themis (themis,LOC107653154,LOC107757674,LOC107740538,LOC107660546,LOC107554148,LOC107576180)


Basic Information

Item Value
gene id themis
gene name themis,LOC107653154,LOC107757674,LOC107740538,LOC107660546,LOC107554148,LOC107576180
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 287735 ~ 295803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219452.1
TAACAGCCAAAGAACCTTTCTGTGAAGCAAGGTTCTTCCGACTGATACAAAAAGAggtggttctttgtggaaccaaaaacgGCTGTGAGGAACCTTTTCAGCTCCTTTAAAGGTTCTAAGAGCGTGAGTCGTTTCAGTGATTTGGATCCCTGTTGTTTTGACTTGCATTAGGCCCTGATGTCATGAAGTCAGGCAGAGGATGTGGGATTTGTGTATGTCATAGTATTTTTGCAGATACCCGGTGCAGCTCTGCTTGACAATGCGTTGAGTTGTGGTCTTTGAGCTGTACTTGGCTTCCTGTCCTCCTCCGCTGAGCAGGATGCCTCACATTGTCGTTGTCGGTCTGCGCTGCTGAGCTCGAGGGGCCTCTGGAGGGGCCAAAGGGCATCCTGGGACTTCCTCTGCCACCCGGCCCTCCATTAACCCTCTTACTGGACCTTTTATGGCTTCGTGAGGGACAGAGCCTCGTCTCTCAGCCCTTCCAGAGCTTTAAAAGCGTACAGGCGCAGCAGAAGATGGCTACGACGCTGCATGAATTCACGCAGTTTACGGATCCTAAGATGTTCCCCAGAGTTCTTCAGATCCAGTCGGGAATATATTGTCAAGGTAAGAGTAAAACTGGGGCCGTTCATTCATCTGCTCTTCGTGGGAAAATAATAGCTgtTGCATTATCTGAGATGTTTGGAAGAGAGTGCTCTCTTTCGACAGGAGATTTGCTGAAAATCATTGATATCACCATCACCAGGTTCACTGCTCGGACCTCCAGCAAAACTGAGATCGAGATTCCTGTGGAATATCCAGGATTGTTCAAGCTAGTGGCCGACAGTCAGCCGTATCGCAGCATACAAGAGATAGCAGACTCGGTGAAGATCAGCCCCCACAGACTGTCCCAGGCGGTGTTCCTCAGCGGTTCGGAGGTTCAGCTGGAGCAAGGCGTCATACGGGAAGGGGACAGCTTCAGAGTGACGTCCGTCTCCCGTGAGCCCGGCGGTGGACGAGTGCTGTGTGAGCTGCTGCACAGAGAGCCCAAGACCTGCTTCAGCCTGAGCTTCTCCCAGCAAGGACACTTCACAGAGAGCCAGGACGACCAGTTTTACACCCTGAGAGAGATAGCCGAGTGGAAGATCTCCAAAGGCAGGACGAGGACTGTAACCGAGGTCAGAAAACTGCCCAAGAAGGACTTATTATTCTCACATTTGCTGGAGAATGTATTTGGAGAGCTGAAGCTGACTCCTGTGTATGAACTGAAGGCTGTTACGAGAATCAGTGAGAAGATTCTGCTCATCCCGTCAAATCTGGACGTGGAGGTGGTGGACGTCACCGAGCAGTTTGATTGTGACTCCTTTGtgcagcctctctctctcacggACGTTAAGAGTCCCCCAGAGTTTTTTCCCGTGGTGGCTAAGTTGTCGTGCGAAAGACCCTTCAAGCTTTCTTCGGAGCTGGAAACACTTTTCCAATCCAGTCAGGTGATCGTTCATCATGCTTTCTACGCCAAACGAATTCTGGCCTCGGAAATGGGTCGTGAGTCGACGAGACACTTTCTTATCCCGGAGTCCTACAACGGACGCTTCAAGCGGCGGCCGCGCCAGTTCCCCACGGCCTACGACCTGGAGCGAGCACGCAGCCAAACCGAGCAGATCCGGGTGGTGGCCACCAGAGAGTTTGAGTCCGTCTACAACGGCCTGGCCTCCGTAAATGCCGGAGACGAGTTCATAGTGACCAAAGGCAAGAGCTGCGCGTCACACAATGGAACCAAGAGTTCAGCCGATGCTTTTCAGTGTCTGAAAGTCACAGGGACGGAGGCGAAGGAGCCGGTGCGCCTCCCCATGTGTTTGGAGGGAGCATTCATGGAGCTGGTGAAAGACAAGCGGCAGTACACCGTTGCGGAAATATGCCAATGGTTCTCGCTGCCCTTCAACGTCAAAGTGTCCGTGCGAGACCTGTCTCTAAAGGTGGACGTTTTGGCTGGCTTGCCCGGTCTGCACATGGAGGAGGAGATCTCTGACCCCTGCCTCCTCATTTCAAACGCTGACCTGTCAGAGATCAGGGAGGTTCCGGTCAATCGCGCAGACCTGATCCTCAACATAAAGCATCGCTGGGATGGCCAGAGTCCAGTGTGTAGCAGGAGCTCAGTCGTAGAGGAGATCTCAGAGGACTGTTACTACACACTCAGGAGGTACGCCGTTACTACCATCACACCCCCTCCACGGCCTCCCAAAAAACCCAAAGAGCCTCCCCCTCGACCCCCCAAGATGCTGTCGTCCAGATCTGAGAGCGCCAACAGCGAAAGCTCCAGCTGCTCTCCACAGAGTCTTTGTGGCGAACCGTTTAAGCAAGACGACTTCATTCAATGCAGTGATtcaaaaaatggaagacaAAAGATCGTCGTTAGTCCCGTCGCTTTGCCAAGACCCCTGAAGAAAGATCTCGCCAAGGGCCGAAGTCTGGACAACGTATCCATCACACAAAATGAAGATGATGACAACGATGTGCACGATTATGAATATATCGATGAAGATCAGATCGACAGCATAAGGAGGACATACAATGAACAAAACGTTAAGACGGACAAAGGAAAACCGAGCAACACGATATAAGAGTCACTAAACCCACTTACTTTCACTTCACATGATGAGACCGACGTCACGCAACTTTACATGAATGCAGCTCATTTATTAGGGGAAGGTCTTCTGTGCTTATTAGTCCTGTAGGAGTACAGACACCAGGTACGCATCTGTTTTTTGTCTTCGCATGAACCGGGTGAAGTACACCAGTTCAGAATCATCTTTGGTCAGTCGATGGTTGATGGTCTGCATGTTATATATTCATTCAAACGCTTTGTTTTTTCTAAGGTCCATTAGATATTATGGTGCTTATATGAACTGGTATACTATCCGTTATGAAACCGTAAGTACAGTAAGCGAgttttatacatgtattttagtCCCTGAGGTTTCGGTCCTCGTATCTCTCCAGGCTGCAGCTCTTTTCGGTGACCATGGCTTGTGGATCATGTACTgtccaaaaaaatgaacaaaaagctATCACTTTTATACCCTATTTATTTAATGGTTCTTGTTAGTAttacaatactaatattatttCCTAAAATATTAGCACCTTTGAAAAGGGCAGTGCCATAGTGACCACTATTTTTAAGTAATGATGTCAGAGAAACCAACCTTCGTTAACTTAAGTATATATTAATTGAGTTTTTTGTACAGTCTGGTTATACGTAGAGTTGAAAGTGGGTTTATGTTTTACATAATTGTGTGAAGAAggacattttctgcattttgtcTGGTCTACTTTGAATAAATGAGATGGAAAGTA

Function

symbol description
themis Predicted to be involved in T cell receptor signaling pathway; negative T cell selection; and positive T cell selection. Predicted to act upstream of or within adaptive immune response. Predicted to be active in cytoplasm and nucleus. Orthologous to human THEMIS (thymocyte selection associated).

NR:

description
protein THEMIS-like

GO:

id name namespace
GO:0043368 positive T cell selection biological_process
GO:0043383 negative T cell selection biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219452.1 True 3339 mRNA 0.49 8 287735 295803

Neighbor

gene id symbol gene type direction distance location
ptprk LOC107653136,LOC106607755,LOC106571353 coding upstream 135 295938 ~ 428897 (-)
si:dkey-126h10.1 si:dkey-126h10.1,LOC107757668,LOC107653135 coding upstream 156074 451877 ~ 458866 (-)
arhgap18 arhgap18,LOC107660538,LOC107740524,LOC107653144,LOC107560483 coding upstream 317872 613675 ~ 638556 (-)
med23 med23 coding upstream 571916 867719 ~ 905091 (-)
gjb7 gjb7,cx28.8,LOC107563147,LOC107569825,LOC107709909,LOC107576048 coding upstream 725827 1021630 ~ 1025274 (-)
G135010 LOC107565037,LOC107653137,LOC107757675 non-coding downstream 1176 282902 ~ 286559 (-)
G135035 NA non-coding upstream 237812 533615 ~ 604306 (-)
G135036 NA non-coding upstream 309431 605234 ~ 606164 (-)
G135067 NA non-coding upstream 314939 610742 ~ 611218 (-)
G135185 NA non-coding upstream 404736 700539 ~ 709031 (-)
G135195 NA non-coding upstream 436083 731886 ~ 732431 (-)
tmem244 tmem244 other upstream 347768 643571 ~ 650357 (-)
epb41l2 epb41l2,LOC107717037,LOC107560489,LOC107697498,LOC107653142,LOC100380760,LOC107711607 other upstream 457764 753567 ~ 822510 (-)
G135237 NA other upstream 642362 938165 ~ 965395 (-)
G135276 NA other upstream 806902 1102705 ~ 1103113 (-)
G135275 NA other upstream 807503 1103306 ~ 1105818 (-)

Expression


Co-expression Network