rab32a (rab32,rab32a,LOC107679502,LOC107601480,LOC107696121,LOC107726484)


Basic Information

Item Value
gene id rab32a
gene name rab32,rab32a,LOC107679502,LOC107601480,LOC107696121,LOC107726484
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16799760 ~ 16814144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219428.1
GGAGAGGGAGCGTGTGCTTTCTGTTTGAATACTTTCCTTACTCGCGTCTCCGAACTCAGAGCACTTCTCCAAACTGTGTGAGGGAGCGGAGGGGAAGTGGTTGCTCAAAGTTGCCAAAACTTTCCTCTCTCATAACTGACATTTGGCAGCATGGCAGGCGGGTCTGTGTCGGAGTGTAAGGAGTATTTGTTTAAAGTTTTGGTAATCGGGGAACTTGGTGTGGGAAAGACGAGCATCATCAAGCGATACGTGCACCAACTCTTTTCGCAACACTACAGAGCGACCATAGGAGTGGATTTTGCGCTCAAAGTCCTTAACTGGGACAGCAAAACACTAGTGCGGCTACAGCTGTGGGACATCGCAGGTCAAGAGCGGTTTGGGAACATGACCAGAGTGTACTATAAGGAGGCAGTGGGAGCGTTTGTTGTTTTCGACATTACACGAGGCTCTACGTTCGATGCGGTTTCAAAATGGAAGCACGATTTGGACAGCAAGGTGAAACTGGCCAATGGCAATCCCATCCCTTCTGTCCTTCTCGCCAATAAATGTGACCAGAAGAAAGATGGATCCAACAATTCCACACTTATGGATAACTTCTGCAAGGAAGCTGGGTTTTTGGGCTGGTTTGAAACATCAGCTAAGGAGAACATCAACGTTGATGAGGCTGCCCGGTTCCTGGTGGAGAACATCCTTCTCAATGATAAAGGTCTTCCATATGAAGAGAACAATGGAGACAAGATTAAACTGGACCAACAAACAGTGCCTGCTGAGAGCAAGTCCGGTTGTTGTTAGTGTGGATGTTCTTGCTTGTCCCATCATCTGACATGGAAAGGAGACCAGAGACCAAGCTCAACAAATCCCCCAATCCCGCCTCATCCCAAACCCTTACCACGGATCACAGAATAACCAGGGGTCAACAGTTTGTGCTCTAAAAGGGGAGAAGACATCACTGCCAAAGGACAGATGATCAGATGAAAACATCTGCCTGATGCTTTTAATTAccagtttttctctctctttctctcacactattgttttttgccatgtttgtcCTTTTAATAGCGTCAAGCAAGTTACTTCAGTGTGTGCTTGATGTAATATTGCTTAAAACGAATGAAACTACATGAGTGTCATAGGACCAGGCAAATACCAGTAAAAGTTCTTAGCCGAAATTAAATCTAACTAATGCCTTTGTCGCGGAGGGTGAGCTGTTTTAATGTATTCTGGACTATTTGCATCTGCTGCTGGGAATTTCCACCCTAAATTTTTACAGGAAAAGTTCTCAAGATGTCTCTTTATGGCAAAATAGTACATATTCCCAGGGCATTTAGTCTGTTGTGAAGATTCATGCATCACTCTTAAAGCTCTTACCACAAAATAATTggatcaagaaaaaaaaataaataaataaaatgaattgatgTCTAATAGAAGATCTGTAAGAGTCATGAGCCTAAGCATGTATATTTGTGGTTCGGAGagaaaattcatgtttttttcctcaggcttgtaaatgtaaatgttaaaatgtttattaattgttttttaattggtACTCAATGAGGGATCTGAGCATTTGCTCTGTCCATGGCTTTATTTTAGAATTACCTGAAGGCAAATTTTAATATGCTGGAACAAACTTTGTCAATTttccaaacaaatgtttttgaagtaaaaatgacagaataaaactttttaaactga

Function

symbol description
rab32a Predicted to enable GTPase activity. Acts upstream of or within notochord cell vacuolation. Predicted to be located in Golgi apparatus; membrane; and vesicle. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Is expressed in several structures, including Kupffer's vesicle; axial mesoderm; neural crest; retinal pigmented epithelium; and shield. Orthologous to human RAB32 (RAB32, member RAS oncogene family).
rab32 Enables several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Involved in several processes, including endosome to melanosome transport; melanosome assembly; and phagosome maturation. Located in several cellular components, including cytoplasmic vesicle; mitochondria-associated endoplasmic reticulum membrane; and mitochondrial outer membrane.

NR:

description
PREDICTED: ras-related protein Rab-32-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07918 RAB32; Ras-related protein Rab-32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219428.1 True 1704 mRNA 0.42 3 16799760 16814144

Neighbor

gene id symbol gene type direction distance location
adgb adgb,LOC107726608,LOC107601183 coding downstream 1283 16765715 ~ 16798477 (-)
stxbp5a stxbp5a,LOC107679494,LOC107696120,LOC107710208,LOC107726399,LOC108436475 coding downstream 39279 16691307 ~ 16760481 (-)
sash1a sash1,sash1a,LOC107732642,LOC107693212,LOC107696119,LOC107601490 coding downstream 109621 16520443 ~ 16690139 (-)
usta ust,LOC107732646,LOC107696116,LOC107726493,LOC107693205,LOC107601503 coding downstream 279990 16475351 ~ 16519770 (-)
hpcal1 hpcal1,LOC107549126,LOC107696114,LOC107726415,LOC108411356,LOC105909572,LOC107601527,LOC101077504 coding downstream 355929 16435221 ~ 16443831 (-)
grm1a grm1,grm1a,LOC107679500,LOC107696122,LOC107726479 coding upstream 561 16814705 ~ 16840062 (-)
cep57l1 LOC107679495,LOC107726623,LOC107601208,LOC107696099,LOC107726414 coding upstream 41151 16855295 ~ 16858610 (-)
armc2 armc2,LOC107679492,LOC107601205,LOC107696124,LOC107726616,LOC107726428,LOC107601411 coding upstream 82417 16896561 ~ 16911932 (-)
foxo3b foxo3b,LOC107679488,LOC107601202,LOC107726619,LOC107601425,LOC107726429,LOC107696126 coding upstream 107494 16921638 ~ 16947178 (-)
afg1lb lace1b,LOC107679503,LOC107726636,LOC107601203,LOC107726402 coding upstream 135285 16949429 ~ 16970041 (-)
G139032 NA non-coding downstream 344357 16454884 ~ 16455403 (-)
G139029 apobb.1,LOC107693214 non-coding downstream 347867 16450526 ~ 16451893 (-)
G138983 NA non-coding downstream 474007 16323406 ~ 16325753 (-)
G138960 NA non-coding downstream 583044 16214344 ~ 16216716 (-)
G138956 NA non-coding downstream 591759 16207070 ~ 16208001 (-)
G139139 NA non-coding upstream 29074 16843218 ~ 16845168 (-)
G139145 NA non-coding upstream 36410 16850554 ~ 16946540 (-)
G139147 sesn1,LOC107601204,LOC107679493,LOC107601436,LOC107696127,LOC107726620 non-coding upstream 45199 16859343 ~ 16860256 (-)
G139149 NA non-coding upstream 46182 16860326 ~ 16896383 (-)
G139148 sesn1,LOC107726430,LOC107601436 non-coding upstream 75795 16889939 ~ 16891460 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 337544 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 432961 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 695033 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 806115 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 955186 15844354 ~ 15844574 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 532662 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 987258 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 1529319 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 1591883 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 2440590 19254734 ~ 19256272 (-)

Expression


Co-expression Network