gpatch2 (LOC107708325,LOC107593261,LOC107685352,LOC107550410)


Basic Information

Item Value
gene id gpatch2
gene name LOC107708325,LOC107593261,LOC107685352,LOC107550410
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21656663 ~ 21664934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219509.1
GGCGCGGCGgcggtgttgttgttgttgaggcGCTATGGTATGTCAGCGCGGCCTCGATCTTTTCCCGTGAGTTTTTGTCGCGTTCTGCGGGTTTCATGTTCCGCGCCGCCGAGATCAAGAGCTTCGGTAAAGCGGGAACCGGCTGGCACTTTCGGCGGACGATGGACGAGCTGGTCCATGACCTGGTGTCGGCTCTGGAGGAGAGTTCAGAACAAGCCCGTGGAGGGTTTGGAGATGGTGGAGATCACGCTCTGGCCGTCGGCTGCCTGTTAAAACGGCAGGCCCGCAAGCGGCGCGGCCGGAAGCGTCGGTCCGACAACCCTCACCCGCCGTGGGACACCTGCCACCTGAGCGAAGGCTCCGAGTCCAGCCTGGAGGAGCAGAAAGACTACCGCTCATCCACGGCGGCAGGGGGCGCTCACACCCGCGACAACAACAGCGACTCGGACGAGCAGCTGGGCGCGAAGCGGCGGACGCCCCTCACCGACTCCGGCCGGGGGAAGAGGCCTCTGTGGCTGGACGACTTGAGCGGAGCGGATGTTTTGGGAACGCGCAGCTTGCGAAGGCGGCGGAAAGTCAAGCGCATGGCCGTGGACCCGCCGCTAGATGTCTCCACCATGTTGGCTCCGCCCCCAAGAGCAACCAACAGCAGGGAGGCGGGGTTTAGCCCGGAGGCCAAGGGGAGCgaatcaaacaaaaacagggTGAAGAAGAGGAAGTTCACGGCGCAGAGACTCGCACAGGACGCGGCTGATGAAGGCGTGGTGGTGGAGAGCGAAGAGGCGGGACAAGCTGCCAAAGATAAGATGGACTATGAGGAGCAGAAAGGCTCAGACGAGGAGATGAGTGACAGGTGTGAGACGAGCAGTGTGAGTAACAGCAGTGACGGGGGTCTGTACACAAACGATGAAGGAAGGCAAGgcgATGATGAGCAGAGTGATTGGTTCTATGAGGGCGAGCCGGGCGGGGCCTGTGGAATCGCGGGTGTAGTGCCGTGGTGGGAGAGAGACTCTAACGAGCTCGACCTCAACGACCCTGTGTTCAACAGCATCCTGACCGGAGCGTTCCCGTTAATGTCACAAGGATCTCAAAGAGGATTTCAAGCACGTCTCGCGCGGCAGGCCTGTCTTCAGCAGTCACAGGGAACCTCTCAAGGAATTCCTGATCGATTACCCAGATTATCCCAGGATCCTCACGACTCATGGTTCAGCTCTGGGGCCAGAAGAGACCAATTGCTTTGGGATTCTCGCAGTGACAGAAGCCACAGAAAAAGCTGCTCTTTAAAGACTGCCAGCagACAAACTAGTGGTCATCTTGGCTCTCTGTGTACTGGAGATATAAAGAGGCGACGAAAAGCAGCGCCTGTGAGTGCCCCGTCATCctcaggtgtGGTGGGTGAGAGCGCTGCTCCTTTGCCCGAGTCGAATGTGGGGAACCGTATGCTGCAAAGTATGGGCTGGACCCCGGGGTCGGGCCTGGGCCCCGACGGCAGAGGCATCACGGAGCCCATTCGTGCGTCTCAGAGGCCGAAGGGAGCGGGACTGGGCTTCAACTGAGCTCGAGTCGAGAACAGAGAGAGCAACTCGTGCAGAGACAGCAGCCCCGGGCCACGGGCCGCATTTCTCTCTGTTAACCTCAGCGTTCACAGCAGCCAGCCATCAGAGGGCAGCACTGAGGTGATAGAGATGAAACGAAACAGGACACCTGCACTGGCCCAGACAAGGACTGACTCTAGAGCTGCCTCACtgccaccacacacacacacacacacacacacagactcatttCAACATGACCGTTAAACCGTTAAACTCCAGAAAATACACGATTCACCAAAAGAGTATCATTAGAATCAAGAATTTGCCAtttgtaatacaaatatttctacAGTATAGGATGAATTTAATGAGGAAATATTAAACTGCAAAAATCataggaaataaataatattttgcatagCCTGTTTATAGGACCTTGACGATTTTCAGCTTAATggcattattttcatgttaattaTGCATATTCCTCCCAACATTCTTGTTAttgtactgtaattttttttttttgttaagatgAATTAACTATACTCAATGTATTAGTATTACATTGCAACAATGATAATTTGAAAAATTATCAAAGCTAACAGCGGTACTAAAAACAGGCTTCATGCAAAATAcgatttattgttgttattattattctattttgttataattttttcacCCTGCAGAAGTGTTTTAATGAGCCTTTCAGTCCTTATTAGTGATGTTAATTTCAAGCCAACAGCCAAACCTCAGCGGATACCAGCGGAAATtagcaaaacctttttttagttactttttttattattttactttttttttcaaaaactatttttaaatactttcacctcgtattaaaaaaacagcgtGTTTTTGCAGAATAGATCAGTCCAAATTATCGTCTGTCTCCTGtattcttttaatattcttttatcCGATGTCACTGATAGCattgtttccttttttgttaaatgatttttttcactttatatttttgttacgttaattttaagtaaaaaaaaaacttttggacGTTTGTGCAAATAGCATGCACTGATAATGAATGTCAATACCTCAGCCGATCACACGCTCATGAAAGCCGCATGTATGAAATGCTGGAATGACGCAGAGTGAAGCGAGCTGCAAGCGCATTTTAATGATGCTACACGAGGGTTCGGGGTCCACTTTGTTTATTTCCGGGGCGTACGATGCGAAATTCAGTGAAATGCGTCTCAGCAGAGTTTGAGTAATGAATAGGATTAATTGACTGAATTGGCTTAGTTGAGATGGAATTAAGCGTTCGAGGAGGCGACACACTTACTACTGACGACTGTCATTTCTGGTTGTCACGAGGTGAAGATTACGCCCGTTGTTGGGTAAACACTTCAATGCCTCTTACGGACAATCCCAGATGATTGGAGATGCTATTATCTTGGCAGAACGTTTAGGAATCCGCTCGACGAGACAGGAAGAGTCTTTGAGCCGAATGTGATATCATTTCCTCTCTGGTGTTTGAGCAGAGCTGTACTTCCCTGTATGAAGATGagtgggtttttttatatttgtttttgggaACACGTTGTATTTTTAACCTTGTTTGCACTCCGAATGAACCGCTTTCGAGCGGTTGTTGGAATGAATGAGGAGCATGTCAGGTTTGTCTCTTCCTGTGATCTGTACATCATGCCAAACTCACAAAACATGCCACCTTTGTTTACATTGGTCTTTTTTGTCGTTTTTGCCAATTTGCGTGTTAGCGACGGGGATGATACggcctctgtgtgtgttctgaagTCAAAGTGACGTACTGTTCATATACTGTAGATCAGTATTAAAGCGTTCTCTGCTCAA
>XM_043219510.1
GGCGCGGCGgcggtgttgttgttgttgaggcGCTATGGTATGTCAGCGCGGCCTCGATCTTTTCCCGTGAGTTTTTGTCGCGTTCTGCGGGTTTCATGTTCCGCGCCGCCGAGATCAAGAGCTTCGGTAAAGCGGGAACCGGCTGGCACTTTCGGCGGACGATGGACGAGCTGGTCCATGACCTGGTGTCGGCTCTGGAGGAGAGTTCAGAACAAGCCCGTGGAGGGTTTGGAGATGGTGGAGATCACGCTCTGGCCGTCGGCTGCCTGTTAAAACGGCAGGCCCGCAAGCGGCGCGGCCGGAAGCGTCGGTCCGACAACCCTCACCCGCCGTGGGACACCTGCCACCTGAGCGAAGGCTCCGAGTCCAGCCTGGAGGAGCAGAAAGACTACCGCTCATCCACGGCGGCAGGGGGCGCTCACACCCGCGACAACAACAGCGACTCGGACGAGCAGCTGGGCGCGAAGCGGCGGACGCCCCTCACCGACTCCGGCCGGGGGAAGAGGCCTCTGTGGCTGGACGACTTGAGCGGAGCGGATGTTTTGGGAACGCGCAGCTTGCGAAGGCGGCGGAAAGTCAAGCGCATGGCCGTGGACCCGCCGCTAGATGTCTCCACCATGTTGGCTCCGCCCCCAAGAGCAACCAACAGCAGGGAGGCGGGGTTTAGCCCGGAGGCCAAGGGGAGCgaatcaaacaaaaacagggTGAAGAAGAGGAAGTTCACGGCGCAGAGACTCGCACAGGACGCGGCTGATGAAGGCGTGGTGGTGGAGAGCGAAGAGGCGGGACAAGCTGCCAAAGATAAGATGGACTATGAGGAGCAGAAAGGCTCAGACGAGGAGATGAGTGACAGTGAGACGAGCAGTGTGAGTAACAGCAGTGACGGGGGTCTGTACACAAACGATGAAGGAAGGCAAGgcgATGATGAGCAGAGTGATTGGTTCTATGAGGGCGAGCCGGGCGGGGCCTGTGGAATCGCGGGTGTAGTGCCGTGGTGGGAGAGAGACTCTAACGAGCTCGACCTCAACGACCCTGTGTTCAACAGCATCCTGACCGGAGCGTTCCCGTTAATGTCACAAGGATCTCAAAGAGGATTTCAAGCACGTCTCGCGCGGCAGGCCTGTCTTCAGCAGTCACAGGGAACCTCTCAAGGAATTCCTGATCGATTACCCAGATTATCCCAGGATCCTCACGACTCATGGTTCAGCTCTGGGGCCAGAAGAGACCAATTGCTTTGGGATTCTCGCAGTGACAGAAGCCACAGAAAAAGCTGCTCTTTAAAGACTGCCAGCagACAAACTAGTGGTCATCTTGGCTCTCTGTGTACTGGAGATATAAAGAGGCGACGAAAAGCAGCGCCTGTGAGTGCCCCGTCATCctcaggtgtGGTGGGTGAGAGCGCTGCTCCTTTGCCCGAGTCGAATGTGGGGAACCGTATGCTGCAAAGTATGGGCTGGACCCCGGGGTCGGGCCTGGGCCCCGACGGCAGAGGCATCACGGAGCCCATTCGTGCGTCTCAGAGGCCGAAGGGAGCGGGACTGGGCTTCAACTGAGCTCGAGTCGAGAACAGAGAGAGCAACTCGTGCAGAGACAGCAGCCCCGGGCCACGGGCCGCATTTCTCTCTGTTAACCTCAGCGTTCACAGCAGCCAGCCATCAGAGGGCAGCACTGAGGTGATAGAGATGAAACGAAACAGGACACCTGCACTGGCCCAGACAAGGACTGACTCTAGAGCTGCCTCACtgccaccacacacacacacacacacacacacagactcatttCAACATGACCGTTAAACCGTTAAACTCCAGAAAATACACGATTCACCAAAAGAGTATCATTAGAATCAAGAATTTGCCAtttgtaatacaaatatttctacAGTATAGGATGAATTTAATGAGGAAATATTAAACTGCAAAAATCataggaaataaataatattttgcatagCCTGTTTATAGGACCTTGACGATTTTCAGCTTAATggcattattttcatgttaattaTGCATATTCCTCCCAACATTCTTGTTAttgtactgtaattttttttttttgttaagatgAATTAACTATACTCAATGTATTAGTATTACATTGCAACAATGATAATTTGAAAAATTATCAAAGCTAACAGCGGTACTAAAAACAGGCTTCATGCAAAATAcgatttattgttgttattattattctattttgttataattttttcacCCTGCAGAAGTGTTTTAATGAGCCTTTCAGTCCTTATTAGTGATGTTAATTTCAAGCCAACAGCCAAACCTCAGCGGATACCAGCGGAAATtagcaaaacctttttttagttactttttttattattttactttttttttcaaaaactatttttaaatactttcacctcgtattaaaaaaacagcgtGTTTTTGCAGAATAGATCAGTCCAAATTATCGTCTGTCTCCTGtattcttttaatattcttttatcCGATGTCACTGATAGCattgtttccttttttgttaaatgatttttttcactttatatttttgttacgttaattttaagtaaaaaaaaaacttttggacGTTTGTGCAAATAGCATGCACTGATAATGAATGTCAATACCTCAGCCGATCACACGCTCATGAAAGCCGCATGTATGAAATGCTGGAATGACGCAGAGTGAAGCGAGCTGCAAGCGCATTTTAATGATGCTACACGAGGGTTCGGGGTCCACTTTGTTTATTTCCGGGGCGTACGATGCGAAATTCAGTGAAATGCGTCTCAGCAGAGTTTGAGTAATGAATAGGATTAATTGACTGAATTGGCTTAGTTGAGATGGAATTAAGCGTTCGAGGAGGCGACACACTTACTACTGACGACTGTCATTTCTGGTTGTCACGAGGTGAAGATTACGCCCGTTGTTGGGTAAACACTTCAATGCCTCTTACGGACAATCCCAGATGATTGGAGATGCTATTATCTTGGCAGAACGTTTAGGAATCCGCTCGACGAGACAGGAAGAGTCTTTGAGCCGAATGTGATATCATTTCCTCTCTGGTGTTTGAGCAGAGCTGTACTTCCCTGTATGAAGATGagtgggtttttttatatttgtttttgggaACACGTTGTATTTTTAACCTTGTTTGCACTCCGAATGAACCGCTTTCGAGCGGTTGTTGGAATGAATGAGGAGCATGTCAGGTTTGTCTCTTCCTGTGATCTGTACATCATGCCAAACTCACAAAACATGCCACCTTTGTTTACATTGGTCTTTTTTGTCGTTTTTGCCAATTTGCGTGTTAGCGACGGGGATGATACggcctctgtgtgtgttctgaagTCAAAGTGACGTACTGTTCATATACTGTAGATCAGTATTAAAGCGTTCTCTGCTCAA

Function

NR:

description
PREDICTED: G patch domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219509.1 True 3392 mRNA 0.48 10 21656663 21664934
XM_043219510.1 False 3389 mRNA 0.48 10 21656663 21664934

Neighbor

gene id symbol gene type direction distance location
dnmt3aa LOC107593266,LOC107721450,LOC107685348 coding upstream 35592 21583612 ~ 21621071 (+)
dtnba LOC107721443,LOC107685345,LOC107593267,LOC107550403 coding upstream 75129 21556765 ~ 21581534 (+)
LOC122324300 kif3c,LOC107690993,LOC107593268,LOC107697206,LOC107721442,LOC107719402 coding upstream 106639 21534504 ~ 21550024 (+)
tfap2b tfap2b,LOC107697208,LOC107719371 coding upstream 229523 21414861 ~ 21427140 (+)
tfap2d tfap2d,LOC107690996,LOC107593304,LOC107721448,LOC107697209,LOC107550400 coding upstream 246014 21401025 ~ 21410649 (+)
esrrgb esrrgb,LOC107685376,LOC107697200,LOC107550385,LOC107719365,LOC107708321 coding downstream 3132 21668066 ~ 21680920 (+)
fosab LOC107697196,LOC107719360,LOC107685356,LOC107550415,LOC107742716 coding downstream 101480 21766414 ~ 21768602 (+)
tmed10 tmed10,LOC107697197,LOC107685358,LOC107593259,LOC107550417 coding downstream 106358 21771292 ~ 21774369 (+)
eif2b2 eif2b2,LOC107719358,LOC107685362,LOC107697194,LOC107742715 coding downstream 109950 21774884 ~ 21779245 (+)
rmdn3 rmdn3,LOC107593256,LOC107685363,LOC107719355,LOC107697192 coding downstream 123025 21787959 ~ 21794143 (+)
G140721 NA non-coding upstream 19469 21636509 ~ 21637194 (+)
LOC122325460 NA non-coding upstream 103549 21551685 ~ 21553114 (+)
G140691 NA non-coding upstream 137687 21516791 ~ 21518976 (+)
G140707 NA non-coding upstream 168420 21483605 ~ 21488243 (+)
G140708 NA non-coding upstream 173386 21482627 ~ 21483277 (+)
G140698 NA non-coding downstream 33487 21698421 ~ 21699258 (+)
G140747 NA non-coding downstream 67641 21732575 ~ 21735672 (+)
LOC122325564 NA non-coding downstream 71032 21735966 ~ 21738747 (+)
G140784 NA non-coding downstream 175289 21840223 ~ 21840465 (+)
G140786 NA non-coding downstream 179899 21844833 ~ 21845453 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 454701 21168775 ~ 21201962 (+)
G140533 NA other upstream 554153 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 864960 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 982274 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 1064504 20554113 ~ 20592159 (+)
G140785 NA other downstream 179212 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 806827 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 841793 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 1079478 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1177871 22842805 ~ 22860327 (+)

Expression


Co-expression Network