thbs1b (thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445)


Basic Information

Item Value
gene id thbs1b
gene name thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15078974 ~ 15089573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219438.1
tagCACTTTGTTCTCTTTGGTAATAGTTAGATTGGCTACTTTAACTACGGCAAAGAAACCCCGAGTGCTGTAGACCGCGGTTAAACAGAaaaatcatttctttattttaaaacgaCCTTTGATTGACGCGTCTTAGGAATTATATCGCTTCGCCTTGGATTTGCCGCTGTTTTAAACACTCGGAAGGTGAAAGAATAAGTGATAAAATGAAGTCAACTGCAATCTTTTTGCTACTGATGCTTTGGAGCTGCGAGAGCGCGAGAGTCGCAGAAAGCAGAGACGACAACAGCGTTTACGATCTGTTCGAGCTCGTCCAAGTACCGAGGAAAAACCACGGGGTGACTCTGGTGAAAGGCGACGATCCGTACAGCCCCGCCTACAAAATCCTGAACCCCGACCTGATCCCCCCGGTTCCCGAGAGCGCCTTCAGGGACCTGATCGATTCCATCCACGCGGAGAGAGGATTTCTGCTTCTGCTCAACTTCAAGCAGTTCAAGCACACGAGAGGAAGCCTTCTGACCGTGGAGAAGAAAGATGGCTCCGGACCCGTCTTCGAAATCATTTCCAACGGGAAAGCCAATACTCTGGACATCGTTTTTTCCACCGAAAATAAGCAACAGATCGTGTCCATCGAGGAAGCCGATTTGGCCGTGGGACACTGGAAAAACATCACGCTTTTCGTGCAGGAAGACAGGGTTCAGTTCTATGTGGGATGCGAGGAGGTGAACACGGCGGAGCTCGATGCTTCCATCCAGACTATCCTCACTCAGGAGACCTCAGGTGTGGCGAGTCTGAGGATCGGAAAGGGCGCAGTGAAGGACAGGTTCATGGGGGTGTTGCAAAATGTGCGCTTTGTGTTTGGTACCACACTGGAGGCAATTCTGAGGAATAAAGGATGCCAAAACACAATTATGACTGATATCATCACCCTTGACAATCCCATAAATGGATCCAGACCTGCAATCAGGACTGATTACACTGGCCACAAAACAAAAGATCTGCAGATGATTTGTGGCTTTTCATGTGAGGACCTGGCTGCCATGTTCAAGGAACTGAAAGGTCTTGGTGTGGTGGTGCAAGAGCTGTCCAATGAACTCCGCAAAGTGaCAAATGAGAAAGACATGCTTATGAATCGTATGGGAATTCACGCTGGCGTCTGTCTTCACAATGGAATTGTGCACAAAAACAAGGAGGAATGGACAGTGGACGATTGTACAGAGTGCACTTGCCAGAACTCTGCAACGGTATGTCGCAAGATTTCATGCCCCCTAATCCCATGTGCAAACGCCACAGTGCCTGATGGGGAGTGCTGCCCTCGATGTGGAACACCGAGCGACTCCGCCGAGGATGGCTGGTCCCCCTGGTCTGAATGGACCCATTGTTCTGTGTCCTGTGGAAGGGGCATTCAGCAGCGCGGCCGCTCCTGCGACCGCATCAATAACAACTGCGAGGGCACGTCGGTGCAGACGAGAGACTGCTACCTTCAGGAGTGTGACAAGCGCTTTAAGCAGGATGGCAGCTGGAGTCACTGGTCACCCTGGTCTTCCTGCTCGGTCACCTGTGGTGCTGGCGTTATCACACGCATCCGTCTCTGCAACTCCCCAACACCTCAAATGGAAGGCAAAGATTGCCAGGGTGAAGGTCGTCAAACTGAGAGGTGTGAGAAATCACCATGTCCGATCAATGGAGGCTGGGGACCGTGGTCGCCCTGGGATGCGTGCTCAGCCACCTGTGGCGGTGGAGTCCAAAACCGTAAACGTCTTTGCAATAATCCAATACCCATGTATGGTGGCAAAGAATGTGTGGGAGACGCAAAGGCCAGCCAGATTTGCAACAAACAAGCCTGTCCAATCGaCGGATGCCTTTCAAATCCGTGCTTTGAAGGAGCCCAGTGTACAAGCTTCCCAGATGGCTCTTGGAAATGTGGAAAATGCCCTACAGGATACACCGGCAATGGAATCAACTGCAAGGATATCAATGAGtgtaaggAAGTCCCTGATGCCTGTTTTGAATTTAATGGAGTCCACAGGTGTGAGAACACAGTACCAGGCTACAACTGCCTGCCTTGCCCCTCACGCTACACCGGCCCACAGCCATTTGGTCGAGGAGTGGAGGATGCTGCTTCCAAGAAACAGGTGTGCACTCCTCGCAATCCCTGCCTCGATGGAAGCCACGACTGCAATAAGAATGCTCGCTGTAACTACCTCGGCCATTTCTCAGACCCTATGTACCGCTGTGAGTGCAAACCTGGCTTTGCAGGAAATGGACACATCTGTGGAGAGGACACTGATCTTGATGGCTGGCCTAATGCTGATCTAGTGTGTGTCGAAAATGCAACCTATCACTGCAAGAAGgACAACTGCCCCAATCTTCCTAACTCTGGGCAAGAGGACTATGACAAGGATGGAGTCGGTGATGCTTGTGAtaatgatgatgacgatgatggcATTCCTGATGACAGGgaCAACTGCCCACTCATCTTCAACCCAAGACAGTACGACTATGATCGTGATGACGTGGGAGACCGCTGCGATAACTGTCCATACAACAGCAACCCAGACCAGACCGACACAGACAACAATGGTGAAGGTGACGCCTGTGCCGTGGACATTGATGGAGACGgtattttgaatgaaaatgacaaCTGCCCATATCTGTACAACGTCGACCAGAAAGACACCGATCTGGACGGAGTTGGAGACCAGTGTGACAACTGCCCTCTGGAACACAACCCAGACCAGCTCGACTCAGATTCTGACCGCGTCGGAGACAAATGTGACAGCAACCAGGATATTGATGAGGACGGTCACCAAAACAACCTGGACAACTGCCCATATATTCCCAATGCTAACCAGGCTGATCACGACAAGGATGGTAAAGGAGATGCTTGCGACTACGATGATGATAATGACGGCATCCCTGATGACAAAGACAACTGCAGATTGGTTCCCAATAAAGATCAACTGGATTCTGATGGCGATGGACGTGGTGACGCCTGTAAAGATGACTTCGACCAAGACAATGTCCTGGATATTTATGATGTCTGTCCTGAGAACTTTGACATCAGTGAAACAGACTTCCGCAAATTCCAGATGGTTCCTCTGGATCCCAAGGGCACTTCCCAGATTGACCCCAACTGGGTGGTTCGTCACCAAGGAAAAGAACTTGTTCAGACAGTCAACTGCGACCCTGGCATTGCTGTTGgttttgaTGAGTTCAATTCAGTTGACTTCAGTGGAACTTTCTTCATCAACACTGAGAGGGATGATGACTATGCCGGCTTCGTTTTCGGATACCAGTCCAGCTCTCGCTTCTATGTGGTCATGTGGAAGCAGATCACACAGACCTACTGGTCCAGCACACCTACTAAGGCACAGGGTTACTCAGGGCTGTCAATCAAAGTGGTTAACTCCACCACAGGGCCAGGCGAACATCTGAGGAACGCCCTGTGGCACACCGGAGACACTCCAGGACAGGTGCGCACTCTGTGGCACGACCCAAAAAATGTGGGATGGAAAGACTTCACTGCTTACAGATGGCATTTGACTCATAGACCAAGAACTGGACACATAAGagtGGTCATGTATGAAGGCAAAAAGATCATGGCAGATTCTGGAAGAATTTATGACAAAACATACGCAGGTGGAAGACTAGGTCTCTTTGTTTTCTCACAAGAGATGGTGTACTTCTCAGACCTCAAATATGAATGCAGAGATGCGTAATTGCACAGGCAGGAAGTTCATCAAAGAATGCACCTTtccatataaatatgtattccAGGCAAAGTCCAGGGACAGATTTGACTCTACTTTTTCTGCTGCCGCTCACACACTGGTGGAGTTAGAAAGCAGGTAGTCAATTTCAATGTAACTGCCACTGGTTGGGATAGAAACCAAGCGGCTTCTGATTCAGAATCTGGACTCCTCCACCATTAGCAGGTAGAGCAGAAGAAAAGTCTCCCTCTCTTTGCTTAATTGGGAAGACTGCGATCTCTTTCTGGAAAACCTCATTCGGCTCTGTGTGGGAAGAGCTCCCAACAGACAGCTATGCACTTCAAAAACTTTACTCTCTCTCATGTGTTTTCATTCTCTCTTGAAAAGCTGTCCAAATTATGTCTCCATTAGAGAGAGCGcaacccttttaaaaaaaagtttgcttttataatattcagtattttataaGAAATTTGTAACTGTTTTTCTTGACTAGAAACAAAGCGTTGTGAATGTTTAAGATTTTGAAGCAACAACTAATGGtttaaaaacattgaataaGTAAAAGAATACTATTTTTGTATTCCAAGCAGGTGATTTTAGAGGACAGATCTGTTGTTTATTGATGTTTAtctaaatttttgttttttcgcTTAGCAAAGACACATCTTAAGTATCATGAACATCCTTTAAGGTCTGGCGGGAGATAACTTATGGTTTAGCGGGCATAGTTTTCTCAGGGCTAGATGgttaaaccattttaacatattCATTAGAAATGGCAAAATGAAAGGTTGTATGAAGAGGAATTAGACAGACCAAGGTTTAAAGACTCGCCACATCTGGATACTAGATTACCAAGTACTCTAGTATGAGGTTTTATTTGAGATGCTAATTTCTAAGGGAAAGATCCTTTTAGactttttctatatatatttatgtagcacttacaaaacactttttgagTTTGGCAAGACTGTGCTGTGATTTTgcttaaaaaagcaaaagcgAGGGAATTTCTAAAGACTGCCCTCACTAAAACAactatttcaacatttacaagaaaaataaactctCATAACCGATGTTCTGTCTAAAACTACTCATCCAAACCTTTCCGGTCAAGAACCGTTCATCCTTCATTTTCAAAGGAGATGATCTTCTGACCTGATTGCCTTTtctgtagagagagagataaaggaagactttaatgtacaaatattaCCTCATTGCTGTTTTGTAATTTGATCGAGCGAAAGCTTTTTCCTTTGCTTCAAGAAAACAAATTGGTTGCTTTATTGCTACTGTAGCACAAGTTGTAAATAGTATATAGAACAAACAGCCAGCCCCAAATTCCAATGGAAAATAgagtaaaacacacatttttttaaggaatacaTTTGCCAGTGCTTCAAATGTCCAGTACTTTTTTTAAGTTGataaattattgctttattgttgtctttgtttgtaagactgtttcatttgtgtgtgtagataaatgctatttaaataatttatcatgGAGTGCCACCTGAGGCATTTCCATCTGTATAAACAGTTTGCACACTGACGTGAGGATGTTCTGTTCTTCATTGTTTGTATCtttgtgttgttatttttgtacaattAGTGATGCTtgactgtaaacatttttacttaGTTACACAAtgcaaaatgctatttttacGTATAGCGATTATTTTGGTACATACTTCAGAATAATAAACAGATGATAGACGTTGTAAAACTGA

Function

symbol description
thbs1b Predicted to enable calcium ion binding activity; extracellular matrix binding activity; and heparin binding activity. Predicted to be involved in negative regulation of angiogenesis. Predicted to act upstream of or within cell adhesion and inflammatory response. Predicted to be located in extracellular space. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including axial vasculature; head mesenchyme; nervous system; pectoral fin; and somite. Human ortholog(s) of this gene implicated in cholangiocarcinoma; pancreatic cancer; and pancreatic ductal carcinoma. Orthologous to human THBS1 (thrombospondin 1).

NR:

description
thrombospondin-1-like

GO: NA

KEGG:

id description
K16857 THBS1; thrombospondin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219438.1 True 5467 mRNA 0.45 23 15078974 15089573

Neighbor

gene id symbol gene type direction distance location
susd6 susd6,LOC107721312,LOC107756599,LOC107549087 coding downstream 42087 15015837 ~ 15036887 (-)
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding downstream 94118 14976262 ~ 14984856 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding downstream 107684 14907899 ~ 14971290 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding downstream 175479 14846009 ~ 14903495 (-)
wdr21 dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145 coding downstream 265472 14808533 ~ 14813502 (-)
chrm5b LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776 coding upstream 76833 15166406 ~ 15175414 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding upstream 96139 15185712 ~ 15252625 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding upstream 186534 15276107 ~ 15278071 (-)
LOC122325338 scg5,LOC107549096,LOC107721307,LOC107756590,LOC107601900,LOC107668261 coding upstream 188645 15278218 ~ 15280428 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 191429 15281002 ~ 15284293 (-)
LOC122324712 NA non-coding downstream 235238 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 285265 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 500073 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 553951 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 650722 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 233999 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 242228 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 281035 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 427270 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 594603 15684176 ~ 15711053 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 63705 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 75772 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 633049 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 880446 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1311150 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 752825 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 753325 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 753836 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 754781 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 900576 15990149 ~ 15993645 (-)

Expression


Co-expression Network