rpl7l1 (rpl7l1,LOC107689455,LOC107690050)


Basic Information

Item Value
gene id rpl7l1
gene name rpl7l1,LOC107689455,LOC107690050
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18781603 ~ 18784598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219448.1
CTATAGTGAATCGTAATACACACTCCAAAGCGCAAGGCGACAGTATTACAAAAATAGACGCGGAGGCACAACGTCATCTCCGTGCGACGGAAATAGTCACAGCAGACGAGATGGCAGAATCAGGAACGGAGAAAGTAATCAAGCTTGTTCCTGAGAATCTTCTTAAGAAACGCAAGGCCTATCAGGCCATCAAAGCTACTCAAGCCAAACTTGCTTTACAGCAGAAGAGAAAAGTCCATAAAGGGATACCCTTGAAGTTTAAGCGCTTGGAGGACTTTTTGAAAAACAGCAAGAGGAGGAATCGAGATGAGACCCGACTTGCCAGACTCAAACACAGACCTCCTCCGCCCCTGCCCCCTGCAAAGAACAACCTGGTGTTTGCTGTTCGCATCAGAGAGATCAAAGGTGTGAGCCTCAAAGTAATGAAGTCCATTCAGATGTTAAGGCTGAGGAAGATCTTTAGCGGCACCTTTGTGAAAGTCAGCAAGACTTCTATTAAAATGCTTCAGACAGTGGAACCGTACGTTGCGTGGGGATATCCCAACTTGAAATCAGTCCGTGAGCTTATATTGAAAAGAGGTCTGGTAAAGATTGGCAAGAAAAGGATTCCTCTGACCGACAATACACTCATCGAGCAGCATCTTGGACAATATGGCATAATCTGTTTGGAGGACCTTATTCACGAGATCTATTCTGCTGGGAAGAACTTCAAGGTGGTAAACAATTTACTGTATCCGTTCCGTTTGTCAGTACCAAGACACGCTGCTAAAGACAAAGTTGGACTGCTGAAAGATGTTGGTGTTCCTGGACCCAGAGCAGAAGACATAAACTCAGTCATCAGGAAACTCAACTGAGCTAATAGACTTTCATGGACTGCTGTTGTCACCTTCCTTCAGATTACCCCAGCAAAAATTATaaaggaaaaaattataaaccatTACAATGGAATGTTCAGTTTAATTGGACATTCCCTGATAATTTTGTTCTCGACCATGGCATAGATGACATAACATTTGGGGAAACATGCATGGCAGTGTTTCTGTgtaaaacaaatctttatttccttgtctgtaaagtttttttccttgacatttttaataaactgcaaaatttca

Function

symbol description
rpl7l1 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human RPL7L1 (ribosomal protein L7 like 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219448.1 True 1115 mRNA 0.42 6 18781603 18784598

Neighbor

gene id symbol gene type direction distance location
slc5a6a slc5a6,slc5a6a,LOC107553475,LOC107689456,LOC107690043,LOC107601523 coding downstream 1896 18766159 ~ 18779707 (-)
enah enah,LOC107732530,LOC107601525,LOC107732354 coding downstream 48097 18680893 ~ 18733506 (-)
lbr LOC107732420,LOC107553478,LOC107698344,LOC107601526,LOC107732539,LOC107690042 coding downstream 101900 18670952 ~ 18679703 (-)
si:dkey-1j5.4 si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529 coding downstream 112524 18661509 ~ 18669079 (-)
LOC122325333 spats1,LOC107553422,LOC107736684,LOC107601458 coding downstream 174060 18604651 ~ 18607543 (-)
ptrhd1 ptrhd1 coding upstream 45826 18830424 ~ 18831573 (-)
slc25a27 slc25a27,LOC107710953 coding upstream 48797 18833395 ~ 18840324 (-)
txlnba LOC107689450,LOC107710955,LOC107675104,LOC107558940,LOC107553470,LOC107727608 coding upstream 61797 18846395 ~ 18864036 (-)
cited2 cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469 coding upstream 87067 18871665 ~ 18874009 (-)
nmbr nmbr,LOC107553439,LOC107727594,LOC107689462,LOC107675069,LOC107717045,LOC107558933 coding upstream 216245 19000843 ~ 19010179 (-)
G139801 NA non-coding downstream 110670 18669438 ~ 18670933 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding downstream 146937 18627307 ~ 18634666 (-)
G139790 NA non-coding downstream 182691 18598694 ~ 18598912 (-)
LOC122324299 NA non-coding downstream 329471 18449944 ~ 18452132 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 369749 18405804 ~ 18411854 (-)
G139823 NA non-coding upstream 40282 18824880 ~ 18829799 (-)
G139871 NA non-coding upstream 256192 19040790 ~ 19043914 (-)
G139903 NA non-coding upstream 375240 19159838 ~ 19160157 (-)
G139940 NA non-coding upstream 439782 19224380 ~ 19250790 (-)
G140152 NA non-coding upstream 550481 19335079 ~ 19341060 (-)
G139706 LOC107683600,LOC107601464 other downstream 334654 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 431481 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 957402 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1353480 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2319387 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 470136 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 476868 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 513636 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 816934 19601532 ~ 19615202 (-)
G140227 cad other upstream 1273026 20057624 ~ 20059603 (-)

Expression


Co-expression Network