LOC122324828 (cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675)


Basic Information

Item Value
gene id LOC122324828
gene name cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4973048 ~ 5010559 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219514.1
ACGAAACTCTCTGAATATCTGAACGGAAGAATGGAGCCGATAACAAAGTGGACGCCGACTCAGGTTGTGGACTGGATCAGAGGCCTGGACGACAGTCTCCAGCAGTACGTTCCTAACTTTGAGAGAGCGAAGATCAGCGGAGAGCAGCTCCTGAAGATTTCCCATCAGGACCTGGAGGAGCTGACCATGACCCGCGTCGGTCATCAGGAGCTGATCCTGGAGGCTGTGGATCTGCTCTGCGCATTGaactgCGGCGTGGAGACCGATAACTTGAAGACCCTGGTGGGTCAGATGCGAGCAGCGTCCAACAACTTGCACAACTGTGCATCGGAGCGCAGGAAAAACCCCACTTACGATGGAGGAAGTCCAAACAAACCACCTAACGTGTTCCTGACCGCTGTGGTGGAGCTGATAGGGGCTGCCAAGGGCATGCTGGCCTGGCTTGACAGGACTCCCCTGACAGGAATCAGTGATTTCACCTCAACCAAAAACAAGATCATTCAGCTCTGCCTGGAACTGACCACAACTGTCCAGaagGACTGCTCGGTGTTTGAAATGGAGGAGAAGATATTAGAAGTGTCCCGTGTTTTGACCGGCATTTGTGATTCCACCATGAggatgacctctgaccccttgAAGAGCCAAATGACCTGTCTGGAGGAAATCACCATCACTAATATCAAAGCGGGCGAGGGACTGggaatGTATATCAAATCCACTTACGATGGGCTGCACGTCATCACCGGAACCACAGAAAATTCCCCAGCAGACAGAACTCAGAGGATTCATGCGGGCGATGAGGTGATACAAGTCAACAGACAAACAGTGGTGGGCTGGCACTTGAAGAATCTGGTGGACAAGCTCAGAGAAGATCCTCAGATTGTGACACTGATGTTGAAGAAAAGACCAACCGGAACCTGTGGCTTCACACCAGCACCGCTGAAGAACATGCGCTGGAGGCCCCCTGTCGTCCAGagcCCATCGTATGCGCCTGCCGCCCAGTCGTCCAGAGATCCCGCGCAGATCCAGCGTCCGGAGAAACCTGCGATTTTAGATCTCTatattcctcctcctccttccatGCCATACAGCCCACGgAAGGCAGAGACGAGTGAGTACGCAGGAGTAAAGATGAGGCCGAAAGGTTCAGAGTCCCCCAACTCATCTCTGGATTTAGCCAGTAGACGGCGTTCAAACATCAGCGACTACAACAGCAAACCTAGCGTAAAGCCAGCGGAGGTCGTCCCACAAGCGCGGCTCAGACAGAGGACCCCATCTAGAGGGAAGCCGCGTCCCATGTCCATGCCGGTAGACACTTGCCTAGGCGTGTCGGAGTCTCCCTCCAGACCCTGGGCCCTCGGACGGAAAGGGGGTGAGATCCTGCACAGATATCTGAGTAACGAGCAGATCCCCACCATCTCAGAAGAGTCACCCTGTTACCCTCTGCCCTACCGGCCCACGGGAGAACGCCGGCTCGTCCGAGGGGTGGACCACATCCGCGGCAGCCAGTGCTTCATCAACGCAGACCTGCACACCAGCGCCACCATACCCTACCAGGAGGCCCTGGCTCGGAAACCTGCGGCCAAATCCTCCAAGAGAGCGCCCTCGGAGCCCTCGCTGTTCAGCAGCTGGATCGCCCGACTCAAGCTGCTCACACACGGTCTCCCGCGGGTCAGGCTCGGCCTCCAGAGCTCTTCACGAACACGGGCTGAGATGTCTGCGAGGGGGCTTTTCCGAGGAATAAAACACCTCCAGGTCTTCACGTGCTGGCTACAGttgGTAGAGGACATCTTTGTGCTGTTCTCCTATTTGAAGGCGGCAGAAGTGACTCGGATGAGCCGGACACGGTCTTACCCTCTTGAAGACTTTGCTGCCGAGACGTCTCAAGGAGATGGTGTGATGAGCCGCAGGAGGGTCTCTGTGAAAGACCTGGGCCAGGGCGACTGTCAGGGCTGGTTGTACAAAAGGAAGGATAGCAAAGGGCTCTTGGGCTGGAGGTGGAAGAAGTTTTGGTTTGTGCTCAAGAAATGTTCGCTCTACTGGTACACATCAGACATGGCGGAGAAAGCGGAAGGCTACATCAAACTGAGAGACTTCACCATAGAACAGGCTACCGAATGCAAAAAGAAGTTTGCAATGAAAGCGAGCCACCTCCACGTACTGACGCTCTACTTTGCAGCTGAGAACATGAAAGACATGAACAAatgGCTGGCTAAACTCACCCAGGCTTCAAATGaacctgagcccacagactcaaccgATGGAGAGTGCTACAGTGAGGCGagtgatgatgaggatgaagcAGACTCAGCTGAGATGTGTGCAGAGTACATGGATCAGCTGACTCCCGGCTCTCTGCGTGGCTGTCTCTCGCCTCCCcgctcctcttcctctccgtGTCAGGACTCGTTCCACGCAGACAGTGGGTCGTGGCAGGAGATCAGCTCAGAGGAAGACCCCATCCACAAAATACAGGAATTCAAAGGAAATGACTGCCCCCCGTCTGATGAGATGGAAATGCTGTATCTTCACCTCAAGCAAGCGAGTCTGTCCCCAATGGGAGCCCTGCATCCGACCACCAAACATGATTTCAGGTCGTCCTTCATCAGACGCTGCAAAGACGAGAGCATTAATGAGAAGCTGCACCTGATTCGAGCTTTAAACAGCACTTTAAAGGCAAAGGAGGCCGATCTGCAGGTCATAGAGCAGGTCTTGAGCGAAGCGTCTCTGAGCGCTTGTAAATACAGACAGTGGCGAGATGTTAACGTGCTCCTGCTGCAGGAGATCGGAGAGAAACACAAGAGGCCCGTGGAGCCGCAAGCCCAGGAGGCTCTGCTTCTGGTTCAGCCTCAGACGCTCCCGACAGTCTCCGTGCACACCGAGACCAGCCTGTGAAGACCTCAAACCCAAGGGAAGCTTCTCTGAAACACTTCAAACAGATACTCCCATAGCGGTGTTTTTCCTGAAGATGAGCCTAAATTGGTCATCACTCATTTCTGAAACGCGTGCATTTTGCCTTTCGTAGTTCAGAATATCTGTAACAATATGAGATGTCACGTGTTCACATCGTTCAGTGTTTTGATCAAAAGAGTGGCGGAGGAAAAAGTTCTGTAAACTTTACTCATGAATTTATTACAACACTgtattgtatagttttttttttttatgcagtctATATGATTTTCTCCAAAACACACTCCTGCACATGTCCTGTTTTTGTTACTAATCACTCCATTTTACACTCACTAGACACACAAATCTAATATGGTCCTCTCTGCTATTCATCATTTAGTTTGTATTGAGTGTTTTTAGAAGGGGTGTCTAGTTTACCAGTTTTTAACATTTGGTGtctttttagatattttagcattttgctGGAAATTTAATGTCTCTGgtattgtacatttttgtataaatgtctGATTTAACTCcgtgtaaatgtttatttggttatttttaaagtaattcgTGCTGAAGGTGTTTCGAAGGAAATAAAAATGGCGGTTCAATAGTT

Function

symbol description
cnksr3 Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in cytoplasm and membrane. Orthologous to human CNKSR3 (CNKSR family member 3).
ipcef1 Orthologous to human IPCEF1 (interaction protein for cytohesin exchange factors 1).

NR:

description
PREDICTED: connector enhancer of kinase suppressor of ras 3-like

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23784 CNKSR3, CNK3; connector enhancer of kinase suppressor of Ras 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219514.1 True 3514 mRNA 0.51 24 4973048 5010559

Neighbor

gene id symbol gene type direction distance location
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding downstream 6267 4928862 ~ 4966781 (-)
LOC122324970 cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202 coding downstream 44888 4917807 ~ 4928160 (-)
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding downstream 91421 4849379 ~ 4881627 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding downstream 267740 4695514 ~ 4705308 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding downstream 298900 4668679 ~ 4674148 (-)
ttc13 ttc13,LOC107679664,LOC106571397 coding upstream 23790 5034349 ~ 5052435 (-)
fam89a fam89a,LOC107727345,LOC107742210,LOC107685750,LOC107679680 coding upstream 50148 5060707 ~ 5064427 (-)
sprtn sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995 coding upstream 56056 5066615 ~ 5072155 (-)
c20h1orf131 LOC107727347,LOC107685755 coding upstream 105289 5115848 ~ 5121484 (-)
ints7 ints7,LOC107685756,LOC107659878 coding upstream 365394 5375953 ~ 5385180 (-)
G136069 NA non-coding downstream 236242 4736549 ~ 4736806 (-)
G136012 NA non-coding downstream 526845 4445773 ~ 4446203 (-)
trnat-ugu_51 NA non-coding downstream 674493 4298483 ~ 4298555 (-)
G135980 NA non-coding downstream 701359 4271296 ~ 4271689 (-)
G135978 NA non-coding downstream 705469 4266524 ~ 4267579 (-)
G136175 NA non-coding upstream 7802 5018361 ~ 5018866 (-)
G136176 NA non-coding upstream 23040 5033599 ~ 5033804 (-)
G136180 NA non-coding upstream 80741 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 101614 5112173 ~ 5119766 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 641740 5652299 ~ 5652925 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 390951 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 997790 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 1102982 3638289 ~ 3870066 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 2215618 2740552 ~ 2757430 (-)
G135548 NA other downstream 2608224 2364053 ~ 2364824 (-)
si:ch73-111k22.3 LOC107742221 other upstream 822 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 14247 5024806 ~ 5029567 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 150647 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 580779 5591338 ~ 5598666 (-)
G136357 NA other upstream 691120 5701679 ~ 5703911 (-)

Expression


Co-expression Network