCAACGATCCCAAAAAACCCTTGCCATCACCCGTGGGGCATGACACAGATTCTCTGAAAAAGACTCAGGGAGTAGGCCCTATACGCAAAGTGGTTTTGACCAAAGAAGATCACGAAGGACTTGGCATCTCTATTACCGGCGGGAAAGAGCACGGCGTTCCCATCCTCATCTCCGAAATCCACCCAACCCAGCCCGCAGAGCGCTGCGGAGGACTGCATGTGGGAGATGCCATCTTAGCCGTCAACAACATCAACCTGAGAGATGCAAAGCACAAAGAGGCCGTCACCATCCTCTCGCAGCAGCGGGGGGAAATTGAGTTCGAGGTGGTTTACGTGGCTCCAGAGGTGGACTCTGACGATGAGAACGTGGAGTATGAAGATGACAGCGGACACCGCTACCGTCTGTACCTGGACGAGCTGGAGGAGGGGTCAGGAGCCGCTCACAATAATGGCACTGCTGACCCTGCTTCCCTACAAGCTGTAGGGAAGCATTTAGTGAACAACAGAACAGAGAACGGAGACGCTGCTTTGTCCAGTGAAAGTCCTTCAGACGACAAGACCTCCAAGACGGCAGAGTCTGCAGAGAGCTCCTCCTAGATCTCCAGACTAC
>XM_043219392.1
ctcGGCAGCTAGCTGAAGTTTTCTTTTGATTAaacttaatttgttttgttttagtgaatCGTAATACTGTTTATACTCGGTAATCGAATCGCTCGTCTATCGACTTCTTCATTGACGGGCTCCATCGTGTGGCAGACCAAACCAATCGATCCCCGCTCGATCGGCTCGCTCTCGGATTTCCTGGTCAGATGAGAGCGCGGAAAAACACGCCGACAAAACATCGCTCTCGCTCTCTATCTCGTCGGAAGTCTGGCGTTAATATAACTTCATCGGCCGGCGATCGCACCGAGTAAAGGACTACAGTTCGGGTTATCCGTGCGTTCTTCTTGCGTCCGTGTTAAACATGTCTGCGTCCGCTGGCGGTGCTGTCTCCCCGGGCTCGGCCCTCTCTCCCGGTCCCGCCGCGGCTCCCGGCTCCGGTATGTCCATGTTCCGGTGGCTGGAGGTGCTGGAGAAGGAGTTTGACAAGGCGTTTGTGGACGTGGATCTGTTGCTGGGAGAGATCGACCCGGATCAGGCTGATATCACGTACGAGGGCCGTCAGAAGATGACCAGCCTCAGCTCGTGTTTTGCTCAGCTGTGTCATAAATCACAAACCATCTTTCAGCTCAACCACAAACTAGAGGCTCAGCTGGTGGACCTGCGGTCGGAGCTGACAGATGTCCAGGCAGAGAAGGTTGTGGTGGAGAAGGAGGTCCACGAACAACTTCTTCAACTTCACGCCATGCAGCTCAAACTCCAAGCCAAAGGTGGACAGGCGGTCGACTCTGACTCTATCAAGGACAGGATGGAGAAGGAGCTGGAGGCcagcaagaaagaaaaagtgaagGAGGCCAAGTTGGAGGCAGAGGTGAAGATGTTGAAGAAAGAGAACGAGGCCCTCCGCAGGCACATTGCGGTACTACAGGCCGAGGTGTACGGCGCCAGACTGGCAGCCAAGTATCTGGACAAGGAGCTGGCAGGGAGGGTGCAGCAGATCCAGTTGCTCGGGAGAGACATGAAAGGACCAGCTCATGACAAGCTGTGGAACCAGCTTGAAGCTGAGATTCACCTGCACCGCCATAAAACAGTGATCCGAGCCTGCAGGGGGCGCAACGATCCCAAAAAACCCTTGCCATCACCCGTGGGGCATGACACAGATTCTCTGAAAAAGACTCAGGGAGTAGGCCCTATACGCAAAGTGGTTTTGACCAAAGAAGATCACGAAGGACTTGGCATCTCTATTACCGGCGGGAAAGAGCACGGCGTTCCCATCCTCATCTCCGAAATCCACCCAACCCAGCCCGCAGAGCGCTGCGGAGGACTGCATGTGGGAGATGCCATCTTAGCCGTCAACAACATCAACCTGAGAGATGCAAAGCACAAAGAGGCCGTCACCATCCTCTCGCAGCAGCGGGGGGAAATTGAGTTCGAGGTGGTTTACGTGGCTCCAGAGGTGGACTCTGACGATGAGAACGTGGAGTATGAAGATGACAGCGGACACCGCTACCGTCTGTACCTGGACGAGCTGGAGGAGGGGTCAGGAGCCGCTCACAATAATGGCACTGCTGACCCTGCTTCCCTACAAGCTGTAGGGAAGCATTTAGTGAACAACAGAACAGAGAACGGAGACGCTGCTTTGTCCAGTGAAAGTCCTTCAGACGACAAGACCTCCAAGACGGCAGAGTCTGCAGAGAGCTCCTCCTAGATCTCCAGACTAC

Function

symbol description
gopc Predicted to enable transmembrane transporter binding activity. Predicted to be involved in cytoplasmic sequestering of CFTR protein and negative regulation of protein localization to cell surface. Predicted to be active in Golgi apparatus; membrane; and trans-Golgi network transport vesicle. Orthologous to human GOPC (golgi associated PDZ and coiled-coil motif containing).

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K24054 GOPC; golgi-associated PDZ and coiled-coil motif-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219391.1 True 1723 mRNA 0.54 9 23197531 23210435
XM_043219392.1 False 1700 mRNA 0.54 8 23197531 23210436

Neighbor

gene id symbol gene type direction distance location
tdrd15 LOC107727677,LOC107678846,LOC107603064,LOC107743302,LOC107697132 coding downstream 88170 23100351 ~ 23109361 (-)
igf2r igf2r,LOC107727636,LOC107603065,LOC107678818,LOC107743319 coding downstream 98185 23068158 ~ 23099346 (-)
slc22a2 slc22a2,LOC107678851,LOC107603093,LOC107727631,LOC107549708,LOC107697145,LOC107743318 coding downstream 130158 23062273 ~ 23067373 (-)
si:ch211-140l13.3 tcp10,LOC107603066,LOC107697070,LOC107580373 coding downstream 142791 23043100 ~ 23054740 (-)
afdna afdn,LOC107697133,LOC107678828 coding downstream 177793 22917664 ~ 23019738 (-)
cep85l cep85l,LOC107727619,LOC107603087 coding upstream 110738 23321174 ~ 23380628 (-)
fam184ab fam184a,LOC107678849,LOC107697135 coding upstream 192634 23403070 ~ 23508544 (-)
man1a1 man1a1,LOC107727625,LOC107697158 coding upstream 417825 23628261 ~ 23724208 (-)
gja12.2 cx28.1,LOC107727590,LOC107675221,LOC107717169,LOC107598107,LOC107697092 coding upstream 626049 23836485 ~ 23840023 (-)
serinc1 serinc1,LOC107675227,LOC107727646,LOC107675084,LOC107602188,LOC107598085 coding upstream 735739 23946175 ~ 23952434 (-)
G141370 NA non-coding downstream 1335 23195173 ~ 23196196 (-)
G141343 NA non-coding downstream 141475 23055048 ~ 23056056 (-)
G141331 LOC107726750,LOC107678830 non-coding downstream 281579 22909257 ~ 22915952 (-)
G141324 NA non-coding downstream 303516 22888520 ~ 22894015 (-)
G141319 LOC107726732,LOC107678815,LOC107697073,LOC107726733,LOC107697074,LOC107748126,LOC107553823,LOC107726734 non-coding downstream 307398 22878732 ~ 22890133 (-)
G141404 NA non-coding upstream 360560 23570996 ~ 23571790 (-)
G141477 NA non-coding upstream 560641 23771077 ~ 23771457 (-)
G141478 NA non-coding upstream 561081 23771517 ~ 23772116 (-)
G141479 NA non-coding upstream 564481 23774917 ~ 23781508 (-)
G141481 NA non-coding upstream 572893 23783329 ~ 23783811 (-)
G140972 NA other downstream 1084487 22112602 ~ 22113044 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other downstream 1350614 21845214 ~ 21846917 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other downstream 1352898 21842432 ~ 21844633 (-)
G140883 NA other downstream 1356063 21841113 ~ 21841468 (-)
batf batf,LOC107697118 other downstream 1456454 21732544 ~ 21741077 (-)
mcm9 mcm9,LOC107678857,LOC107549683,LOC107743310,LOC107697136,LOC107727573,LOC107603056 other upstream 174135 23384571 ~ 23401391 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other upstream 575316 23785752 ~ 23823050 (-)
G141502 NA other upstream 794251 24004687 ~ 24006665 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other upstream 1043957 24254393 ~ 24517743 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other upstream 1313633 24524069 ~ 24532363 (-)

Expression


Co-expression Network