tnfrsf21 (tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348)


Basic Information

Item Value
gene id tnfrsf21
gene name tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18453708 ~ 18473259 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219440.1
AGGCCCGTGATACGGCGCGCGGCGCAGACGAGCAGCCAGTGGCGAGTTTCGGTCGTGACGTGTGTCGCCAGTACCCGCCCATCATCCGCAGCCCGTCTTCTTTGCGGCACAGGGAATCCGTAACCTGGACAAACGGCAGCCAGACTTCAGTCCACAGATCCATCCATCATCGCTATGGGAATTATAGCGTTCTTCTTCCAAAACGAAGCGCTTATCCCCTACTACTTGAAACCCGTGCACGCCGGGGCACAGACTATAAAAAGGCGTCAGTGGACGGAATTCGTACACTGAAGGAATAACCCAGCAAAAGGGACAATACCTCACAACAATGTGGGTGTCCTGTTGATGCGGAGATGCTGATGCTCCACCTATGAAGCCACCTATGAAGTAACAGATGTGGACCTGGGCATATTTAAACAAGAGTGATTCCGCAGGGACAATGCCTGGGAAAATGTCTTTGACTTGGTCGCTGATGATGCTGCTGTTCACTGCGGTCAGTGACGTCCTAACCCACACACTGACCCCCAGCACGACCACAGAGAAGCCCTTGTCCCCTCGACACTACCGCCACACCGACCAAGCTGGAAACAAGCTGGTGTGCGACAAGTGTCCGGCGGGCACCTACGTGTCCTCCCACTGCACAGAGGCCACCGTACGGGAATGCAGCCCCTGCCCGGACGGCACCTTCACCCGGGGCGAGAACGGTGTTCAACAGTGCCACGCTTGTCAGAGACGCTGCCAAGCCCCATTTTTCGAGAAAACTCCCTGTACGTCCACCACCGACCGGCTGTGCGTGTGTCCTCCGGGCAGCTTCTCCCAGGGTGGAAAGTGTCAGCGGCACTCATTATGTCCACCGGGGTGGGGCGTCCGAAAGCGAGGAAGTGAGACAGAGGATGTGCGCTGCCGGCCATGTCAGCGTGGCACCTTCTCCGACGTGGCATCAAATGCTCTGAGGTGCCGATCTCACACAGATTGCTTGTCTCTTGGCTTAACGCTGCTGATCAAAGGCACAGAAAAGACAGATAGTGTGTGCGGGCCAACTCCAGCCAGTTCGGTCTATGTCCTACTTGGAGAGGCCTCCGTTTCCACGGTTTCCAGCACTGAGTCAGCATATAGAGCAAGCACTGCCGTTTTACCAGTTACAGAGATTCAAGAAGTAGCCGGGTCGGTCCTCAGTAGCACAGAAACGGCCCTCGACGCTGAAGAAGACATTCCAACAACCACAACCACAACTTCCTCCAAGACTAGTGATGAGGATGGTGGACTCTTAATCGCTGCAACTCAGGACCTCCCTAAATTGCAAAACAAGTTTTCCTCATCACGAGACCCCCAGGTTGCCAATCAACAGGCCATGGAGACTCTGTCTGAGGGCAAGGCCCAAGGTTTGGGGTACCGGCCCATCCGCAGAGGTGCACCGAGGCCTAGCACGCACAAGCACTTTGACATCAATGAGCACCTGCCTTGGATGATAGTCCTGCTGCTTCTGCTGGTGCTGGTAGTGATCGTGGTATGCAGCGTAAAACGCAGTTCACGAGTGCTGAAGAAAGGTCCTAGACAGGATCCCAGCAGCATCATGGAGAAAGCCATCCACAAGAAGCCCAGCTCTCCTGCGCAGACAAAGGAGAGGTGGATCTACTACTCAAATGGACAGGGTGTTGACATCTTGAAGCTGGTGGCAGCACAGATTGGCAGTCAGTGGATTGATATGTATAAGTCTCTGGCCAGTGCCACCGAGAGAGAGGTGGCCGCATTTTCCAACGGCTACTCGGCTGATCACGAGAGGGCATACGCTGCTCTTCAGCACTGGACCATACGCGACAGTGACGCCAACCTGGCTAAGCTGATCAATGCCCTTCACCGCCAGCGCCGCATCGACGTGGTGGACAAGATACGTAGTGTCATGGAAGACAATCCTCAGGTCGACCTGAACAAGCTAATGACGGCTGTGAATGTAAGCCATTGTCTGAGCCCCAGCCATAAGCCTTTCGAGTCACCCGGTGTGGTGCTGGAGCAGTCCCCCATGGAGCGCACCAAGGGATTCTTCACCGACGAATCAGAGCCTCTGCTGCGCTGTGACTCCACTTCCAGCAAGGACTCTGCCCTCAGCCGGACAGGCTCTTTCATAACCAAAGAGAAAAAGGACACGGTGCTGCGGCAGGTGCGTCTGGACCCATGTGACCTGCAGCCCATCTTTGACGATATGTTGCACATTCTCAACCCCGAGGAGCTCCATGTTATCGAGGAGATCCCGATGGCGGAGGACAAGCTGGACCGCTTGTTCGAGATAGCAGGGGTGAAGAGTCAAGAAGCCAGCCAGACGCTGCTCGACTCGGTCTACAGCCACTTGCCTGACCTTCTTTAGACCACACCTCACTATACAGAAACAAAGTGATGGACACACAGATGTGCACTCACTCCGTTCCATTGTGTCACTCGATGACATGCACGTAATCTTAAAACCTCTGGAATGCTCAGACAGGAGTTTATCTGCAATTGAAAGAAGCGTTCTCTTGTTTGTGAGCTCTTGACTGGATACAGCTGGTGTCAATGCTATAACCTCTCTAACATGCAGCATATTCTTGCACACATCTCAGCATGATGTCTAACTCAAAGCTATACGATGTAATTTATGAACCGATTTTGTAAATTGTTAAATCAAGCTTTTAGTCCTTTGATGTTATgttacaatgtgtttttttttttattactacttACAGATTAACGCATCCTAATCAGCAAAGTATTTTTGTTCCCTTTGTTTGTCCTTTTTACGTTCTCAAGTATTACcactgtagctttttttttagatgctaattttgtgttttatgtgattTCAAGGGCATTGAAAATCATTCCAACTGGTTATGATAGTAATCGGTGGATTATGTGCATTCACTATACGACTCTCAAAATAAGCTCCGTCTCCATGTGCTTTTCCAATAAAATAGGGCAAAAAGCAAGTATGATCGCTACGTAATTTCACACAGGCTAGAGTACCaccaaaaaaagtcacatttaaatgtagcattacagTATTGATTTTGCAGATGACGATATGTAGTACAGAGAGAATGTCTCTGTTCAACTCTGTTGAAATCAAGTCACTCTGGTGCTAGATGCTAAACTATGGGATAGTGGTTGATTTTATCCCAATAACAGGGTGTTTATGGTCATTTGACCgatgaactttaaaaaaaaaaaaaaatgggtcaaAACGAAACAGCAGCTGTATTAACTCTCCTGGATCTGAGGAAGAGCGACAGATGAGCTGTTTGGACAGAATCACGGAGTGGAAAGCTAATATGTATTCTAATGGCTGTTTTAAGATGTAACACATGTAACcaagacatttattattattgataattatcATGTAACCTGGGAAATCAACAGATTAAAGTCTTTTGTCATAA

Function

symbol description
tnfrsf21 Acts upstream of or within establishment of endothelial blood-brain barrier and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; forerunner cell group; and pronephric duct. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21).

NR:

description
tumor necrosis factor receptor superfamily member 21-like

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0014045 establishment of endothelial blood-brain barrier biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K05157 TNFRSF21, DR6, CD358; tumor necrosis factor receptor superfamily member 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219440.1 True 3413 mRNA 0.49 6 18453708 18473259

Neighbor

gene id symbol gene type direction distance location
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding downstream 6336 18431833 ~ 18447372 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding downstream 22028 18419791 ~ 18431680 (-)
LOC122325499 LOC107683600,LOC107601464,LOC107578785 coding downstream 36932 18409158 ~ 18416776 (-)
LOC122325498 adgrf6,LOC107683600 coding downstream 44599 18405803 ~ 18409109 (-)
LOC122325497 adgrf6,LOC107683600 coding downstream 47889 18401166 ~ 18405819 (-)
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding upstream 55179 18528438 ~ 18555294 (-)
LOC122325333 spats1,LOC107553422,LOC107736684,LOC107601458 coding upstream 131392 18604651 ~ 18607543 (-)
si:dkey-1j5.4 si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529 coding upstream 188250 18661509 ~ 18669079 (-)
lbr LOC107732420,LOC107553478,LOC107698344,LOC107601526,LOC107732539,LOC107690042 coding upstream 197693 18670952 ~ 18679703 (-)
enah enah,LOC107732530,LOC107601525,LOC107732354 coding upstream 207634 18680893 ~ 18733506 (-)
LOC122324299 NA non-coding downstream 1576 18449944 ~ 18452132 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 41854 18405804 ~ 18411854 (-)
G139704 NA non-coding downstream 111378 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 112525 18340729 ~ 18341183 (-)
G139701 NA non-coding downstream 113464 18340029 ~ 18340244 (-)
G139790 NA non-coding upstream 125435 18598694 ~ 18598912 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding upstream 154048 18627307 ~ 18634666 (-)
G139801 NA non-coding upstream 196179 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 351621 18824880 ~ 18829799 (-)
G139871 NA non-coding upstream 567531 19040790 ~ 19043914 (-)
G139706 LOC107683600,LOC107601464 other downstream 6759 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 103586 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 629507 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1025585 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1991492 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 781475 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 788207 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 824975 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 1128273 19601532 ~ 19615202 (-)
G140227 cad other upstream 1584365 20057624 ~ 20059603 (-)

Expression


Co-expression Network