LOC122324803 (rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701)


Basic Information

Item Value
gene id LOC122324803
gene name rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 3196313 ~ 3220549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219485.1
CAAAGACAGCGTGGAGCTTCCTTTTCTAGCAAAGTGAAGTGAACTAGCTGACCTAGCGGCTGGGTGCGAGGAATGCTGCAGTGCACTCTACGTAGATATGGAAGAACCGGCCCTGAACATGTTTTCAGTGCGCATCGTCACGGCGGATTATTATATGAGCAGTCCGATCAAAGAGCTGGACGTCTGTTACTCTGAGTTCAGAGAAAGCGATGTCAAGAAAGTGCCCGTGGTGCGGATTTTTGGGGCCACACCAGCAGGCCAGAAGACATGTCTTCATCTGCATGGTATGTTTCCATACATCTATGTGCCGTATGATGGGTTTGGAAAGGATGCAGATCGTTACCTGCGGCAGGTGGCCTACAGTATTGACAGAGCCCTGAATGTCAGCATGGGAAACCCCTCGTCTAATGTGCAGCACATCTTTAAAGTGGTTCTGGTGTCTGGCATGCCTTTCTATGGATACCATATGAAGGAAAAAACCTTTATGAAGATTTACCTATACAACCCACAGATGGTCAAAAGggtGAGTGAACTCCTGCAGGGTGGAGCTGTAATGAATAAGAGTTTTCAGCCCCATGAAGCTCACATTCCATTCCTGCTGCAGCTCTTTATCGATTACAACCTCTACGGCATGAACATGATCAGTCTTGCTGCTGTTAAGTTTCGAATAAACCATGCAACAGTAGGAGAGCATTTGTCAAATAGGGGGGGTAGTAGCTTCAGCCCAAAAACTCAGTCTAAACTCAGTGAAGGCAGACTGAGAGACGCAGTGCGCTGGGAGTATGACAACATACCGAGTTCTCTTATTTTAGAGGAGGTGGAGcggatgagtgtgtgtgagctggaGGTTGATGCCGTGGCTGCTGATGTTCTCAACCGCCTAGAGATTGAGAaTCAGATTGGGAGAAACCCTGGTCTTCAGGCCATCTGGGATGATGAGAAACAGCGACGACAGGAGAGAGGTCAAAGTTCTCATATAGACATGCCTGAATCACAAGATCGAGGCTTTCTAGAATTTGCAGAGAGTGAAAAAATCTTCATGAAGAGATTCAAAGAAATTCTCAAGGAAAATGAATTTGACATGACTCAAACTGGGTCTGAAGTTGACTCTTTCCCTGAGCTCTCACTTTATGCTGCTGTGTTAAGCCCAGATGACTTGCCTTGCATACCTGCCAGCCAAGTGGATGTGCATCGAGATGCATTTAAAGACGCAAAAAGACATGGTGGGAAAGATGCTGAAGTGGCAGTTGTTGATGAAGAGGCCATTTTGAGTTTGTTGGAAAACAGCCAGACCTTCCTCCATTCTCATGGACCCAACCAATCAGCAGTACTTGacagCAGTCAAGACCAGGCTATGATTGATCTGTTTGAAGCATTGGCTGATGATGGATTTAGAGTCGACAGATCCAGAACAGTGTCCCAGCAGCTGTCAGGCATTGCTAGCTGCATGTGTAACAGTGATGATGAGGAAGCTGGGCCTGAGCTGGAGAAAGAAGAGTCAGAACTCAGTATAATCATGTCCCAAAGATGGGACTGTGACATGCCAGGACCCTCTGCTGGGCAAAGATTATGTATGAAAGAATCAAATGAAAGCTCCAGTGAAGAGCAGCAGGCTTCATCAGATGAAGAGATATATTGGAAGGGAAACAGTGCTGTTCTTATTGATCTGTCCATTCCACAGTTGGATGGAGCTGCAGATGAGAATAGTGATTCATCACTAACAGACAAGGAATCTCGGACACGCTCATCTCTAAAAGCAACAGACAAGATCCTTggaagcagaaatgtttttggaaatgaAGCTGTTAAGTATGGAGCCACCATCTTctgctaa

Function

symbol description
rev3l Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via homologous recombination and error-prone translesion synthesis. Predicted to act upstream of or within translesion synthesis. Predicted to be part of zeta DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human REV3L (REV3 like, DNA directed polymerase zeta catalytic subunit).

NR:

description
PREDICTED: DNA polymerase zeta catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219485.1 True 1834 mRNA 0.46 14 3196313 3220549

Neighbor

gene id symbol gene type direction distance location
LOC122324357 tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823 coding downstream 17031 3132081 ~ 3179282 (-)
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding downstream 347688 2787139 ~ 2848625 (-)
LOC122325188 LOC107714796,LOC107565462,LOC107670243,LOC107550532,LOC107676708,LOC107715681,LOC105017614,LOC106607890 coding downstream 417488 2761146 ~ 2778825 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding downstream 525458 2663778 ~ 2670855 (-)
lama4 lama4 coding downstream 564170 2596412 ~ 2632143 (-)
LOC122324861 rhob,LOC107730407,LOC107704819,LOC107569216,LOC107549346,LOC107657220,LOC105907285,LOC103025336,LOC106607565 coding upstream 251445 3471994 ~ 3473405 (-)
tshr LOC107728338,LOC107549347,LOC107657214,LOC107681439,LOC107742823,LOC107569215 coding upstream 317324 3537873 ~ 3547204 (-)
trnat-ugu_52 NA coding upstream 1228834 4449383 ~ 4449455 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding upstream 1448130 4668679 ~ 4674148 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding upstream 1474965 4695514 ~ 4705308 (-)
G135691 NA non-coding downstream 435429 2759097 ~ 2760884 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding downstream 458424 2732603 ~ 2737889 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding downstream 549232 2644181 ~ 2647081 (-)
G135629 NA non-coding downstream 616611 2579269 ~ 2579702 (-)
G135627 NA non-coding downstream 618825 2577132 ~ 2577488 (-)
G135819 NA non-coding upstream 166643 3387192 ~ 3387529 (-)
G135901 NA non-coding upstream 676653 3897202 ~ 3897582 (-)
G135910 NA non-coding upstream 769308 3989857 ~ 3990072 (-)
G135916 NA non-coding upstream 784288 4004837 ~ 4006307 (-)
G135918 NA non-coding upstream 786006 4006555 ~ 4007352 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 438883 2740552 ~ 2757430 (-)
G135548 NA other downstream 831489 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 1182786 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 1320021 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 1535777 1655096 ~ 1660536 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 417740 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 748214 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 1343807 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 1790832 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 1804257 5024806 ~ 5029567 (-)

Expression


Co-expression Network