LOC122324749 (msna,ezrb,LOC107685759,LOC107663223,LOC107557108,LOC107741191,LOC107597256,LOC107745284,LOC107549516,LOC107733309,LOC107659875)


Basic Information

Item Value
gene id LOC122324749
gene name msna,ezrb,LOC107685759,LOC107663223,LOC107557108,LOC107741191,LOC107597256,LOC107745284,LOC107549516,LOC107733309,LOC107659875
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5624200 ~ 5646907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219395.1
CACACAAAGCAGCGGCAGCAGCAGAGGCAGAGGCAGCGAATAACGGGGCCTGTGAGAATCCGGGCGGAGTTTAGTCAAACGCGCTTTGGTGTGCCTGCATCGGCTGGGCTGGGTGTGGTTTTCAAAACTCAGTTCCGTTAGCAGGAAACGACTCTAGGACCACCAGTACTTCTCTGACCGACAAAGACGCAGCGAAAAGTGAAACTTTGTCTTCGGGACCTGGAAGAGATTCGAGGAGAAGCTTTGGCGGTGGCGGTTGCTCGGTCTTGCGCGGGGACGTCAGTCGATGGAAAAAAGTTTGGCTTTCTGTTGACTTCATTGTATCAGCTCAGTTTGTGACACATCCGCGAGAGAAGAGACAAAACACAGTCAAAATGCCGAAAACGatCAGTGTTCGTGTGACTACGATGGATGCCGAGCTGGAGTTTGCCATCCAACCCAGCACCACAGGGAAACAGTTATTTGACCAGGTGGTGAAAACCATTGGGTTAAGGGAGGTGTGGTTTTTTGGACTGCAGTACCAGGATACCAAGGGCTTTACCACCTGGCTTAAACTCAACAAAAAGGTTACGGCACAAGACGTCCGTAAGGAGAGTCCTTTGCTGTTTAAATTCAGGGCAAAGTTTTTCCCTGAGGATGTTTCAGAGGAGCTGATTCAAGAGGCGACTCAAAGACTCTTCTTCCTTCAGGTGAAAGAGGGGATCCTGAATGATGATATCTACTGCCCCCCGGAGACTGCAGTGCTGCTGGCATCTTACGCAGTGCAGGCCAAATACACTGACTACAACAAGGATGTTCACACTCCTGGATACCTGTCCAGTGAGAAACTACTCCCACAGAGAGTTCTAGAACAGCACAAGCTGAATAAGGAGCAATGGGAGGAAAGAATTCAAGTCTGGCACGAGGAGCACAAGGGCATGTTGAGAGAGGACTCGATGATGGAGTATCTGAAGATAGCTCAGGATCTGGAGATGTATGGCGTGAATTACTTCAGTATCAAGAATAAGAAAGGATCAGAGCTGTGGCTTGGTGTGGATGCCCTGGGACTCAACATCTACGAGCAGAATGACAAgatGACGCCTAAAATTGGTTTCCCCTGGAGTGAGatcagaaacatttctttcaatGATAAGAAATTTGTCATCAAACCCATTGATAAAAAAGCCCCGGACTTTGTGTTTTATGCCCAGCGCTTGCGCATTAATAAGAGGATTCTGGCTTTGTGCATGGGGAACCATGAGCTTTATATGAGACGCCGTAAACCAGACACCATCGAGGTCCAGCAGATGAAGGCACAAGCCAAGGAGGAGAAGAACCACAAGAAGATGGAAAGAGCTCAGCTGGAGAGTGAGAAGAAGAGACGAGAGgccatagagagagagaaagagcagatGGAGAAGGAGAAACAGGAGCTGATGATTCGGCTCTACCAGTTTGAGGAGAAGaccaaaaaagcagaaaaagACCTGCAGGAGCAAATGCATAGGGCCGTGCAGCTGGAGAGTGAACGGAGACTGGCAGAGGAAGAGGCAGCCAGATTGGAGGCAGAGAGGCAGGCAGCCCTGCTCGCAAAGGAGGAGCTGGCCCGTCAAGCCCAGGACCAAAAGAAGAGTCAGGAACAGCTGGCTGCTGAGCTGGCAGAACACACTGCTCGTATTGCGCTCCTGGAGGAAGCCAAAAAACACAAGGAGGAGGAAGCTAAGACATGGCAGCACAGAGCACAAGAGGCCCAGGATGACCTGACGAAGACCCGTGAGGAGCTTAACATGATCATGACAGCGCCCACCAGCTTCACAAGTCTCCCTCCACCACCACCTGCATATGAACTTGATGAGAATGAGTACGAAGATAGGGAGAGCAACAATAGCTACAGTGCAGACCTGCAGACAGGTGGTATCAATGACCACCGCTACGAAGAGCAGCGAATCACTGAGGCTGAGAAGAATGAACGTGTTCAGAAACAGCTGTTGGCTCTGACCTCAGAGTTGGCCCATGCCCGTGACGACACCAAGAAGACTCAAAACGACCTGTTGCACACAGAGAATGTGCGCGCCGGCCGAGACAAATACAAAACTCTTCGGCAGATCCGCCAGGGAAACACGAAACAGAGGATTGATGAGTTTGAGGCCTTATAAAATATCTGGACCAGGAAACTTTGGAAATGAGGGAGGAAAGGAGTCTCAAAGCCCTTGTCCGTTTTCAATCTGTCCCTACATCTGAGTGGTCAATGCAAGAGGTACATCCTGCGTATAAAAGAGGTGCACATACGTTCAGTAATACAATTCGATTCGTTCAACGTGAACACTGGG
>XM_043219396.1
ATGCCGAGCTGGAGTTTGCCATCCAACCCAGCACCACAGGGAAACAGTTATTTGACCAGAGTTCTAGAACAGCACAAGCTGAATAAGGAGCAATGGGAGGAAAGAATTCAAGTCTGGCACGAGGAGCACAAGGGCATGTTGAGAGAGGACTCGATGATGGAGTATCTGAAGATAGCTCAGGATCTGGAGATGTATGGCGTGAATTACTTCAGTATCAAGAATAAGAAAGGATCAGAGCTGTGGCTTGGTGTGGATGCCCTGGGACTCAACATCTACGAGCAGAATGACAAgatGACGCCTAAAATTGGTTTCCCCTGGAGTGAGatcagaaacatttctttcaatGATAAGAAATTTGTCATCAAACCCATTGATAAAAAAGCCCCGGACTTTGTGTTTTATGCCCAGCGCTTGCGCATTAATAAGAGGATTCTGGCTTTGTGCATGGGGAACCATGAGCTTTATATGAGACGCCGTAAACCAGACACCATCGAGGTCCAGCAGATGAAGGCACAAGCCAAGGAGGAGAAGAACCACAAGAAGATGGAAAGGGCCATGCTGGAGGATGAACGTAAGAAGAGAGAGCAGGCTgagaaggaaaaagagaagattgaaaaagaaaaagaggagctGATGGAGAGACTCAAAGTGATAGAGGAGCAGACAAGAAAAGCTCAGCAAGAGCTTGAGGAGCAGACCCGCAGGGCGATGGAGTTGGATCAGGAGCGTAAACGTGCTCACGAGGAGGCGGAGCGCCTGGAACGGGAGCGTCGTCTGGCAGAGGAGGCCAAAACGGCTCTGCTGCAGCAGTCTGAGAGCCAGATGAAGAACCAGGAGCATCTGGCTGCTGAGCTGGCAGAACACACTGCTCGTATTGCGCTCCTGGAGGAAGCCAAAAAACACAAGGAGGAGGAAGCTAAGACATGGCAGCACAGAGCACAAGAGGCCCAGGATGACCTGACGAAGACCCGTGAGGAGCTTAACATGATCATGACAGCGCCCACCAGCTTCACAAGTCTCCCTCCACCACCACCTGCATATGAACTTGATGAGAATGAGTACGAAGATAGGGAGAGCAACAATAGCTACAGTGCAGACCTGCAGACAGGTGGTATCAATGACCACCGCTACGAAGAGCAGCGAATCACTGAGGCTGAGAAGAATGAACGTGTTCAGAAACAGCTGTTGGCTCTGACCTCAGAGTTGGCCCATGCCCGTGACGACACCAAGAAGACTCAAAACGACCTGTTGCACACAGAGAATGTGCGCGCCGGCCGAGACAAATACAAAACTCTTCGGCAGATCCGCCAGGGAAACACGAAACAGAGGATTGATGAGTTTGAGGCCTTATAAAATATCTGGACCAGGAAACTTTGGAAATGAGGGAGGAAAGGAGTCTCAAAGCCCTTGTCCGTTTTCAATCTGTCCCTACATCTGAGTGGTCAATGCAAGAGGTACATCCTGCGTATAAAAGAGGTGCACATACGTTCAGTAATACAATTCGATTCGTTCAACGTGAACACTGGG

Function

symbol description
ezrb Predicted to enable actin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; epiboly; and regulation of cilium assembly. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; nervous system; and prechordal plate. Orthologous to human EZR (ezrin).
msna Predicted to enable actin binding activity. Acts upstream of or within blood vessel lumenization and endoderm development. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Is expressed in several structures, including cardiovascular system; gut; hypochord; nervous system; and swim bladder bud. Human ortholog(s) of this gene implicated in immunodeficiency 50. Orthologous to human MSN (moesin).

NR:

description
PREDICTED: ezrin-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219395.1 True 2309 mRNA 0.50 14 5624200 5646907
XM_043219396.1 False 1527 mRNA 0.49 10 5624200 5636252

Neighbor

gene id symbol gene type direction distance location
trnal-caa_35 NA coding downstream 38277 5585812 ~ 5585923 (-)
trnal-caa_34 NA coding downstream 39799 5584290 ~ 5584401 (-)
trnal-caa_33 NA coding downstream 40812 5583277 ~ 5583388 (-)
trnal-caa_32 NA coding downstream 43348 5580741 ~ 5580852 (-)
trnal-caa_31 NA coding downstream 47871 5576218 ~ 5576329 (-)
LOC122324836 NA coding upstream 42476 5689383 ~ 5696894 (-)
trnal-caa_36 NA coding upstream 66601 5713508 ~ 5713619 (-)
trnal-uaa_30 NA coding upstream 121377 5768284 ~ 5768394 (-)
trnal-cag_33 NA coding upstream 139171 5786078 ~ 5786190 (-)
trnal-caa_37 NA coding upstream 144221 5791128 ~ 5791239 (-)
G136188 NA non-coding downstream 504434 5112173 ~ 5119766 (-)
G136180 NA non-coding downstream 527139 5091300 ~ 5097061 (-)
G136176 NA non-coding downstream 590396 5033599 ~ 5033804 (-)
G136175 NA non-coding downstream 605334 5018361 ~ 5018866 (-)
G136069 NA non-coding downstream 887394 4736549 ~ 4736806 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 5392 5652299 ~ 5652925 (-)
G136356 NA non-coding upstream 54274 5701181 ~ 5701475 (-)
G136368 NA non-coding upstream 213046 5859953 ~ 5860623 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding upstream 402061 6048968 ~ 6050633 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding upstream 481591 6128498 ~ 6145661 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other downstream 25534 5591338 ~ 5598666 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 264131 5161206 ~ 5360069 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other downstream 594633 5024806 ~ 5029567 (-)
si:ch73-111k22.3 LOC107742221 other downstream 611620 5011381 ~ 5012580 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 1042103 4564356 ~ 4582097 (-)
G136357 NA other upstream 54772 5701679 ~ 5703911 (-)
zpax2 NA other upstream 277159 5924066 ~ 5931122 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 627847 6274754 ~ 6302976 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 764055 6410962 ~ 6414013 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other upstream 785855 6432762 ~ 6451499 (-)

Expression


Co-expression Network