adat2 (adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491)


Basic Information

Item Value
gene id adat2
gene name adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19179809 ~ 19232817 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219537.1
AACACGTGTGCGTCACTAAAATGTTACTTTCCTGATTTGcgctgctttatttttttacggtTATACGTTAGATTTGACGAGGATACCGATGGAGATGCGAGGAGACAGTGTCGAACCtgaaaaaagtgattttctgCAGCCGGTAGATAGTGAGATACAAACATGGATGTCAAAGGCCTTTGGCATGgcACTTGATGCCCTTGAGAATGGAGAGGTTCCAGTTGGCTGTCTGATGGTTTTTAACAACGAGATCATTGGAAAGGGAAGGAATGAGgtgaatgaaacaaaaaatGCTACTCGGCATGCAGAAATGGTGGCACTGGATCAAGTGCTTGATTGGTGCCATTTCAGAGAGAAGGACCCAAAGGAGGTGTGTGAACAGACTGTACTTTATGTGACAGTGGAGCCATGTATCATGTGTGCTGCTGCTCTGCGACTGCTTCACATACCTCTTGTTGTATATGGGTGCAAAAATGAGCGGTTTGGAGGCTGTGGATCTGTCCTGGACGTCTCATCAGATCATTTGCCACACACTGGAACTTCATTTAAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGGCTGAGAAGCTCTCGGAGTCTTGTGGTTTTGGCCAGCGTGCCTGGACTGTCTGCGGAAAATCCCCTCCAACAAAACAGCACAACTCACTCAGAGGACCCTGAACTATAAACAGGACAGGCCTTGTCAAACACTCGCGGGATCGACTCCGTATCATCCCGTTTCAGCGTGCACTTCGAGTGTCAAACACTCACTCTGTGAGAGCGAGAATTATTCAGGTACAGATCGACAGATGTAGCCTTTTTATGACCGATGCGCAGTCGTTTTTTTAAGTAGATGACcgttaaataacaaaaatatgcattaagaatgtataataataatcttagGAAAAAACTAAGatgagtgttttaaaaataaaatgaacaaacattaTAATTTCGACTGAGATGTAGTTTATGttatatgattattaatagaatgcaaaaaatatgaggttattattatcagtgttttgttatttattctgTCATGATAAAATGACTAATAATCATCACTGATattgatatgcaaaaaaatatttgtatatgtataaattgtagaattgtaaattattattataatgctattttttcCATGATAAAAATgaccatcatcatcataat
>XM_043219538.1
AACACGTGTGCGTCACTAAAATGTTACTTTCCTGATTTGcgctgctttatttttttacggtTATACGTTAGATTTGACGAGGATACCGATGGAGATGCGAGGAGACAGTGTCGAACCtgaaaaaagtgattttctgCAGCCGGTAGATAGTGAGATACAAACATGGATGTCAAAGGCCTTTGGCATGgcACTTGATGCCCTTGAGAATGGAGAGGTTCCAGTTGGCTGTCTGATGGTTTTTAACAACGAGATCATTGGAAAGGGAAGGAATGAGgtgaatgaaacaaaaaatGCTACTCGGCATGCAGAAATGGTGGCACTGGATCAAGTGCTTGATTGGTGCCATTTCAGAGAGAAGGACCCAAAGGAGGTGTGTGAACAGACTGTACTTTATGTGACAGTGGAGCCATGTATCATGTGTGCTGCTGCTCTGCGACTGCTTCACATACCTCTTGTTGTATATGGGTGCAAAAATGAGCGGTTTGGAGGCTGTGGATCTGTCCTGGACGTCTCATCAGATCATTTGCCACACACTGGAACTTCATTTAAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGCCTCGAGAGGGTCCTGTGAAATGGTGTGTATAAAAGCCGTCTCTGGAA
>XM_043219539.1
AACACGTGTGCGTCACTAAAATGTTACTTTCCTGATTTGcgctgctttatttttttacggtTATACGTTAGATTTGACGAGGATACCGATGGAGATGCGAGGAGACAGTGTCGAACCtgaaaaaagtgattttctgCAGCCGGTAGATAGTGAGATACAAACATGGATGTCAAAGGCCTTTGGCATGgcACTTGATGCCCTTGAGAATGGAGAGGTTCCAGTTGGCTGTCTGATGGTTTTTAACAACGAGATCATTGGAAAGGGAAGGAATGAGgtgaatgaaacaaaaaatGCTACTCGGCATGCAGAAATGGTGGCACTGGATCAAGTGCTTGATTGGTGCCATTTCAGAGAGAAGGACCCAAAGGAGGTGTGTGAACAGACTGTACTTTATGTGACAGTGGAGCCATGTATCATGTGTGCTGCTGCTCTGCGACTGCTTCACATACCTCTTGTTGTATATGGGTGCAAAAATGAGCGGTTTGGAGGCTGTGGATCTGTCCTGGACGTCTCATCAGATCATTTGCCACACACTGGAACTTCATTTAAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGAGGATGGAAAAATAAGAGAGGAGTATCGCTACTCTGAGGATCTGTGATGGGATGAGCGCCATTTTCCTTCCCCCGTCGTATTTCCGTCTCAGGAAATATCCTGTTGACAGAGGGATGC

Function

symbol description
adat2 Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Predicted to act upstream of or within tRNA processing. Orthologous to human ADAT2 (adenosine deaminase tRNA specific 2).

NR:

description
tRNA-specific adenosine deaminase 2 isoform X1

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15441 TAD2, ADAT2; tRNA-specific adenosine deaminase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219537.1 True 1288 mRNA 0.40 7 19199863 19232817
XM_043219538.1 False 733 mRNA 0.45 7 19220917 19232817
XM_043219539.1 False 803 mRNA 0.45 7 19179809 19232817

Neighbor

gene id symbol gene type direction distance location
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding downstream 13801 19096279 ~ 19166008 (-)
si:ch211-202p1.5 LOC107689457,LOC107727565,LOC107717067,LOC107675103,LOC107558944,LOC107553437 coding downstream 92624 19082545 ~ 19087185 (-)
trnaf-gaa_119 NA coding downstream 103691 19076046 ~ 19076118 (-)
nmbr nmbr,LOC107553439,LOC107727594,LOC107689462,LOC107675069,LOC107717045,LOC107558933 coding downstream 169630 19000843 ~ 19010179 (-)
cited2 cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469 coding downstream 305800 18871665 ~ 18874009 (-)
nsl1 nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087 coding upstream 23871 19256688 ~ 19258698 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding upstream 222987 19455804 ~ 19487350 (-)
si:ch211-245h14.1 NA coding upstream 281263 19514080 ~ 19516523 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding upstream 309560 19542377 ~ 19554327 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 383944 19616761 ~ 19628027 (-)
G139903 NA non-coding downstream 19652 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 135895 19040790 ~ 19043914 (-)
G139823 NA non-coding downstream 350010 18824880 ~ 18829799 (-)
G139801 NA non-coding downstream 508876 18669438 ~ 18670933 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding downstream 545143 18627307 ~ 18634666 (-)
G140152 NA non-coding upstream 102262 19335079 ~ 19341060 (-)
G140175 NA non-coding upstream 213011 19445828 ~ 19448712 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 504123 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 567705 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 672814 19905631 ~ 19909647 (-)
G139706 LOC107683600,LOC107601464 other downstream 732860 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 829687 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 1355608 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1751686 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2717593 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 21917 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 28649 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 65417 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 368715 19601532 ~ 19615202 (-)
G140227 cad other upstream 824807 20057624 ~ 20059603 (-)

Expression


Co-expression Network