esrrgb (esrrgb,LOC107685376,LOC107697200,LOC107550385,LOC107719365,LOC107708321)


Basic Information

Item Value
gene id esrrgb
gene name esrrgb,LOC107685376,LOC107697200,LOC107550385,LOC107719365,LOC107708321
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21668066 ~ 21680920 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219511.1
TTGATTGGAAGAATATGTAATGCACCCTTATTGATCAATCTTCGTTGTGAACAGAGCAAATGACTGCTGCGAGGAGCGCAGCGATCTTCCCTACACTTTGAAAGAGTTGAGAAACTATGGAAAAATCACAACTGTAATCCTGCTGTATATTTACGTAAGAATCGAAGCAGAGCGCTTTAATAAGCACACGTTCTGGCAGCGTTCACCGGCCGTCTTACAGCAATAGGATTTGAGATGTGTGATGGAGTCACAGGTAATTCCTCTGGATCCCAGACAAAAACCCTGATGGGCTTTAGGATCACGTTACTGGCcgctgtgtgtgagagatggaGTGATAAAAACAGCTTTCTGGACATGATGTCGATCGACGGACACTGTCCCGCCTTCATCAAGACGGAGCCGTCGAGCCCTTCTTCTCTGTCGGACAGTCTGACCCAGCACAGTCCCGGGGCGTCGTCGGACGCCGGGAGCAGCTACAGTTCAGTAACTAAAGGGAAGCCGACAGGCCTGGACTCTCCTGCGGCGGAGGTGGATCTGAGGCGTCCCGGCGCCCCCTGCAGGCTGCTGGAGGAAGCGCAGGAGAAGAGCGGATACGCGCTGAGCTCGGGTCCCAAACGCCTGTGCCTCGTGTGCGGAGACGTTGCGTCCGGTTTTCACTACGGAGTGGCTTCCTGCGAGGCCTGCAAAGCTTTCTTCAAACGCACCATTCAAGGAAATATCGAGTACAGTTGTTCGGTCAGCAGAGACTGTGAGATCACTAAAAGAAGGAGGAAGTCCTGTCAGGCCTGCCGCTTCACTAAGTGTCTGTCCGTGGGAATGCTGcgagaaggTGTGCGTTTGGACCGGGTGAGAGGAGGAAGACAGAAATATAAGAGGAGAATCGACTCTGATTCCAGCGTCTTCTTCAGTGTACAGCAACCTCACAGAAAACAACCATCCTGCAGCACTCTGGGGGAGAATAAGGTAGTGACCCTGCTGTTGGGGGCGGAGCCAGAGAAGGTGTGTGCCATGCCTGACCCCGCCCTTCCCGACAGTGACATCAAAGCCCTAACGACCCTGTGTGACCTCGCCGACAGAGAGCTGGTGCTTAACATCAGCTGGGCCAAAAACATACCAGGTTTCTCCAGCCTCTGTCTGTCTGATCAGATGAGCCTCCTGCAGAGCGCCTGGATGGAGATCCTCGTCCTGCGCGTGGCTTTCCGCTCGCTGCCCTGCGAGGACAAGCTGGTGTTTGCGGACGATTACATCATGGATGCTGAACAGGCCAAATCAGCAGGTCTGCTGGAGCTCCACAAGGCCATATTACAGCTGGTGAGCAGGTACAGGTCCATGAGGCTGGAGAAAGAAGAGTTTGTCACTCTGAAAGCCATCGCTCTCGCCAACTCAGACTCGATGCATATAGAGGACGTGGAGGCCGTTCAGGGTCTTCAGGACTCTCTCCATGAAGCTCTTCTGGATTACGAGTGTGTCCATCACAGGGAAGACCCCCGACGGGCGGGGAAACTCATCATGACCCTTCCACTCCTCCGCCAGACCTCCGCCAAAGCCGTGAGGCATTTCTGCAGCATCAAGCAGGATGGACGCGTTCCCATGCACAAACTCTTCCTGGAACTTCTGGAGGCAAATGTCTGATCCTTCACCTGATTGGACCGTCAAACACGCCCCTCCAGCACACGACTGGATGAAGGATTATTCACGGATCCAGGGAAAACAAAAGGCGCTCGTCATTGTCATGACACATAACAATAATACAGGATGTTCTCAGACAAATACAGTTTGTTTCATATAGCTGAGGATcagagaaaactaaaaaatgaagtatcaaatatacatactgtttaaaattatcattattttttaggaaattcataattttattgcacaaggatgcattcaattgatcaaaagtgacggtAAATACTTctataatgctacaaaaattcatatttcttttttttactttctggtTATCAAAGGATCCAAAACGCATTATGGTTtcaacaaaatataatgttttcaaCATAGGAAATTTCTTAAGctacaaatcagcatattaaatgatttcttaaggatcgTGCGACTCTGAAACTTCAgcaggaatacattacatttttaaatatattcagatacaaagcagtcattttttaattgtaatattatttcacaatattgcagattttgatcaaataaatgcagccttggtgagcataaaagtgAGCCCAGACATTAACGAGCGAGTGCTggaataaatattgttaaattattggAGAAACTACATTTTAATCTTGAAGGTGtttattgtttgcattttatttatcaagttAAGTTATTGaagacttatttaaaaaaaaaaaaaaaaaaaattttcagttttcataaGAGCTTTATCACAGTAGAGAGCATCAGCATTGCCAAATATTAGTAGTCAGTAATTGCTCTCCTCACGcagatatgaagaaaaaaactactgcagaatttaaattaaaaggaCTCAGAGATGCAGAAATATAACATACAGATGAACAGAAGTTAAGTGTAGAAACATCAAACAGACCCCAAAGCACTTCTACTGAAAAGGTGAGATGATTAGCATAATAGATAACAtaatgaaggattttttttttgtcttcagacGCTTGTATTTAGATCTGCACAACTAAAGGTGAttgcagcttttatttattccatAAATGCCATGTTTTACCACATAAACCTTTTAATTTGCCAGACAGGAAGGTTCTTGCTCAGTCagtgacagaaaagaaaagCCATAGTAATATCTGTTCTCAGCTCATTCACCGAGATGTGAAATTATCTTCTAATGCAACAACTGAATGTTATTCGATTTACTTTTCTATctctcaattctgacttttttcccaGAATCGCGTGACATTAACTCACAGCTGCATATGGACAAGCCTGAATTGCAAAGTATAAACTAAGTCAttattgcaagatataaacttgcaaaaaTAGCgacttttaaaatgcactgtATAACACTCTATAACGAGTTAATTTTTCATGGTAAACATAATAtgcatatcatattttttttctttctttgacgtttatatttcacaatccTGGGAGAAAAGTCAGACTTGGTTAGATataattacctttattttttttaatcctgtgGCGGAAACGGGTTTCCGTAGTTAGGCTTTTTGGTGTTCAGACATTTAATATGTTTACCGTAACAAAGGAAACAGTAGATACAAGCTACACGTATCTATTTGagataaagaaaaatgtgtctGTGAATACGAATAACATCATCTTCCTTCAGTCTCTGAGGAACTATTTGtcgttgtgtgtgttttacaccaTTTCTGCTTGTGAAGGTTTGTGGATATTGTACGACACTCAATTTTGTCTCATtgattatatgcatttttttttttttttaataaatgtcaaaaatgacaaatgcgtTCAACAACAATGCATTAAACAGTGAA
>XM_043219512.1
AAGCAGGAACGCAGTGAGGAGAAACACTCGGgcgttaatgcattaaaacatttcagacgAAAAAGCAGAGGGAGATTCGGTGTTTTGCACAGTTTTTTAGGTTATGGTTTCATTTTTAGCTGTCTAATGGATCTAGTGCAGTTTTATCACCCGGAATCtttttccttcccttctgaACAGAGCAACTTTCTGGACATGATGTCGATCGACGGACACTGTCCCGCCTTCATCAAGACGGAGCCGTCGAGCCCTTCTTCTCTGTCGGACAGTCTGACCCAGCACAGTCCCGGGGCGTCGTCGGACGCCGGGAGCAGCTACAGTTCAGTAACTAAAGGGAAGCCGACAGGCCTGGACTCTCCTGCGGCGGAGGTGGATCTGAGGCGTCCCGGCGCCCCCTGCAGGCTGCTGGAGGAAGCGCAGGAGAAGAGCGGATACGCGCTGAGCTCGGGTCCCAAACGCCTGTGCCTCGTGTGCGGAGACGTTGCGTCCGGTTTTCACTACGGAGTGGCTTCCTGCGAGGCCTGCAAAGCTTTCTTCAAACGCACCATTCAAGGAAATATCGAGTACAGTTGTTCGGTCAGCAGAGACTGTGAGATCACTAAAAGAAGGAGGAAGTCCTGTCAGGCCTGCCGCTTCACTAAGTGTCTGTCCGTGGGAATGCTGcgagaaggTGTGCGTTTGGACCGGGTGAGAGGAGGAAGACAGAAATATAAGAGGAGAATCGACTCTGATTCCAGCGTCTTCTTCAGTGTACAGCAACCTCACAGAAAACAACCATCCTGCAGCACTCTGGGGGAGAATAAGGTAGTGACCCTGCTGTTGGGGGCGGAGCCAGAGAAGGTGTGTGCCATGCCTGACCCCGCCCTTCCCGACAGTGACATCAAAGCCCTAACGACCCTGTGTGACCTCGCCGACAGAGAGCTGGTGCTTAACATCAGCTGGGCCAAAAACATACCAGGTTTCTCCAGCCTCTGTCTGTCTGATCAGATGAGCCTCCTGCAGAGCGCCTGGATGGAGATCCTCGTCCTGCGCGTGGCTTTCCGCTCGCTGCCCTGCGAGGACAAGCTGGTGTTTGCGGACGATTACATCATGGATGCTGAACAGGCCAAATCAGCAGGTCTGCTGGAGCTCCACAAGGCCATATTACAGCTGGTGAGCAGGTACAGGTCCATGAGGCTGGAGAAAGAAGAGTTTGTCACTCTGAAAGCCATCGCTCTCGCCAACTCAGACTCGATGCATATAGAGGACGTGGAGGCCGTTCAGGGTCTTCAGGACTCTCTCCATGAAGCTCTTCTGGATTACGAGTGTGTCCATCACAGGGAAGACCCCCGACGGGCGGGGAAACTCATCATGACCCTTCCACTCCTCCGCCAGACCTCCGCCAAAGCCGTGAGGCATTTCTGCAGCATCAAGCAGGATGGACGCGTTCCCATGCACAAACTCTTCCTGGAACTTCTGGAGGCAAATGTCTGATCCTTCACCTGATTGGACCGTCAAACACGCCCCTCCAGCACACGACTGGATGAAGGATTATTCACGGATCCAGGGAAAACAAAAGGCGCTCGTCATTGTCATGACACATAACAATAATACAGGATGTTCTCAGACAAATACAGTTTGTTTCATATAGCTGAGGATcagagaaaactaaaaaatgaagtatcaaatatacatactgtttaaaattatcattattttttaggaaattcataattttattgcacaaggatgcattcaattgatcaaaagtgacggtAAATACTTctataatgctacaaaaattcatatttcttttttttactttctggtTATCAAAGGATCCAAAACGCATTATGGTTtcaacaaaatataatgttttcaaCATAGGAAATTTCTTAAGctacaaatcagcatattaaatgatttcttaaggatcgTGCGACTCTGAAACTTCAgcaggaatacattacatttttaaatatattcagatacaaagcagtcattttttaattgtaatattatttcacaatattgcagattttgatcaaataaatgcagccttggtgagcataaaagtgAGCCCAGACATTAACGAGCGAGTGCTggaataaatattgttaaattattggAGAAACTACATTTTAATCTTGAAGGTGtttattgtttgcattttatttatcaagttAAGTTATTGaagacttatttaaaaaaaaaaaaaaaaaaaattttcagttttcataaGAGCTTTATCACAGTAGAGAGCATCAGCATTGCCAAATATTAGTAGTCAGTAATTGCTCTCCTCACGcagatatgaagaaaaaaactactgcagaatttaaattaaaaggaCTCAGAGATGCAGAAATATAACATACAGATGAACAGAAGTTAAGTGTAGAAACATCAAACAGACCCCAAAGCACTTCTACTGAAAAGGTGAGATGATTAGCATAATAGATAACAtaatgaaggattttttttttgtcttcagacGCTTGTATTTAGATCTGCACAACTAAAGGTGAttgcagcttttatttattccatAAATGCCATGTTTTACCACATAAACCTTTTAATTTGCCAGACAGGAAGGTTCTTGCTCAGTCagtgacagaaaagaaaagCCATAGTAATATCTGTTCTCAGCTCATTCACCGAGATGTGAAATTATCTTCTAATGCAACAACTGAATGTTATTCGATTTACTTTTCTATctctcaattctgacttttttcccaGAATCGCGTGACATTAACTCACAGCTGCATATGGACAAGCCTGAATTGCAAAGTATAAACTAAGTCAttattgcaagatataaacttgcaaaaaTAGCgacttttaaaatgcactgtATAACACTCTATAACGAGTTAATTTTTCATGGTAAACATAATAtgcatatcatattttttttctttctttgacgtttatatttcacaatccTGGGAGAAAAGTCAGACTTGGTTAGATataattacctttattttttttaatcctgtgGCGGAAACGGGTTTCCGTAGTTAGGCTTTTTGGTGTTCAGACATTTAATATGTTTACCGTAACAAAGGAAACAGTAGATACAAGCTACACGTATCTATTTGagataaagaaaaatgtgtctGTGAATACGAATAACATCATCTTCCTTCAGTCTCTGAGGAACTATTTGtcgttgtgtgtgttttacaccaTTTCTGCTTGTGAAGGTTTGTGGATATTGTACGACACTCAATTTTGTCTCATtgattatatgcatttttttttttttttaataaatgtcaaaaatgacaaatgcgtTCAACAACAATGCATTAAACAGTGAA

Function

symbol description
esrrgb Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within otic vesicle development and otolith formation. Predicted to be located in nucleus. Orthologous to human ESRRG (estrogen related receptor gamma).

NR:

description
PREDICTED: estrogen-related receptor gamma-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08703 NR3BN, ERR; estrogen-related receptor ERR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219511.1 True 3470 mRNA 0.42 7 21668985 21680920
XM_043219512.1 False 3311 mRNA 0.42 7 21668066 21680920

Neighbor

gene id symbol gene type direction distance location
gpatch2 LOC107708325,LOC107593261,LOC107685352,LOC107550410 coding upstream 3132 21656663 ~ 21664934 (+)
dnmt3aa LOC107593266,LOC107721450,LOC107685348 coding upstream 46995 21583612 ~ 21621071 (+)
dtnba LOC107721443,LOC107685345,LOC107593267,LOC107550403 coding upstream 86532 21556765 ~ 21581534 (+)
LOC122324300 kif3c,LOC107690993,LOC107593268,LOC107697206,LOC107721442,LOC107719402 coding upstream 118042 21534504 ~ 21550024 (+)
tfap2b tfap2b,LOC107697208,LOC107719371 coding upstream 240926 21414861 ~ 21427140 (+)
fosab LOC107697196,LOC107719360,LOC107685356,LOC107550415,LOC107742716 coding downstream 85494 21766414 ~ 21768602 (+)
tmed10 tmed10,LOC107697197,LOC107685358,LOC107593259,LOC107550417 coding downstream 90372 21771292 ~ 21774369 (+)
eif2b2 eif2b2,LOC107719358,LOC107685362,LOC107697194,LOC107742715 coding downstream 93964 21774884 ~ 21779245 (+)
rmdn3 rmdn3,LOC107593256,LOC107685363,LOC107719355,LOC107697192 coding downstream 107039 21787959 ~ 21794143 (+)
bmf2 LOC107550420,LOC107593255,LOC107719427,LOC107685367 coding downstream 136283 21817203 ~ 21824119 (+)
G140721 NA non-coding upstream 30872 21636509 ~ 21637194 (+)
LOC122325460 NA non-coding upstream 114952 21551685 ~ 21553114 (+)
G140691 NA non-coding upstream 149090 21516791 ~ 21518976 (+)
G140707 NA non-coding upstream 179823 21483605 ~ 21488243 (+)
G140708 NA non-coding upstream 184789 21482627 ~ 21483277 (+)
G140698 NA non-coding downstream 17501 21698421 ~ 21699258 (+)
G140747 NA non-coding downstream 51655 21732575 ~ 21735672 (+)
LOC122325564 NA non-coding downstream 55046 21735966 ~ 21738747 (+)
G140784 NA non-coding downstream 159303 21840223 ~ 21840465 (+)
G140786 NA non-coding downstream 163913 21844833 ~ 21845453 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 466104 21168775 ~ 21201962 (+)
G140533 NA other upstream 565556 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 876363 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 993677 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 1075907 20554113 ~ 20592159 (+)
G140785 NA other downstream 163226 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 790841 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 825807 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 1063492 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1161885 22842805 ~ 22860327 (+)

Expression


Co-expression Network