cpsf3 (cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862)


Basic Information

Item Value
gene id cpsf3
gene name cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15343944 ~ 15349221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219478.1
ACCGGAAGTACTTGTCTCACGTCCATGGTGTGTGGTTCTCAATGCTCGTGATCgttgtctattattattattagaagtaTCGATGGGTAGTGAATAAATACTTATTCGTTCAGTGTAAAACACACCACAAGCATGGCTACGAAACGTAAAGCGGATGTACCAGTGCCCGCGGAAGAGAGCGATCAACTCCTCATAAGACCACTAGGAGCTGGTCAAGAGGTGGGCAGGTCCTGTATCATCCTGGAGTTTAAGGGCCGCAAAATCATGCTGGACTGCGGCATCCACCCTGGATTGGAGGGCATGGACGCATTGCCTTACATCGATCTGATAGACCCTGCCGAGATCGACCTGCTCCTGATCAGCCATTTTCACTTGGATCATTGCGGAGCCTTGCCGTGGTTTTTACAAAAGACGAGTTTCAAAGGGAGGACATTTATGACCCACGCCACCAAAGCCATTTACCGCTGGCTGCTTTCAGATTATGTCAAAGTCAGCAACATCTCGGCGGATGATATGCTGTACACCGAGACCGATCTAGAGGAGAGCATGGACAAGATCGAGACCATCAACTTCCACGAAGTGAAAGAGGTGGCCGGCATCAAGTTCTGGTGCTACCACGCAGGGCATGTTTTGGGAGCAGCCATGTTCATGATAGAGATTGCGGGAGTGAAACTGCTGTACACGGGAGATTTCTCACGTCAAGAAGACAGACATCTCATGGCAGCCGAGATCCCCAGCGTCAAACCAGACATTCTCATCACAGAGTCTACATACGGCACACACATCCAtgagaagagagaggagagagaggctCGTTTCTGTAACACGGTTCATGACATAGTGAACCGCGAGGGCCGCTGTCTCATTCCTGTGTTTGCTTTGGGTCGAGCCCAGGAGCTGCTGCTCATTCTGGATGAATACTGGCAGAATCACCCTGAACTCCATGACATTCCCATCTACTATGCCTCATCCCTGGCCAAGAAGTGCATGGCGGTGTACCAGACTTATGTGAACGCCATGAACGATAAGATCCGCAAGGCCATCAACATTAACAACCCGTTTGTCTTCAAGCATATCAGCAATCTTAAGAGTATGGACCATTTTGATGACATTGGCCCTAGTGTGGTGATGGCATCTCCAGGTATGATGCAGAGCGGTCTTTCCAGAGAGCTTTTTGAGAGCTGGTGCACCGACAAGAGGAACGGTGTCATCATAGCGGGTTACTGTGTAGAGGGAACACTCGCCAAGCATATCATGTCTGAGCCAGAGGAGATCACCACCATGTCGGGACAGAAGCTTCCTCTGAAGATGTCCGTGGACTATATCTCCTTCTCTGCTCATACAGACTACCAGCAGACCAGCGAGTTCATCAGAGCTCTGAAACCTCCTCATGTGATCCTGGTTCATGGAGAGCAGAATGAGATGGCTCGACTGAAAGCCGCTTTGATACGAGAGTATGAGGACAACGATGAGGTTCACATCGAGGTGCACAACCCTCGTAACACTGAGGCCGTCACGCTCAACTTCAGAGGAGAGAAACTGGCCAAGGTGATGGGCTCTCTTGCCGATAAGAAGTCCGTGCAGGGTCAGCGGGTCTCGGGCATCCTGGTTAAAAAGAACTTTAGTTATCACATCCTCGCACCTTCTGACCTCTCCAATTACACCGATCTGGCCATGAGCACAGTGAAACAGACCCAAGCCATTCCCTTCACCGGCCCTTTTCCCTTGCTTTTGAGTCAGCTACGGCACCTGACAGgtgATGTGGAGGAGGTCGAGATCTCAGAGAAGAGCACACTGAGAGTCTTTAACAGCATCACAGTGGTTCATGATCAGAACATGGTGCTGCTGGAGTGGTTTGCCAATCCTCTGAATGACATGTACGCTGATGCCGTGACCACAGTGGTGCTGGAGGTGCAGTCCAACCCTAAAGCTCAGAAAGttGTTCAGCCCCAAGAAAAGAAGGTGGATGTGAATGCTTTCCAGAATAGATTACTGAAAATGTTCCAAGACATGTTTGGAGAAGAGTGCGTCGACTTTAAAGACAAGAGCTGTCTCGCTGTAAGTGTAGATGGGAAAACTGCCTTTATCAACCTGGAAACCAGAATCGTGGAGTATGAGGAGGACAATTCTGAAGATGATTCTCTCAGAGAAATGGTGGAGCTTGCCGTACAGAGACTGTATGAAGCCATGAACCCCGTCATGTGAGATGGGCTCGTAATTTCAGCGTCCATCTAACTCAAGCTACTTCGATCAGACAGAAGACACTGGCCAAAGCTTTTCGAAGCATTGAATTTACATTCAAATCAAACGTAAAACAGTTAAAGCTTGATGCTGCTACATTTGTGCAGTCAGGATACTACATACTATGTAGTGATcgtttaaattgttgtttttgtcaaattttttaaaatgtgacatttttgttaAAGGAGGAGCTGTAATTTAAGACCCAATGTACTGGTTTAATAAAAGAGGTCTTTGAGTCAA

Function

symbol description
cpsf3 Predicted to enable 5'-3' exonuclease activity; RNA binding activity; and endoribonuclease activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage and mRNA polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF3 (cleavage and polyadenylation specific factor 3).

NR:

description
cleavage and polyadenylation specificity factor subunit 3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14403 CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219478.1 True 2487 mRNA 0.48 18 15343944 15349221

Neighbor

gene id symbol gene type direction distance location
taf1b LOC107575862 coding downstream 36661 15302806 ~ 15307283 (-)
klf11a klf11,klf11a,LOC107549098,LOC107693793,LOC107668260,LOC107756587,LOC107601876 coding downstream 46036 15294518 ~ 15297908 (-)
LOC122324271 rrm2,LOC107668265,LOC107549099,LOC107756588 coding downstream 51689 15288771 ~ 15292255 (-)
LOC122325630 NA coding downstream 53534 15290275 ~ 15290410 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 59651 15281002 ~ 15284293 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding upstream 16737 15365958 ~ 15370030 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding upstream 67746 15416967 ~ 15418769 (-)
rnf144ab rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108 coding upstream 89516 15438737 ~ 15452011 (-)
sox11b LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258 coding upstream 169989 15519210 ~ 15521783 (-)
LOC122325442 rps7,LOC107668222,LOC107726469,LOC107601753 coding upstream 492982 15842203 ~ 15845477 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding downstream 19664 15323572 ~ 15324280 (-)
LOC122324712 NA non-coding downstream 500208 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 550235 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 765043 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 818921 14524732 ~ 14525023 (-)
G138828 NA non-coding upstream 21387 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 167622 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 334955 15684176 ~ 15711053 (-)
LOC122325621 NA non-coding upstream 372825 15722046 ~ 15722265 (-)
LOC122325623 NA non-coding upstream 373329 15722550 ~ 15722769 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 328675 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 340742 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 898019 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1145416 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1576120 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 493177 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 493677 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 494188 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 495133 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 640928 15990149 ~ 15993645 (-)

Expression


Co-expression Network